genelastic 0.7.0__py3-none-any.whl → 0.8.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (25) hide show
  1. genelastic/api/cli_start_api.py +18 -0
  2. genelastic/api/extends/example.yml +20 -0
  3. genelastic/api/server.py +27 -24
  4. genelastic/api/settings.py +5 -9
  5. genelastic/api/specification.yml +350 -0
  6. genelastic/common/__init__.py +6 -1
  7. genelastic/common/cli.py +52 -0
  8. genelastic/common/server.py +51 -0
  9. genelastic/import_data/cli_gen_data.py +52 -25
  10. genelastic/import_data/random_bundle.py +69 -46
  11. genelastic/ui/cli_start_ui.py +18 -0
  12. genelastic/ui/routes.py +86 -0
  13. genelastic/ui/server.py +9 -82
  14. genelastic/ui/settings.py +2 -6
  15. genelastic/ui/templates/analyses.html +11 -0
  16. genelastic/ui/templates/bi_processes.html +11 -0
  17. genelastic/ui/templates/home.html +4 -0
  18. genelastic/ui/templates/layout.html +34 -0
  19. genelastic/ui/templates/version.html +9 -0
  20. genelastic/ui/templates/wet_processes.html +11 -0
  21. {genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/METADATA +7 -3
  22. {genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/RECORD +25 -13
  23. {genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/WHEEL +1 -1
  24. {genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/entry_points.txt +2 -0
  25. {genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/top_level.txt +0 -0
{genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: genelastic
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- Version: 0.7.0
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+ Version: 0.8.0
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  Summary: Generate and store genetic data into an Elasticsearch database.
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  Author: CNRGH
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  Author-email: Pierrick ROGER <pierrick.roger@cnrgh.fr>, Maxime BLANCHON <maxime.blanchon@cnrgh.fr>
@@ -16,7 +16,7 @@ Requires-Dist: elasticsearch
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  Requires-Dist: PyVCF3
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  Requires-Dist: schema
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  Requires-Dist: PyYAML
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- Requires-Dist: biophony>=1.2.1
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+ Requires-Dist: biophony<1.4,>=1.3.0
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  Requires-Dist: colorlog
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  Provides-Extra: tests
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  Requires-Dist: pytest; extra == "tests"
@@ -27,7 +27,7 @@ Requires-Dist: types-PyYAML; extra == "tests"
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  Requires-Dist: ruff<0.9,>=0.8.1; extra == "tests"
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  Requires-Dist: pre-commit<4.1,>=4.0.1; extra == "tests"
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  Requires-Dist: types-requests; extra == "tests"
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- Requires-Dist: ansible<10.5,>=10.4.0; extra == "tests"
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+ Requires-Dist: ansible-core>=2.17.0; extra == "tests"
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  Requires-Dist: ansible-lint<25,>=24.12.2; extra == "tests"
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  Provides-Extra: docs
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  Requires-Dist: sphinx; extra == "docs"
@@ -38,10 +38,14 @@ Requires-Dist: flask; extra == "api"
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  Requires-Dist: elasticsearch; extra == "api"
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  Requires-Dist: environs; extra == "api"
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  Requires-Dist: connexion[flask,swagger-ui,uvicorn]; extra == "api"
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+ Requires-Dist: gunicorn; extra == "api"
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  Provides-Extra: ui
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  Requires-Dist: flask; extra == "ui"
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  Requires-Dist: requests; extra == "ui"
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  Requires-Dist: environs; extra == "ui"
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+ Requires-Dist: uvicorn; extra == "ui"
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+ Requires-Dist: asgiref; extra == "ui"
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+ Requires-Dist: gunicorn; extra == "ui"
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  # genelastic
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{genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/RECORD RENAMED
