geney 1.2.44__py2.py3-none-any.whl → 1.2.45__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/tcga_utils.py +2 -2
  2. {geney-1.2.44.dist-info → geney-1.2.45.dist-info}/METADATA +1 -1
  3. {geney-1.2.44.dist-info → geney-1.2.45.dist-info}/RECORD +5 -5
  4. {geney-1.2.44.dist-info → geney-1.2.45.dist-info}/WHEEL +0 -0
  5. {geney-1.2.44.dist-info → geney-1.2.45.dist-info}/top_level.txt +0 -0
geney/tcga_utils.py CHANGED
@@ -170,8 +170,8 @@ class TCGAGene:
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  return self.df[self.df.case_id == case_id]
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  def get_patients_affected(self, mut_id, read_ratio=0, exclude_filters=None):
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- # returns all patients affected by ALL the mutatins in mut_id
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- pass
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+ return self.data[self.data.mut_id == mut_id].case_id.unique().tolist()
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+
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  def get_patients_unaffected(self, mut_id, must_contain_all=False, read_ratio=0, exclude_filters=None):
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  # returns all patients not affected by ALL the mutation in mut id (patients containg individual mutations only allowed) unless must_contain_all= True
{geney-1.2.44.dist-info → geney-1.2.45.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.44
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+ Version: 1.2.45
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.44.dist-info → geney-1.2.45.dist-info}/RECORD RENAMED
@@ -13,14 +13,14 @@ geney/seqmat_utils.py,sha256=YV5DFLbfjXLIswPGvqK1-eEfwn9TUby0b2kewdGAKws,18372
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  geney/spliceai_utils.py,sha256=gIGPC8u3J15A7EQrk2Elho5PbF9MmUUNopGGH-eEV8s,1873
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  geney/splicing_utils.py,sha256=lGBNknnAdKhcJ3MqPQ5c9oz_NKcL2lcFAr78StjKa6o,16151
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  geney/survival_utils.py,sha256=2CAkC2LsspicHIdrqsiPnjgvpr5KHDUfLFFqnRbPJqs,5762
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- geney/tcga_utils.py,sha256=wM52QZ1M_54CrXZ_uj05R14ycZh23gTZUI8b0ZMtPd0,17615
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+ geney/tcga_utils.py,sha256=D_BNHm-D_K408dlcJm3hzH2c6QNFjQsKvUcOPiQRk7g,17612
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  geney/tis_utils.py,sha256=vA2ci4gNfwwQZlCjPpO5ehvL2NRVeM7lHI_VyfT-_10,8049
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  geney/utils.py,sha256=EsKvBM-Nz2a3_4ZAhF4Dxd4PwT7_6YYKpxEN4LLgg10,2174
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  geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.2.44.dist-info/METADATA,sha256=tVK1pP7jxfft_dc8kghB1pvLShd_C9tsYAL2vGcueAs,948
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- geney-1.2.44.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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- geney-1.2.44.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.44.dist-info/RECORD,,
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+ geney-1.2.45.dist-info/METADATA,sha256=982qXOErqUhJqh574OygwVaFJia1nA7IWVYkMa--DnQ,948
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+ geney-1.2.45.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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+ geney-1.2.45.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.45.dist-info/RECORD,,
{geney-1.2.44.dist-info → geney-1.2.45.dist-info}/WHEEL RENAMED
File without changes