geney 1.1.15__py2.py3-none-any.whl → 1.1.16__py2.py3-none-any.whl

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Files changed (5) hide show
  1. geney/oncosplice.py +2 -1
  2. {geney-1.1.15.dist-info → geney-1.1.16.dist-info}/METADATA +1 -1
  3. {geney-1.1.15.dist-info → geney-1.1.16.dist-info}/RECORD +5 -5
  4. {geney-1.1.15.dist-info → geney-1.1.16.dist-info}/WHEEL +0 -0
  5. {geney-1.1.15.dist-info → geney-1.1.16.dist-info}/top_level.txt +0 -0
geney/oncosplice.py CHANGED
@@ -520,17 +520,18 @@ class Transcript:
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  return mrna, indices
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  def generate_mature_mrna_pos(self, reset=True):
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- mature_mrna_pos, mature_indices_pos = '', []
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  if reset:
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  pre_seq_pos, pre_indices_pos = self.generate_pre_mrna_pos()
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  self.pre_mrna, _ = self.__pos2sense(pre_seq_pos, pre_indices_pos)
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  else:
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  pre_seq_pos, pre_indices_pos = self.__sense2pos(self.pre_mrna, self.pre_indices)
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+ mature_mrna_pos, mature_indices_pos = '', []
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  for i, j in self.exons_pos:
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  rel_start, rel_end = pre_indices_pos.index(i), pre_indices_pos.index(j)
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  mature_mrna_pos += pre_seq_pos[rel_start:rel_end + 1]
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  mature_indices_pos.extend(pre_indices_pos[rel_start:rel_end + 1])
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+ print('Next exon: ', len(mature_mrna_pos), len(mature_indices_pos))
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  return mature_mrna_pos, mature_indices_pos
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  def generate_mature_mrna(self, inplace=True):
{geney-1.1.15.dist-info → geney-1.1.16.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geney
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- Version: 1.1.15
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+ Version: 1.1.16
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  Summary: A Python package for gene expression modeling.
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  Home-page: https://github.com/nicolaslynn/geney
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  Author: Nicolas Lynn
{geney-1.1.15.dist-info → geney-1.1.16.dist-info}/RECORD RENAMED
@@ -9,7 +9,7 @@ geney/gtex.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/gtex_utils.py,sha256=asL2lHyU5KsbWpV096vkf1Ka7hSo_RRfZqw7p5nERmE,1919
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  geney/immune_utils.py,sha256=ZRni5ttrhpYBnmNr0d0ZatIbNPYs4nmQuoUO00SpsS4,5271
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  geney/netchop.py,sha256=AMiy9YsdTmX4B3k3Y5Yh7EmoGAojM1O3AzhPKOiB--g,3050
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- geney/oncosplice.py,sha256=vHKRq5Zkc0qhsMAe8sZKbGjjK6-Wgk_Si0EDHUU_BOY,68971
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+ geney/oncosplice.py,sha256=ACFXY6MxWkzWFW7pT__xezEczUECIdsxkp490BhMIDw,69051
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  geney/oncosplice_mouse.py,sha256=LYLOukI9qI1IBkyl1qVRFR5d1NAw7Orlj8Zth-4xCW8,12962
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  geney/oncosplice_pipeline.py,sha256=hpGqFHOdn8i8tvvs1-t3-G9Ko18zInwoDXBJbbrfbC4,68036
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  geney/performance_utils.py,sha256=FQt7rA4r-Wuq3kceCxsSuMfj3wU1tMG8QnbL59aBohs,4700
@@ -45,7 +45,7 @@ geney/translation_initiation/resources/kozak_pssm.json,sha256=pcd0Olziutq-6H3mFW
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  geney/translation_initiation/resources/tis_regressor_model.joblib,sha256=IXb4DUDhJ5rBDKcqMk9zE3ECTZZcdj7Jixz3KpoZ7OA,2592025
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  geney/translation_termination/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  geney/translation_termination/tts_utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- geney-1.1.15.dist-info/METADATA,sha256=DMZ8ovJT_dpSe2rmM_m2LAc9nIZsOf4VUlLE__kscfY,1199
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- geney-1.1.15.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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- geney-1.1.15.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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- geney-1.1.15.dist-info/RECORD,,
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+ geney-1.1.16.dist-info/METADATA,sha256=3-X2TXvBD4tnzvg9LzOCXjMON0OOGIO9mdDmzQwKxS8,1199
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+ geney-1.1.16.dist-info/WHEEL,sha256=iYlv5fX357PQyRT2o6tw1bN-YcKFFHKqB_LwHO5wP-g,110
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+ geney-1.1.16.dist-info/top_level.txt,sha256=O-FuNUMb5fn9dhZ-dYCgF0aZtfi1EslMstnzhc5IIVo,6
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+ geney-1.1.16.dist-info/RECORD,,
{geney-1.1.15.dist-info → geney-1.1.16.dist-info}/WHEEL RENAMED
File without changes