@@ -1,21 +1,25 @@
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  genelastic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  genelastic/api/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ genelastic/api/cli_start_api.py,sha256=7sGgEDUC8qBSWxZsiNw3xirU7f8KP0e1guGsX0V8Fno,551
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  genelastic/api/routes.py,sha256=O_bZGhKex04tWauE1fYRXjNmR2smIA4JZShwcakbJJA,6938
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- genelastic/api/server.py,sha256=XkkHpv_28OrfrY6CMDnImBFlDiEQSA8f1BpSSn2LGL4,2248
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- genelastic/api/settings.py,sha256=vLfj8ASLqq9f6c3eGg30L_WSBiaOIpnCsk-S-TUZRlk,403
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+ genelastic/api/server.py,sha256=VRMsI9BD0OY5H9dXx39f6M64qpBIptbkxMeATvII-AY,2360
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+ genelastic/api/settings.py,sha256=dbKQib2QQisxvi4riwJ67iB9imu-x7ZXOcKjeXuO0rU,316
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+ genelastic/api/specification.yml,sha256=ZbjPxk5aud76yeVyqBe410g4hQJDeZImqswa1EMtD00,10116
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  genelastic/api/extends/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  genelastic/api/extends/example.py,sha256=5vOw2ToYWzOj-vYkOLbqoa1MCnXIvKuv7xW6qBQ-eHU,164
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- genelastic/common/__init__.py,sha256=GfM4XaiaHsA2v8N0T3VgnXpZsLXjTc1wIPpRi4BlkZ8,937
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- genelastic/common/cli.py,sha256=cDbgc2m20Y1NO0CZR1qaTrCttcf0cjFAP885tuPZsH0,1770
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+ genelastic/api/extends/example.yml,sha256=oStFpgLIOAgs01PCJWZEG1sCunAKAxLa4gNoopUy0Ko,543
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+ genelastic/common/__init__.py,sha256=Rg9BZj8UJh24cRU7xvL67Ju3vLSpCEdEnZTEMrOqsx4,1012
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+ genelastic/common/cli.py,sha256=uXd2alWple3lLi6nyvtFUH86qhlqUljzY8ry8rvajVI,3253
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  genelastic/common/elastic.py,sha256=0XpECyNMC9RzQN1X7u-0IXmHp_KbSjkmGizArLjxTS0,7260
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  genelastic/common/exceptions.py,sha256=l4sQBW91OuzV2R7DhrVzEMDrfsyKM-iVYufp2Cv6rR8,159
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+ genelastic/common/server.py,sha256=o1AbarQ7JKEeYB5ZcvdZUdInSquLsq5dpFL--Jo7P5k,1401
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  genelastic/common/types.py,sha256=JeQ6XzIemIF1QgvprGA0UxFHyJSKjEkgMaIumOvpbNg,1013
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  genelastic/import_data/__init__.py,sha256=Ir_fI0BrdC44JiiQaWm29_SyHbDe2CQsElKHgQxELCI,602
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  genelastic/import_data/analyses.py,sha256=yA4DKtXIUR7JTCp7PEndEjI6FOooW-6lR9vkqTZ0Izs,1861
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  genelastic/import_data/analysis.py,sha256=MuHYfIWFFwHfCp9tDkWTtVKkg5AasASwrdOUZ177EeM,7799
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  genelastic/import_data/bi_process.py,sha256=CBBGx6oO7KYzUypXzpaopGY4J_nAKcDi2UPJe7B63Bs,650
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  genelastic/import_data/bi_processes.py,sha256=Kv93NOntycEiB_BldoMxHNfM6sJvgHQvVqrUSSEb_VA,1365
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- genelastic/import_data/cli_gen_data.py,sha256=WYvSgiC30pDvhQuGMxtDKookUF9IQpjQP6UMANvvHSU,3012
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+ genelastic/import_data/cli_gen_data.py,sha256=teK5G7mcx6Y5Yi0idOdRyrnBNe1emKKLQKRSBElQQbg,3979
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  genelastic/import_data/cli_import.py,sha256=Ej-EqaBUNoVHGCefzLsmFbKaXNTaOBs8xJsEdRhbbLo,11622
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  genelastic/import_data/cli_info.py,sha256=ue0Pf5cJvrmJ_bBZKG2CXkXDsQO3zQ6CIXhtUwpqXhU,7301
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  genelastic/import_data/cli_integrity.py,sha256=lOMA-I1iPXiJD4X80Xg91NKO-fa3Su0uSqBUtdMKU4Q,12282
@@ -26,15 +30,23 @@ genelastic/import_data/filename_pattern.py,sha256=3QXOF5ZG9vFA8KG7XXucpA7EIN3dqZ
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  genelastic/import_data/import_bundle.py,sha256=7W0hKwoxwGDtWEGV_NQvyesiNx1lCMpSaqKohpTLmtY,5030
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  genelastic/import_data/import_bundle_factory.py,sha256=COdMLTTrx_Y4svZAHVJ5Y0rHM4eQj027rFJiQ66u36M,9546
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  genelastic/import_data/logger.py,sha256=X12LBoNTmV6iR8vEPyYIMYSUeQ3LpTvDO69tQYDiOuA,1915
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- genelastic/import_data/random_bundle.py,sha256=Fk4oudK42pboGI14aaJjh8tTJxSxYNyF_89BBJ532RY,13821
