gammasimtools 0.16.0__py3-none-any.whl → 0.17.0__py3-none-any.whl

simtools/visualization/plot_pixels.py

@@ -0,0 +1,681 @@
+#!/usr/bin/python3
+"""Functions for plotting pixel layout information."""
+
+import logging
+from pathlib import Path
+
+import astropy.units as u
+import matplotlib.colors as mcolors
+import matplotlib.patches as mpatches
+import matplotlib.pyplot as plt
+import numpy as np
+from matplotlib.collections import PatchCollection
+
+from simtools.db import db_handler
+from simtools.io_operations import io_handler
+from simtools.model.model_utils import is_two_mirror_telescope
+from simtools.utils import names
+from simtools.visualization import legend_handlers as leg_h
+from simtools.visualization import visualize
+
+logger = logging.getLogger(__name__)
+
+
+def plot(config, output_file, db_config=None):
+    """
+    Plot pixel layout based on configuration.
+
+    Parameters
+    ----------
+    config : dict
+        Configuration dictionary containing:
+        - file_name : str, name of camera config file
+        - column_x : str, x-axis label
+        - column_y : str, y-axis label
+        - parameter_version: str, version of the parameter
+        - telescope : str, name of the telescope
+    output_file : str
+        Path where to save the plot
+    db_config : dict, optional
+        Database configuration.
+
+    Returns
+    -------
+    None
+        The function saves the plot to the specified output file.
+    """
+    db = db_handler.DatabaseHandler(mongo_db_config=db_config)
+    db.export_model_file(
+        parameter=config["parameter"],
+        site=config["site"],
+        array_element_name=config.get("telescope"),
+        parameter_version=config.get("parameter_version"),
+        model_version=config.get("model_version"),
+        export_file_as_table=False,
+    )
+    data_file_path = Path(io_handler.IOHandler().get_output_directory() / f"{config['file_name']}")
+    fig = plot_pixel_layout_from_file(
+        data_file_path,
+        config["telescope"],
+        pixels_id_to_print=80,
+    )
+    visualize.save_figure(fig, output_file)
+    plt.close(fig)
+
+
+def plot_pixel_layout_from_file(dat_file_path, telescope_model_name, **kwargs):
+    """
+    Plot the pixel layout from a camera config file.
+
+    This function reads the pixel configuration from the specified camera config file and
+    generates a plot of the pixel layout for the given telescope model.
+
+    Parameters
+    ----------
+    dat_file_path : str or Path
+        Path to the camera config file containing pixel configuration
+    telescope_model_name : str
+        Name/model of the telescope
+    **kwargs
+        pixels_id_to_print : int
+            Number of pixel IDs to print in the plot
+        title : str
+            Plot title
+        xtitle : str
+            X-axis label
+        ytitle : str
+            Y-axis label
+
+    Returns
+    -------
+    matplotlib.figure.Figure
+        The generated figure
+    """
+    logger.info(f"Plotting pixel layout for {telescope_model_name} from {dat_file_path}")
+
+    pixel_data = _prepare_pixel_data(
+        dat_file_path,
+        telescope_model_name,
+    )
+
+    return _create_pixel_plot(
+        pixel_data,
+        telescope_model_name,
+        pixels_id_to_print=kwargs.get("pixels_id_to_print", 50),
+        title=kwargs.get("title"),
+        xtitle=kwargs.get("xtitle"),
+        ytitle=kwargs.get("ytitle"),
+    )
+
+
+def _prepare_pixel_data(dat_file_path, telescope_model_name):
+    """Prepare pixel data from sim_telarray camera configuration file.
+
+    This function reads the pixel configuration from the specified camera config file and
+    prepares the data for plotting, including applying any necessary rotations.
+
+    Parameters
+    ----------
+    dat_file_path : str or Path
+        Path to the camera config file containing pixel configuration
+    telescope_model_name : str
+        Name/model of the telescope
+
+    Returns
+    -------
+    dict
+        Dictionary containing pixel data
+    """
+    config = _read_pixel_config(dat_file_path)
+    x_pos = np.array(config["x"])
+    y_pos = np.array(config["y"])
+
+    if not is_two_mirror_telescope(telescope_model_name):
+        y_pos = -y_pos
+
+    rotate_angle = (
+        config.get("rotate_angle") if config.get("rotate_angle") is not None else (0.0 * u.deg)
+    )
+
+    # Apply telescope-specific adjustments
+    if "SST" in telescope_model_name or "SCT" in telescope_model_name:
+        total_rotation = (90 * u.deg) - (rotate_angle)
+    else:
+        total_rotation = (-90 * u.deg) - (rotate_angle)
+
+    # Apply rotation
+    rot_angle = total_rotation.to(u.rad).value
+    x_rot = x_pos * np.cos(rot_angle) - y_pos * np.sin(rot_angle)
+    y_rot = y_pos * np.cos(rot_angle) + x_pos * np.sin(rot_angle)
+    x_pos, y_pos = x_rot, y_rot
+
+    return {
+        "x": x_pos,
+        "y": y_pos,
+        "pixel_ids": config["pixel_ids"],
+        "pixels_on": config["pixels_on"],
+        "pixel_shape": config["pixel_shape"],
+        "pixel_diameter": config["pixel_diameter"],
+        "pixel_spacing": config["pixel_spacing"],
+        "module_number": config["module_number"],
+        "module_gap": config["module_gap"],
+        "rotation": total_rotation,
+    }
+
+
+def _create_pixel_plot(
+    pixel_data, telescope_model_name, pixels_id_to_print=50, title=None, xtitle=None, ytitle=None
+):
+    """
+    Create and configure the pixel layout plot.
