geney 1.2.43__py2.py3-none-any.whl → 1.2.44__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/oncosplice.py +1 -1
  2. {geney-1.2.43.dist-info → geney-1.2.44.dist-info}/METADATA +1 -1
  3. {geney-1.2.43.dist-info → geney-1.2.44.dist-info}/RECORD +5 -5
  4. {geney-1.2.43.dist-info → geney-1.2.44.dist-info}/WHEEL +0 -0
  5. {geney-1.2.43.dist-info → geney-1.2.44.dist-info}/top_level.txt +0 -0
geney/oncosplice.py CHANGED
@@ -478,7 +478,7 @@ async def oncosplice_prototype(mut_id, splicing_threshold=0.5, protein_coding=Tr
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  assert len(ref_protein) == len(
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  cons_vector), f"Protein ({len(ref_protein)}) and conservation vector ({len(cons_vector)} must be same length."
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- missplicing = Missplicing(find_transcript_missplicing(transcript, mutations, engine=engine),
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+ missplicing = Missplicing(find_transcript_missplicing(transcript, mutations, engine=engine, threshold=splicing_threshold),
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  threshold=splicing_threshold)
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  for mutation in mutations:
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  transcript.pre_mrna += mutation
{geney-1.2.43.dist-info → geney-1.2.44.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.43
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+ Version: 1.2.44
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.43.dist-info → geney-1.2.44.dist-info}/RECORD RENAMED
@@ -6,7 +6,7 @@ geney/graphic_utils.py,sha256=oMsBpB9YeEn96gGpKh4MmtagJffWZbk-xPrIwHvkFhA,11016
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  geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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  geney/mutation_utils.py,sha256=C_kv2MB_L8LlhX3W2ooXjJ3uDoJ8zX1WeDtZKoBZJkI,1547
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- geney/oncosplice.py,sha256=bw9C9zutzvxE4q1bPmBG88ByGnrMgbBlxZuAlp_65xw,23414
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+ geney/oncosplice.py,sha256=Tmhkswohr6lcagpci26yms_XyXU14V6MqsRcV1XvQaI,23444
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  geney/pangolin_utils.py,sha256=lLmnjJdJjqwWS85-1jlPLIjD2z14sWjzU87hS-8xxpQ,2873
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/seqmat_utils.py,sha256=YV5DFLbfjXLIswPGvqK1-eEfwn9TUby0b2kewdGAKws,18372
@@ -20,7 +20,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=AF3siFjuQH-Rs44EV-80zHdbxRMvN4woLFSHroWIETc,4448
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.2.43.dist-info/METADATA,sha256=zbXK3WDJrB4kLGtcZxDWyfTPFqZdCd2-HzldPGlMmoY,948
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- geney-1.2.43.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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- geney-1.2.43.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.43.dist-info/RECORD,,
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+ geney-1.2.44.dist-info/METADATA,sha256=tVK1pP7jxfft_dc8kghB1pvLShd_C9tsYAL2vGcueAs,948
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+ geney-1.2.44.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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+ geney-1.2.44.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.44.dist-info/RECORD,,
{geney-1.2.43.dist-info → geney-1.2.44.dist-info}/WHEEL RENAMED
File without changes