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+ genelastic/import_data/random_bundle.py,sha256=IR3XoKwKEfWAow9ZH8lb-vmCKvtnU6M-35de4JPiIgg,14811
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  genelastic/import_data/tags.py,sha256=N6_dGYqQy2QTN6AEzoEXPxRFmtq3GgTfpId-RjBstJY,4195
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  genelastic/import_data/wet_process.py,sha256=2SgN1yZFQA8Hb4ZNNeHpUhmeWlJDApqdjc_oq6ZF0jA,694
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  genelastic/import_data/wet_processes.py,sha256=mVUfFG0QUboTEoD3c-Hd1Z2_Tvid_yrKJG_XdC4n6oA,1535
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  genelastic/ui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- genelastic/ui/server.py,sha256=7QX-54tT7CbpKje34kVVXnktI0wuZJOSLUChxeUGd20,2805
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- genelastic/ui/settings.py,sha256=hmgDNMVKk_OkKSBKyV8Eth57ULCTINwzeBCFAH7DdeU,218
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- genelastic-0.7.0.dist-info/METADATA,sha256=dj4cFcq7LXEv9v-turnGvHnK2KZ4zXrDxG0YKe11zPU,3127
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- genelastic-0.7.0.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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- genelastic-0.7.0.dist-info/entry_points.txt,sha256=KHtfefg-7-v0MZ0jAcHrb6z3V6hq7UdCiYYIAlD6hIg,284
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- genelastic-0.7.0.dist-info/top_level.txt,sha256=ra4gCsuKH1d0sXygcnwD_u597ir6bYYxWTS7dkA6vdM,11
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- genelastic-0.7.0.dist-info/RECORD,,
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+ genelastic/ui/cli_start_ui.py,sha256=4on9dTtBJ5SeD78kOWdOaCcKC0YDe201d-t9tjocYzw,549
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+ genelastic/ui/routes.py,sha256=OHwWv80aA75Gk0q8RwzSv-ayYZNEeI6QYXJ6CzzHuy0,2852
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+ genelastic/ui/server.py,sha256=MY3Hzt5BleeeG7n72gFjIhu3lYytST7ZSROBAcrjlDw,347
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+ genelastic/ui/settings.py,sha256=5Xc9bxm42bwkgcRSb_klD0bCqhP4DrfMs4La63fCf0Q,164
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+ genelastic/ui/templates/analyses.html,sha256=dhdTGQeFuJPjQX0Qh31K0hp5wrU54F3D4hLWlgPLW-w,247
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+ genelastic/ui/templates/bi_processes.html,sha256=Z6jgXymgKjn1cOL9GccCcKWJPlr-28AzNmlcmZ62lXc,265
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+ genelastic/ui/templates/home.html,sha256=rNxZFpcY6bXANEDjfs7-lRghI0UfHzaBUHi3r91knns,99
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+ genelastic/ui/templates/layout.html,sha256=B5a2wzvvPD0muTA4ooStT8kvi8IeCl1nZFV9WAyeqdc,1023
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+ genelastic/ui/templates/version.html,sha256=v2XxGSPlwWERr-o1a-pdIstR5TllCmGROXy5h2ArafI,286
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+ genelastic/ui/templates/wet_processes.html,sha256=jM0X08_zk-a8insJDx8bnHKBLu5Xqa6D2-SauYwqEcI,270
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+ genelastic-0.8.0.dist-info/METADATA,sha256=kK2kz13jf_cWKCxn1wv8c1Ta_ZP8pZsocaIZ7BcDhMY,3286
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+ genelastic-0.8.0.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
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+ genelastic-0.8.0.dist-info/entry_points.txt,sha256=IxtkWdVpPE8PnjblebCvKrdw4FnTKmvcHzNJfchkQ-c,381
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+ genelastic-0.8.0.dist-info/top_level.txt,sha256=ra4gCsuKH1d0sXygcnwD_u597ir6bYYxWTS7dkA6vdM,11
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+ genelastic-0.8.0.dist-info/RECORD,,
{genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (75.8.0)
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+ Generator: setuptools (75.8.2)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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{genelastic-0.7.0.dist-info → genelastic-0.8.0.dist-info}/entry_points.txt RENAMED
@@ -3,4 +3,6 @@ gnl-data = genelastic.import_data.cli_gen_data:main
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  gnl-import = genelastic.import_data.cli_import:main
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  gnl-info = genelastic.import_data.cli_info:main
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  gnl-integrity = genelastic.import_data.cli_integrity:main
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+ gnl-start-api = genelastic.api.cli_start_api:main
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+ gnl-start-ui = genelastic.ui.cli_start_ui:main
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  gnl-validate = genelastic.import_data.cli_validate:main