geney 1.2.11__py2.py3-none-any.whl → 1.2.12__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/oncosplice.py +1 -1
  2. {geney-1.2.11.dist-info → geney-1.2.12.dist-info}/METADATA +1 -1
  3. {geney-1.2.11.dist-info → geney-1.2.12.dist-info}/RECORD +5 -5
  4. {geney-1.2.11.dist-info → geney-1.2.12.dist-info}/WHEEL +0 -0
  5. {geney-1.2.11.dist-info → geney-1.2.12.dist-info}/top_level.txt +0 -0
geney/oncosplice.py CHANGED
@@ -792,7 +792,7 @@ def find_transcript_missplicing(mutations, ref_transcript, var_transcript, conte
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  start_pad, end_pad = max(0, context - (center_index - start_cutoff)), max(0, context - (end_cutoff - center_index))
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  mut_seq = 'N' * start_pad + mut_seq[start_cutoff:end_cutoff] + 'N' * end_pad
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  mut_indices = [-1] * start_pad + mut_indices[start_cutoff:end_cutoff] + [-1] * end_pad
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- print(mut_seq)
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+ print(f"Mut and Ref are equal: {mut_seq == ref_seq}")
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  copy_mut_indices = mut_indices.copy()
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{geney-1.2.11.dist-info → geney-1.2.12.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.2.11
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+ Version: 1.2.12
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.2.11.dist-info → geney-1.2.12.dist-info}/RECORD RENAMED
@@ -9,7 +9,7 @@ geney/gtex.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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  geney/netchop.py,sha256=AMiy9YsdTmX4B3k3Y5Yh7EmoGAojM1O3AzhPKOiB--g,3050
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- geney/oncosplice.py,sha256=ZaCsRUNLhGx3Yg9l-Vp7MnP4_mOe3fj6T-_d9Wfs1QE,77755
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+ geney/oncosplice.py,sha256=WgKxl3VbrTKAza65Wci73nEOXtTBN-0TpDjhaKMkeII,77794
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  geney/oncosplice_mouse.py,sha256=LYLOukI9qI1IBkyl1qVRFR5d1NAw7Orlj8Zth-4xCW8,12962
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  geney/oncosplice_pipeline.py,sha256=hpGqFHOdn8i8tvvs1-t3-G9Ko18zInwoDXBJbbrfbC4,68036
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  geney/performance_utils.py,sha256=FQt7rA4r-Wuq3kceCxsSuMfj3wU1tMG8QnbL59aBohs,4700
@@ -45,7 +45,7 @@ geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFW
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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  geney/translation_termination/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  geney/translation_termination/tts_utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- geney-1.2.11.dist-info/METADATA,sha256=Ll6Nz8fBNL_ZIVWYxb8NnWlt1AIKQoNOazopm6c6q-I,1199
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- geney-1.2.11.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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- geney-1.2.11.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.2.11.dist-info/RECORD,,
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+ geney-1.2.12.dist-info/METADATA,sha256=UdmJ2n6dZ4qt2rQ0CR3UzkqVN4g-1wkGos-5pi9PI1Q,1199
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+ geney-1.2.12.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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+ geney-1.2.12.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.2.12.dist-info/RECORD,,
{geney-1.2.11.dist-info → geney-1.2.12.dist-info}/WHEEL RENAMED
File without changes