gammasimtools 0.5.1__py3-none-any.whl → 0.6.1__py3-none-any.whl

{gammasimtools-0.5.1.dist-info → gammasimtools-0.6.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: gammasimtools
-Version: 0.5.1
+Version: 0.6.1
 Summary: Tools for the Simulation System of the CTA Observatory
 Author-email: simtools developers <simtools-developer@desy.de>
 License: BSD 3-Clause License
@@ -33,31 +33,37 @@ License: BSD 3-Clause License
         OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
         OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
         
+Project-URL: bug tracker, https://github.com/gammasim/simtools/issues
 Project-URL: documentation, https://gammasim.github.io/simtools/
 Project-URL: repository, https://github.com/gammasim/simtools
-Project-URL: bug tracker, https://github.com/gammasim/simtools/issues
 Classifier: Intended Audience :: Science/Research
-Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: BSD License
 Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
 Classifier: Topic :: Scientific/Engineering :: Astronomy
 Requires-Python: >=3.9
 Description-Content-Type: text/x-rst
 License-File: LICENSE
 Requires-Dist: astropy
 Requires-Dist: boost-histogram
+Requires-Dist: ctapipe
 Requires-Dist: eventio
 Requires-Dist: jsonschema
 Requires-Dist: matplotlib
 Requires-Dist: numpy
-Requires-Dist: pyyaml
 Requires-Dist: pymongo
 Requires-Dist: pyproj
+Requires-Dist: python-dotenv
+Requires-Dist: pyyaml
 Requires-Dist: scipy
-Requires-Dist: zstandard
+Requires-Dist: toml
 Provides-Extra: dev
+Requires-Dist: flake8 ; extra == 'dev'
 Requires-Dist: pre-commit ; extra == 'dev'
-Requires-Dist: pyflakes ; extra == 'dev'
+Requires-Dist: pylint ; extra == 'dev'
 Provides-Extra: doc
 Requires-Dist: numpydoc ; extra == 'doc'
 Requires-Dist: sphinx ; extra == 'doc'
@@ -65,14 +71,25 @@ Requires-Dist: sphinx-rtd-theme ; extra == 'doc'
 Provides-Extra: tests
 Requires-Dist: pytest ; extra == 'tests'
 Requires-Dist: pytest-cov ; extra == 'tests'
+Requires-Dist: pytest-random-order ; extra == 'tests'
+Requires-Dist: pytest-xdist ; extra == 'tests'
 
 ==============
 simtools
 ==============
 
+.. image:: https://img.shields.io/badge/License-BSD_3--Clause-blue.svg
+   :target: https://github.com/gammasim/simtools/blob/main/LICENSE
+
+.. image:: https://img.shields.io/github/v/release/gammasim/simtools
+   :target: https://github.com/gammasim/simtools/releases
+
 .. image:: https://zenodo.org/badge/195011575.svg
    :target: https://zenodo.org/badge/latestdoi/195011575
 
+.. image:: https://badge.fury.io/py/gammasimtools.svg
+    :target: https://badge.fury.io/py/gammasimtools
+
 .. image:: https://github.com/gammasim/simtools/actions/workflows/CI-unittests.yml/badge.svg
    :target: https://github.com/gammasim/simtools/actions/workflows/CI-unittests.yml
 
@@ -85,44 +102,79 @@ simtools
 .. image:: https://app.codacy.com/project/badge/Grade/a3f19df7454844059341edd0769e02a7
    :target: https://app.codacy.com/gh/gammasim/simtools/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade
 
-.. image:: https://codecov.io/gh/gammasim/simtools/branch/master/graph/badge.svg?token=AYAIRPARCH
+.. image:: https://codecov.io/gh/gammasim/simtools/graph/badge.svg?token=AYAIRPARCH
    :target: https://codecov.io/gh/gammasim/simtools
 
+Simulation tools and applications for the `Cherenkov Telescope Array (CTAO) <https://www.cta-observatory.org>`_.
+
+License: `BSD-3 <https://github.com/gammasim/simtools/blob/main/LICENSE>`_
 
