geney 1.2.21__py2.py3-none-any.whl → 1.2.22__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/oncosplice.py +1 -1
  2. {geney-1.2.21.dist-info → geney-1.2.22.dist-info}/METADATA +1 -1
  3. {geney-1.2.21.dist-info → geney-1.2.22.dist-info}/RECORD +5 -5
  4. {geney-1.2.21.dist-info → geney-1.2.22.dist-info}/WHEEL +0 -0
  5. {geney-1.2.21.dist-info → geney-1.2.22.dist-info}/top_level.txt +0 -0
geney/oncosplice.py CHANGED
@@ -1047,7 +1047,7 @@ class PredictSpliceAI:
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  # self.missplicing = run_spliceai_transcript(self.modification, transcript_data=gene_data, sai_mrg_context=sai_mrg_context, min_coverage=min_coverage, sai_threshold=0.1)
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  # print(f"RUNNING: {mutation.mut_id}")
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- ref_transcript, var_transcript = Gene(mutation.mut_id.split(':')[0], organism=organism).transcript(gene_data.transcript_id), Gene(mutation.mut_id.split(':')[0], mutation.mut_id, organism='mm39').transcript(gene_data.transcript_id)
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+ ref_transcript, var_transcript = Gene(mutation.mut_id.split(':')[0], organism=organism).transcript(gene_data.transcript_id), Gene(mutation.mut_id.split(':')[0], mutation.mut_id, organism=organism).transcript(gene_data.transcript_id)
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  # print(f"Second check : {ref_transcript.pre_mrna == var_transcript.pre_mrna}")
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  self.missplicing = find_transcript_missplicing(self.modification, ref_transcript, var_transcript, context=sai_mrg_context+min_coverage, threshold=threshold,
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  engine=engine)
{geney-1.2.21.dist-info → geney-1.2.22.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.21
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+ Version: 1.2.22
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.21.dist-info → geney-1.2.22.dist-info}/RECORD RENAMED
@@ -4,7 +4,7 @@ geney/config_setup.py,sha256=VA6mhVGMRadwlpEx4m1wrssmDM8qpfKT21MAijIwjyQ,428
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  geney/data_setup.py,sha256=LTiJMYPgv9KnIgUNw-D57Fu4nxL4OojXMpmdhE8QSYU,12228
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  geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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- geney/oncosplice.py,sha256=sp6kfKbFqwpZIuLZadvCq0aj-JUnM_GE99eaGRm19eY,78240
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+ geney/oncosplice.py,sha256=AZm8Vj7z65DokPmeflwoqs2BM11neV9hQLA_Ao4ysnM,78242
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  geney/power_utils.py,sha256=MehZFUdkJ2EFUot709yPEDxSkXmH5XevMebX2HD768A,7330
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  geney/survival_utils.py,sha256=2CAkC2LsspicHIdrqsiPnjgvpr5KHDUfLFFqnRbPJqs,5762
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  geney/tcga_utils.py,sha256=vXSMf1OxoF_AdE_rMguy_BoYaart_E1t4FFMx2DS1Ak,15585
@@ -13,7 +13,7 @@ geney/translation_initiation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  geney/translation_initiation/tis_utils.py,sha256=iXrWVijyPe-f8I9rEVGdxNnXBrOGPoKFjmvaOEnQYNE,4446
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  geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFWDCD9cujQ_AlZO-iiOvBl82hqE,1165
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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- geney-1.2.21.dist-info/METADATA,sha256=PfL1XAeWg2oGBxlytfbfJARnKJ4W1GOrC9DOsSi7Jwc,1163
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- geney-1.2.21.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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- geney-1.2.21.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.21.dist-info/RECORD,,
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+ geney-1.2.22.dist-info/METADATA,sha256=eTTiyuGPZ5lD7jV8YZXSocPyewD3OPwvgeaqiXxuVfo,1163
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+ geney-1.2.22.dist-info/WHEEL,sha256=AHX6tWk3qWuce7vKLrj7lnulVHEdWoltgauo8bgCXgU,109
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+ geney-1.2.22.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.22.dist-info/RECORD,,
{geney-1.2.21.dist-info → geney-1.2.22.dist-info}/WHEEL RENAMED
File without changes