geney 1.2.23__py2.py3-none-any.whl → 1.2.24__py2.py3-none-any.whl
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geney/pangolin_utils.py
CHANGED
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@@ -12,6 +12,9 @@ device = torch.device('cpu')
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if sys.platform == 'darwin':
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device = torch.device("mps") if torch.backends.mps.is_available() else torch.device("cpu")
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if sys.platform == 'linux':
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device = torch.device("cuda") if torch.cuda.is_available() else torch.device("cpu")
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for i in pang_model_nums:
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for j in range(1, 6):
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@@ -57,8 +60,8 @@ def pangolin_predict_probs(true_seq, models):
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seq = pang_one_hot_encode(seq).T
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seq = torch.from_numpy(np.expand_dims(seq, axis=0)).float()
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if torch.cuda.is_available():
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# if torch.cuda.is_available():
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seq = seq.to(torch.device("cuda"))
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scores = []
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for j, model_num in enumerate(model_nums):
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: geney
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Version: 1.2.
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Version: 1.2.24
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Summary: A Python package for gene expression modeling.
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Home-page: https://github.com/nicolaslynn/geney
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Author: Nicolas Lynn
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@@ -23,13 +23,10 @@ Requires-Dist: spliceai
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Requires-Dist: biopython==1.81
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Requires-Dist: gtfparse==1.3.0
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Requires-Dist: sh==2.0.6
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Requires-Dist: termplotlib==0.3.9
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Requires-Dist: torch
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Requires-Dist: lifelines
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Requires-Dist: notebook
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Requires-Dist: matplotlib
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Requires-Dist: dask[complete]
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Requires-Dist: dask-jobqueue
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Requires-Dist: gffutils
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Requires-Dist: pyfastx
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@@ -7,7 +7,7 @@ geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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geney/mutation_utils.py,sha256=C-K8F8wyN5joI3ZuP-d7IMYTI43YPDXUc3IgAJ07o8Q,1546
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geney/oncosplice.py,sha256=3jJc1-CWubH2ElHEjyQtsr9JYVmfPQEpq7EX-IfY-t8,20806
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geney/pangolin_utils.py,sha256=
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geney/pangolin_utils.py,sha256=S2uMjQnnxqWSnfuMaEjo-wq52DVKFiXt__L5VPdtzyU,2939
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geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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geney/seqmat_utils.py,sha256=4MiN6rGeQMfWK6bXOHGddxBffx8v4sT1THkZe-AceXE,15611
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geney/spliceai_utils.py,sha256=BiTRIfrovX9qo9xup6bFWp0qkvmW9NVPY98Zw8-OaL0,1891
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@@ -19,7 +19,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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geney/translation_initiation/tis_utils.py,sha256=iXrWVijyPe-f8I9rEVGdxNnXBrOGPoKFjmvaOEnQYNE,4446
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geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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geney-1.2.
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geney-1.2.
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geney-1.2.
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geney-1.2.
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geney-1.2.24.dist-info/METADATA,sha256=sJGrKawFcaFyF1QwLOHn7dNYeznt5f2fKL7NDZvqqq8,948
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geney-1.2.24.dist-info/WHEEL,sha256=fS9sRbCBHs7VFcwJLnLXN1MZRR0_TVTxvXKzOnaSFs8,110
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geney-1.2.24.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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geney-1.2.24.dist-info/RECORD,,
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File without changes
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File without changes
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