-Prototype implementation of tools for the Simulation Pipeline of the `CTA Observatory <www.cta-observatory.org>`_:
+Useful links:
+`Documentation <https://gammasim.github.io/simtools/>`_
+`Source code <https://github.com/gammasim/simtools>`_
+`Issue tracker <https://github.com/gammasim/simtools/issues>`_
+`Citation <https://github.com/gammasim/simtools/blob/main/CITATION.cff>`_
 
-* libraries for simulation model management and model database interface;
-* applications for simulation model parameter derivation and validation;
-* standardized interfaces and data products independent of the underlying simulation software (e.g., `CORSIKA <https://www.iap.kit.edu/corsika/>`_, `sim_telarray <https://www.mpi-hd.mpg.de/hfm/~bernlohr/sim_telarray/>`_);
-* I/O and reporting tools for the MC simulation model parameter and production database.
+simtools provides:
+
+* libraries for simulation model management and model database interface
+* tools for the preparation and configuration of simulation productions
+* applications for simulation model parameter derivation and validation
+* standardized interfaces and data products independent of the underlying simulation software (e.g., `CORSIKA <https://www.iap.kit.edu/corsika/>`_, `sim_telarray <https://www.mpi-hd.mpg.de/hfm/~bernlohr/sim_telarray/>`_)
+* I/O and reporting tools for the MC simulation model parameter and production database
 
 simtools is one part of the CTAO Simulation Pipeline, which consist of the following components:
 
-- `CORSIKA <https://www.iap.kit.edu/corsika/>`_ air shower simulation code and the `sim_telarray <https://www.mpi-hd.mpg.de/hfm/~bernlohr/sim_telarray/>`_ telescope simulation code.
-- simtools for tools and application for model parameter and configuration management, database interfaces, validation, and production preparations.
-- databases, especially the model parameter database.
+- `CORSIKA <https://www.iap.kit.edu/corsika/>`_ air shower simulation code and the `sim_telarray <https://www.mpi-hd.mpg.de/hfm/~bernlohr/sim_telarray/>`_ telescope simulation code
+- `workflows <https://github.com/gammasim/workflows>`_ for setting, derivation and validation of simulation model parameters
+- `simulation model parameter and input data schema <https://github.com/gammasim/workflows/tree/main/schemas>`_
+- `databases <https://gammasim.github.io/simtools/databases.html>`_, especially the model parameter database
+
+simtools is under rapid development with continuous changes and additions planned.
+Please contact the developers before using it: simtools-developer@desy.de
+
+
+Quickstart
+==========
+
+.. warning::
+
+    The pip-installation of simtools provides limited functionality only
+    and is not as well tested as the conda/mamba installation.
+
+Install simtools with pypi (recommended for users):
+
+.. code-block:: bash
+
+    pip install gammasimtools
+
+Install simtools with mamba (recommended for developers):
+
+.. code-block:: bash
 
-This code is under rapid development. Please contact the developers if you want to use it.
+    git clone https://github.com/gammasim/simtools.git
+    cd simtools
+    mamba env create -f environment.yml
+    conda activate simtools
+    pip install -e .
 
-- Code: https://github.com/gammasim/simtools
-- Documentation: https://gammasim.github.io/simtools/
-- Model database access: contact developers.
+For more detail see the `Getting_Started <https://gammasim.github.io/simtools/getting_started.html>`_ section of the manual.
 
 Authors
 =======
 
-* Raul R Prado (raul.prado@desy.de)
-* Orel Gueta (orel.gueta@desy.de)
-* Victor B. Martins (victor.barbosa.martins@desy.de)
-* Gernot Maier (gernot.maier@desy.de)
+* Raul R Prado (DESY)
+* Orel Gueta (DESY)
+* Tobias Kleiner (DESY)
+* Victor B. Martins (DESY)
+* Gernot Maier (DESY)
 
 Citing this Software
 ====================
 
-Please cite this software if you use it for a publication.
-Please cite the `Zenodo record <https://doi.org/10.5281/zenodo.6346696>`_, see the `CITATION.cff <https://github.com/gammasim/simtools/blob/main/CITATION.cff>`_ file.
+Please cite this software if it use used for a publication, see the `Zenodo record <https://doi.org/10.5281/zenodo.6346696>`_ and `CITATION.cff <https://github.com/gammasim/simtools/blob/main/CITATION.cff>`_ .
 
