geney 1.2.52__py2.py3-none-any.whl → 1.2.53__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/oncosplice.py +2 -2
  2. {geney-1.2.52.dist-info → geney-1.2.53.dist-info}/METADATA +1 -1
  3. {geney-1.2.52.dist-info → geney-1.2.53.dist-info}/RECORD +5 -5
  4. {geney-1.2.52.dist-info → geney-1.2.53.dist-info}/WHEEL +0 -0
  5. {geney-1.2.52.dist-info → geney-1.2.53.dist-info}/top_level.txt +0 -0
geney/oncosplice.py CHANGED
@@ -421,7 +421,7 @@ import asyncio
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  async def oncosplice_prototype(mut_id, splicing_threshold=0.5, protein_coding=True, primary_transcript=False,
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- window_length=13, organism='hg38', engine='spliceai', cons_vector=True):
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+ window_length=13, organism='hg38', engine='spliceai', use_cons=True):
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  import sys, os
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  needed_file1 = config[organism]['yoram_path'] / 'rest_api_utils.py'
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  needed_file2 = config[organism]['yoram_path'] / 'uniprot_utils.py'
@@ -471,7 +471,7 @@ async def oncosplice_prototype(mut_id, splicing_threshold=0.5, protein_coding=Tr
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  transcript.generate_mature_mrna().generate_protein(inplace=True)
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  ref_protein, cons_vector = transcript.protein, transcript.cons_vector
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- if not cons_vector:
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+ if not use_cons:
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  cons_vector = np.ones(len(ref_protein))
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  if sum(cons_vector) == 0:
{geney-1.2.52.dist-info → geney-1.2.53.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.52
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+ Version: 1.2.53
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.52.dist-info → geney-1.2.53.dist-info}/RECORD RENAMED
@@ -6,7 +6,7 @@ geney/graphic_utils.py,sha256=oMsBpB9YeEn96gGpKh4MmtagJffWZbk-xPrIwHvkFhA,11016
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  geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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  geney/mutation_utils.py,sha256=C_kv2MB_L8LlhX3W2ooXjJ3uDoJ8zX1WeDtZKoBZJkI,1547
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- geney/oncosplice.py,sha256=wYJeCED6QktO4eHdtc5eXxnbwiv1S3ysN33lWn-GMAI,23540
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+ geney/oncosplice.py,sha256=hPmB9sEPs9lr22BlPGKpQUOd59vUjAttXZ6QKf4A-kg,23534
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  geney/pangolin_utils.py,sha256=rVi_U23nhw6wCc44fBeD3sv-FshLTGE1UMMtIYwgr9U,2967
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=2cRXT_Ox4IdzCM8x3H2HexxFZzjo5WHs0HZiUQv8fBM,18347
@@ -20,7 +20,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.2.52.dist-info/METADATA,sha256=3aWpix97X-XO5i1c6vDlbLpS0s7jAu2DbYdWTK9DPd8,948
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- geney-1.2.52.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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- geney-1.2.52.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.52.dist-info/RECORD,,
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+ geney-1.2.53.dist-info/METADATA,sha256=o8uT_lpsOsrQyXfD84OkN-EFUaVJGmo18IOQK75cUjw,948
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+ geney-1.2.53.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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+ geney-1.2.53.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.53.dist-info/RECORD,,
{geney-1.2.52.dist-info → geney-1.2.53.dist-info}/WHEEL RENAMED
File without changes