geney 1.2.27__py2.py3-none-any.whl → 1.2.28__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/seqmat_utils.py +1 -2
  2. {geney-1.2.27.dist-info → geney-1.2.28.dist-info}/METADATA +1 -1
  3. {geney-1.2.27.dist-info → geney-1.2.28.dist-info}/RECORD +5 -5
  4. {geney-1.2.27.dist-info → geney-1.2.28.dist-info}/WHEEL +0 -0
  5. {geney-1.2.27.dist-info → geney-1.2.28.dist-info}/top_level.txt +0 -0
geney/seqmat_utils.py CHANGED
@@ -170,8 +170,7 @@ class SeqMat:
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  for i in range(3, len(temp.seq), 3):
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  codon = temp.seq[i:i + 3]
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  if codon in ['TAA', 'TAG', 'TGA']:
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- index = temp.seqmat[1, i-3]
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- print(index / 3, codon)
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+ index = temp.seqmat[1, i]
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  return SeqMat().set_seqmat(temp.subseq_prefix(index)) # Not include the stop codon
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  # If no stop codon is found, return the full sequence
{geney-1.2.27.dist-info → geney-1.2.28.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.27
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+ Version: 1.2.28
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.27.dist-info → geney-1.2.28.dist-info}/RECORD RENAMED
@@ -9,7 +9,7 @@ geney/mutation_utils.py,sha256=C-K8F8wyN5joI3ZuP-d7IMYTI43YPDXUc3IgAJ07o8Q,1546
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  geney/oncosplice.py,sha256=3jJc1-CWubH2ElHEjyQtsr9JYVmfPQEpq7EX-IfY-t8,20806
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  geney/pangolin_utils.py,sha256=S2uMjQnnxqWSnfuMaEjo-wq52DVKFiXt__L5VPdtzyU,2939
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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- geney/seqmat_utils.py,sha256=nqz5Ovj3IIb16YMrwqYd9EIWzLUA2qpGTkycZYVIqdY,16848
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+ geney/seqmat_utils.py,sha256=fawiPa4PPhmbx6wPynt8SG6eowZKUZ2yN32r6B8Ba-g,16802
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  geney/spliceai_utils.py,sha256=gIGPC8u3J15A7EQrk2Elho5PbF9MmUUNopGGH-eEV8s,1873
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  geney/splicing_utils.py,sha256=pS3jZEpmnDkbT1jjaJh-O6I--Xm22e5dj-GQu7IAZSQ,15943
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  geney/survival_utils.py,sha256=2CAkC2LsspicHIdrqsiPnjgvpr5KHDUfLFFqnRbPJqs,5762
@@ -19,7 +19,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=iXrWVijyPe-f8I9rEVGdxNnXBrOGPoKFjmvaOEnQYNE,4446
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.2.27.dist-info/METADATA,sha256=9xI__6EWbE9WIxf0V_JCYGGqC5dPgujwQ6cLUMrmHrU,948
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- geney-1.2.27.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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- geney-1.2.27.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.27.dist-info/RECORD,,
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+ geney-1.2.28.dist-info/METADATA,sha256=uTgTWSldfE0pK1rnyAPYmv9nLSKD9B6Ko1_SSEaFWKY,948
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+ geney-1.2.28.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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+ geney-1.2.28.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.28.dist-info/RECORD,,
{geney-1.2.27.dist-info → geney-1.2.28.dist-info}/WHEEL RENAMED
File without changes