-INSTALLATION:
-=============
+Acknowledgements
+================
 
-Follow the steps outlined in the `Getting Started <https://gammasim.github.io/simtools/getting_started.html>`_ of the manual.
+This project is supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - project number 460248186 (PUNCH4NFDI).

gammasimtools-0.6.1.dist-info/RECORD

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{gammasimtools-0.5.1.dist-info → gammasimtools-0.6.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.1)
+Generator: bdist_wheel (0.42.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

{gammasimtools-0.5.1.dist-info → gammasimtools-0.6.1.dist-info}/entry_points.txt

@@ -3,10 +3,12 @@ simtools-add-file-to-db = simtools.applications.add_file_to_db:main
 simtools-compare-cumulative-psf = simtools.applications.compare_cumulative_psf:main
 simtools-derive-mirror-rnda = simtools.applications.derive_mirror_rnda:main
 simtools-generate-corsika-histograms = simtools.applications.generate_corsika_histograms:main
+simtools-generate-default-metadata = simtools.applications.generate_default_metadata:main
+simtools-generate-simtel-array-histograms = simtools.applications.generate_simtel_array_histograms:main
 simtools-get-file-from-db = simtools.applications.get_file_from_db:main
 simtools-get-parameter = simtools.applications.get_parameter:main
 simtools-make-regular-arrays = simtools.applications.make_regular_arrays:main
-simtools-plot-layout-array = simtools.applications.plot_layout_array:main
+simtools-plot-array-layout = simtools.applications.plot_array_layout:main
 simtools-plot-simtel-histograms = simtools.applications.plot_simtel_histograms:main
 simtools-print-array-elements = simtools.applications.print_array_elements:main
 simtools-produce-array-config = simtools.applications.produce_array_config:main
@@ -17,5 +19,5 @@ simtools-submit-data-from-external = simtools.applications.submit_data_from_exte
 simtools-tune-psf = simtools.applications.tune_psf:main
 simtools-validate-camera-efficiency = simtools.applications.validate_camera_efficiency:main
 simtools-validate-camera-fov = simtools.applications.validate_camera_fov:main
+simtools-validate-file-using-schema = simtools.applications.validate_file_using_schema:main
 simtools-validate-optics = simtools.applications.validate_optics:main
-simtools-validate-schema-files = simtools.applications.validate_schema_files:main

simtools/_version.py

@@ -1,4 +1,16 @@
 # file generated by setuptools_scm
 # don't change, don't track in version control
-__version__ = version = '0.5.1'
-__version_tuple__ = version_tuple = (0, 5, 1)
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple, Union
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+else:
+    VERSION_TUPLE = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+
+__version__ = version = '0.6.1'
+__version_tuple__ = version_tuple = (0, 6, 1)

simtools/applications/add_file_to_db.py

@@ -23,7 +23,7 @@
         The DB to insert the files to. \
         The choices are either the default CTA simulation DB or a sandbox for testing.
     verbosity (str, optional)
-        Log level to print (default=INFO).
+        Log level to print.
 
     Example
     -------
@@ -66,6 +66,7 @@ def _user_confirm():
             return answer == "y"
         except EOFError:
             return False
+    return False
 
 
 def main():

simtools/applications/compare_cumulative_psf.py

@@ -30,11 +30,11 @@
     telescope (str, required)
         Telescope model name (e.g. LST-1, SST-D, ...).
     model_version (str, optional)
-        Model version (default=prod4).
+        Model version.
     src_distance (float, optional)
-        Source distance in km (default=10).
+        Source distance in km.
     zenith (float, optional)
-        Zenith angle in deg (default=20).
+        Zenith angle in deg.
     data (str, optional)
         Name of the data file with the measured cumulative PSF.
     pars (str, optional)
@@ -42,7 +42,7 @@
     test (activation mode, optional)
         If activated, application will be faster by simulating fewer photons.
     verbosity (str, optional)
-        Log level to print (default=INFO).
+        Log level to print.
 
