geney 1.1.2__py2.py3-none-any.whl → 1.1.3__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/survival.py +3 -2
  2. {geney-1.1.2.dist-info → geney-1.1.3.dist-info}/METADATA +1 -1
  3. {geney-1.1.2.dist-info → geney-1.1.3.dist-info}/RECORD +5 -5
  4. {geney-1.1.2.dist-info → geney-1.1.3.dist-info}/WHEEL +0 -0
  5. {geney-1.1.2.dist-info → geney-1.1.3.dist-info}/top_level.txt +0 -0
geney/survival.py CHANGED
@@ -64,7 +64,7 @@ class SurvivalAnalysis:
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  df[col].nunique() > 1]] # and df[col].value_counts(normalize=True).min() >= 0.01]]
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  return df
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- def kaplan_meier_analysis(self, df, control_label='CV', target_label='Epistasis', feature='group', plot=False):
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+ def kaplan_meier_analysis(self, df, control_label='CV', target_label='Epistasis', feature='group', plot=False, time_cap=False):
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  # Can only be performed on features with two unique values
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  cap_time = df.groupby(feature).duration.max().min()
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  # df['duration'] = df['duration'].clip(upper=cap_time)
@@ -98,7 +98,8 @@ class SurvivalAnalysis:
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  plt.title('Kaplan-Meier Survival Curves')
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  plt.xlabel('Time')
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  plt.ylabel('Survival Probability')
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- plt.xlim([0, cap_time])
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+ if time_cap:
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+ plt.xlim([0, cap_time])
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  plt.show()
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  results['p_value'] = p_value
{geney-1.1.2.dist-info → geney-1.1.3.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.1.2
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+ Version: 1.1.3
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.1.2.dist-info → geney-1.1.3.dist-info}/RECORD RENAMED
@@ -10,7 +10,7 @@ geney/netchop.py,sha256=mgKe9Yv2m1SlZUmIXBVNtH-rP5PtBn9SlEi9lE1L0SE,2821
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  geney/oncosplice.py,sha256=Fyc_UtAhV3Pv0vk8V55rO_jnb2Dwj5sW98KVwP3PHwU,68964
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  geney/oncosplice_pipeline.py,sha256=hpGqFHOdn8i8tvvs1-t3-G9Ko18zInwoDXBJbbrfbC4,68036
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  geney/power_utils.py,sha256=WRpqMnqUv1xrAeTduAUhx6YpSEJQci7bC2od12JcVtE,7267
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- geney/survival.py,sha256=94d53XeFSZy4ZK-C0u0lkauFwZVnww2JL7kBB0aJDDA,5527
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+ geney/survival.py,sha256=gNKZGcwxDZ00ixVBHf3ZdjbY_AHQOCU9kKpBC_dokbM,5572
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  geney/tcga_annotations.py,sha256=DjRl6Pk5VAOL1yhbt8SXD6FZhYbcYNu3FtXYMeveGB0,15016
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  geney/tcga_utils.py,sha256=cX9hbDX-qECyCMSYaBL8r1FWWuju08jQvlPT3q13B3Y,15777
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  geney/utils.py,sha256=YOe22gA0Oew9_QEym7ivM9sb7t3wNeHTeiSDBmvOPso,1984
@@ -40,7 +40,7 @@ geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFW
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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  geney/translation_termination/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  geney/translation_termination/tts_utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- geney-1.1.2.dist-info/METADATA,sha256=o9RBIxjheWrogT4Tp-Do6ySJWhN-7oXedvtiV0KE1RQ,1130
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- geney-1.1.2.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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- geney-1.1.2.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.1.2.dist-info/RECORD,,
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+ geney-1.1.3.dist-info/METADATA,sha256=ec8t6aiZh-SlD6yyhfar7GBs7ljgXw66-TBM7lPXZCo,1130
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+ geney-1.1.3.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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+ geney-1.1.3.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.1.3.dist-info/RECORD,,
{geney-1.1.2.dist-info → geney-1.1.3.dist-info}/WHEEL RENAMED
File without changes