geney 1.2.14__py2.py3-none-any.whl → 1.2.16__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/oncosplice.py +2 -2
  2. {geney-1.2.14.dist-info → geney-1.2.16.dist-info}/METADATA +1 -1
  3. {geney-1.2.14.dist-info → geney-1.2.16.dist-info}/RECORD +5 -5
  4. {geney-1.2.14.dist-info → geney-1.2.16.dist-info}/WHEEL +0 -0
  5. {geney-1.2.14.dist-info → geney-1.2.16.dist-info}/top_level.txt +0 -0
geney/oncosplice.py CHANGED
@@ -1041,8 +1041,8 @@ class PredictSpliceAI:
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  # elif isinstance(gene_data, Transcript):
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  # self.missplicing = run_spliceai_transcript(self.modification, transcript_data=gene_data, sai_mrg_context=sai_mrg_context, min_coverage=min_coverage, sai_threshold=0.1)
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- print("RUNNING")
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- ref_transcript, var_transcript = Gene(mutation.mut_id.split(':')[0], organism='mm39').transcript(gene_data.transcript_id), Gene(mutation.mut_id.split(':')[0], variation=mutation, organism='mm39').transcript(gene_data.transcript_id)
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+ print(f"RUNNING: {mutation.mut_id}")
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+ ref_transcript, var_transcript = Gene(mutation.mut_id.split(':')[0], organism='mm39').transcript(gene_data.transcript_id), Gene(mutation.mut_id.split(':')[0], mutation.mut_id, organism='mm39').transcript(gene_data.transcript_id)
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  print(f"Second check : {ref_transcript.pre_mrna == var_transcript.pre_mrna}")
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  self.missplicing = find_transcript_missplicing(self.modification, ref_transcript, var_transcript, context=sai_mrg_context+min_coverage, threshold=threshold,
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  engine=engine)
{geney-1.2.14.dist-info → geney-1.2.16.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.14
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+ Version: 1.2.16
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.14.dist-info → geney-1.2.16.dist-info}/RECORD RENAMED
@@ -9,7 +9,7 @@ geney/gtex.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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  geney/netchop.py,sha256=AMiy9YsdTmX4B3k3Y5Yh7EmoGAojM1O3AzhPKOiB--g,3050
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- geney/oncosplice.py,sha256=WA2adZmfRzETV0qzvbeLHOleBaJmVNZUyj6VeJSvTBE,77958
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+ geney/oncosplice.py,sha256=MbupurEf0v5WYFHggbvnhEKWCyT_MpTvXgFocTESXpk,77975
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  geney/oncosplice_mouse.py,sha256=LYLOukI9qI1IBkyl1qVRFR5d1NAw7Orlj8Zth-4xCW8,12962
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  geney/oncosplice_pipeline.py,sha256=hpGqFHOdn8i8tvvs1-t3-G9Ko18zInwoDXBJbbrfbC4,68036
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  geney/performance_utils.py,sha256=FQt7rA4r-Wuq3kceCxsSuMfj3wU1tMG8QnbL59aBohs,4700
@@ -45,7 +45,7 @@ geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFW
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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  geney/translation_termination/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  geney/translation_termination/tts_utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- geney-1.2.14.dist-info/METADATA,sha256=Csmzf0LfOWrHGrSIOFprvkUfSc6F5WswwS7XJTEvGgk,1199
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- geney-1.2.14.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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- geney-1.2.14.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.14.dist-info/RECORD,,
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+ geney-1.2.16.dist-info/METADATA,sha256=wEwQVKYPCLnaNi5FsnM3CTQ_RrnZe7fVPs3NLFgTkos,1199
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+ geney-1.2.16.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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+ geney-1.2.16.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.16.dist-info/RECORD,,
{geney-1.2.14.dist-info → geney-1.2.16.dist-info}/WHEEL RENAMED
File without changes