     Example
     -------
@@ -71,9 +71,6 @@
 
         d80 in cm = 3.3662565358159013
 
-    .. todo::
-
-        * Change default model to default (after this feature is implemented in db_handler)
 """
 
 import logging
@@ -86,8 +83,8 @@ import numpy as np
 import yaml
 
 import simtools.utils.general as gen
-from simtools import io_handler
 from simtools.configuration import configurator
+from simtools.io_operations import io_handler
 from simtools.model.telescope_model import TelescopeModel
 from simtools.ray_tracing import RayTracing
 from simtools.visualization import visualize
@@ -117,13 +114,11 @@ def main():
     )
     config.parser.add_argument(
         "--src_distance",
-        help="Source distance in km (default=10)",
+        help="Source distance in km",
         type=float,
         default=10,
     )
-    config.parser.add_argument(
-        "--zenith", help="Zenith angle in deg (default=20)", type=float, default=20.0
-    )
+    config.parser.add_argument("--zenith", help="Zenith angle in deg", type=float, default=20.0)
     config.parser.add_argument(
         "--data", help="Data file name with the measured PSF vs radius [cm]", type=str
     )
@@ -138,7 +133,7 @@ def main():
 
     # Output directory to save files related directly to this app
     _io_handler = io_handler.IOHandler()
-    output_dir = _io_handler.get_output_directory(label, dir_type="application-plots")
+    output_dir = _io_handler.get_output_directory(label, sub_dir="application-plots")
 
     tel_model = TelescopeModel(
         site=args_dict["site"],
@@ -181,7 +176,7 @@ def main():
     # Simulated cumulative PSF
     data_to_plot[r"sim$\_$telarray"] = im.get_cumulative_data(radius * u.cm)
 
-    fig = visualize.plot_1D(data_to_plot)
+    fig = visualize.plot_1d(data_to_plot)
     fig.gca().set_ylim(0, 1.05)
 
     plot_file_name = label + "_" + tel_model.name + "_cumulative_PSF"
@@ -192,7 +187,7 @@ def main():
 
     # Plotting image
     data_to_plot = im.get_image_data()
-    fig = visualize.plot_hist_2D(data_to_plot, bins=80)
+    fig = visualize.plot_hist_2d(data_to_plot, bins=80)
     circle = plt.Circle((0, 0), im.get_psf(0.8) / 2, color="k", fill=False, lw=2, ls="--")
     fig.gca().add_artist(circle)
     fig.gca().set_aspect("equal")

simtools/applications/db_development_tools/add_new_parameter_to_db.py

@@ -12,6 +12,8 @@
 
 import logging
 
+import astropy.units as u
+
 import simtools.utils.general as gen
 from simtools import db_handler
 from simtools.configuration import configurator
@@ -30,12 +32,13 @@ def main():
     db = db_handler.DatabaseHandler(mongo_db_config=db_config)
 
     # epsgs = [32628, 32719]
-    parameter = {"camera_filter_incidence_angle": "sst_photon_incidence_angle_camera_window.ecsv"}
+    parameter = {
+        "mirror_panel_shape": 1,
+        "mirror_panel_diameter": 84.6 * u.cm,
+    }
 
     telescopes = [
         "South-SST-Structure-D",
-        "South-SST-Camera-D",
-        "South-SST-ASTRI-D",
     ]
 
     for telescope_now in telescopes:
@@ -56,8 +59,7 @@ def main():
                     value=par_value,
                     collection_name="telescopes",
                     Applicable=True,
-                    Type=str(str),
-                    File=True,
+                    File=False,
                     file_prefix="./",
                 )
                 pars = db.read_mongo_db(
@@ -68,7 +70,11 @@ def main():
                     collection_name="telescopes",
                     write_files=False,
                 )
-                assert pars[par_now]["Value"] == par_value
+                if isinstance(par_value, u.Quantity):
+                    assert pars[par_now]["Value"] == par_value.value
+                    assert pars[par_now]["units"] == par_value.unit.to_string()
+                else:
+                    assert pars[par_now]["Value"] == par_value
 
 
 if __name__ == "__main__":