+
+    Parameters
+    ----------
+    pixel_data : dict
+        Dictionary containing pixel configuration data
+    telescope_model_name : str
+        Name of telescope model
+    pixels_id_to_print : int, optional
+        Number of pixel IDs to print, default 50
+    title : str, optional
+        Plot title
+    xtitle : str, optional
+        X-axis label
+    ytitle : str, optional
+        Y-axis label
+
+    Returns
+    -------
+    matplotlib.figure.Figure
+        The generated figure
+    """
+    fig, ax = plt.subplots(figsize=(8, 8))
+
+    # Create patches
+    on_pixels, edge_pixels, off_pixels = _create_pixel_patches(
+        pixel_data["x"],
+        pixel_data["y"],
+        pixel_data["pixel_diameter"],
+        pixel_data["module_number"],
+        pixel_data["module_gap"],
+        pixel_data["pixel_spacing"],
+        pixel_data["pixel_shape"],
+        pixel_data["pixels_on"],
+        pixel_data["pixel_ids"],
+        pixels_id_to_print,
+        telescope_model_name,
+    )
+
+    # Combine all patches into a single collection
+    all_patches = on_pixels + edge_pixels + off_pixels
+    facecolors = [
+        "none"
+        if i < len(on_pixels)
+        else (*mcolors.to_rgb("brown"), 0.5)
+        if i < len(on_pixels) + len(edge_pixels)
+        else "black"
+        for i in range(len(on_pixels) + len(edge_pixels) + len(off_pixels))
+    ]
+    edgecolors = (
+        ["black"] * len(on_pixels)
+        + [(*mcolors.to_rgb("black"), 1)] * len(edge_pixels)
+        + ["black"] * len(off_pixels)
+    )
+    linewidths = [0.2] * len(all_patches)
+
+    # Add the combined collection
+    ax.add_collection(
+        PatchCollection(
+            all_patches,
+            facecolor=facecolors,
+            edgecolor=edgecolors,
+            linewidth=linewidths,
+            match_original=True,
+        )
+    )
+
+    # Configure plot with titles
+    _configure_plot(
+        ax,
+        pixel_data["x"],
+        pixel_data["y"],
+        rotation=pixel_data["rotation"],
+        title=title,
+        xtitle=xtitle,
+        ytitle=ytitle,
+    )
+    _add_legend(ax, on_pixels, off_pixels)
+
+    plt.tight_layout()
+    return fig
+
+
+def _read_pixel_config(dat_file_path):
+    """Read pixel configuration from a camera configuration file.
+
+    This function reads the pixel configuration from the specified camera config file and
+    returns it as a dictionary. It parses information such as pixel positions,
+    module numbers, and other relevant parameters.
+
+    Parameters
+    ----------
+    dat_file_path : str or Path
+        Path to the camera config file containing pixel configuration
+
+    Returns
+    -------
+    dict
+        config containing pixel data
+    """
+    config = {
+        "x": [],
+        "y": [],
+        "pixel_ids": [],
+        "pixels_on": [],
+        "pixel_shape": None,
+        "pixel_diameter": None,
+        "pixel_spacing": None,
+        "module_gap": None,
+        "trigger_groups": [],
+        "rotate_angle": None,
+        "module_number": [],
+    }
+
+    with open(dat_file_path, encoding="utf-8") as f:
+        for line in f:
+            line = line.strip()
+
+            if not line:
+                continue
+
+            # Parse specific information from the file
+            if line.startswith("Rotate"):
+                # Parse rotation angle from line like "Rotate 10.893" (u.deg)
+                config["rotate_angle"] = float(line.split()[1].strip()) * u.deg
+
+            elif line.startswith("PixType"):
+                parts = line.split()
+                config["pixel_shape"] = int(parts[5].strip())
+                config["pixel_diameter"] = float(parts[6].strip())
+
+            elif "Pixel spacing is" in line:
+                config["pixel_spacing"] = float(line.split("spacing is")[1].strip().split()[0])
+
+            elif "Between modules is an additional gap of" in line:
+                config["module_gap"] = float(line.split("gap of")[1].strip().split()[0])
+
+            elif line.startswith("Pixel"):
+                parts = line.split()
+                config["x"].append(float(parts[3].strip()))
+                config["y"].append(float(parts[4].strip()))
+                config["module_number"].append(float(parts[5].strip()))
+                config["pixel_ids"].append(int(parts[1].strip()))
+                config["pixels_on"].append(int(parts[9].strip()) != 0)
+
+    config["pixel_spacing"] = (
+        config["pixel_diameter"] if config["pixel_spacing"] is None else config["pixel_spacing"]
+    )
+    config["module_gap"] = 0.0 if config["module_gap"] is None else config["module_gap"]
+
+    return config
+
+
+def _create_patch(x, y, diameter, shape):
+    """Create a single matplotlib patch for a pixel.
+
+    This function creates a matplotlib patch (shape) for a single pixel based on
+    its position, diameter, and shape type. Supported shapes are circles, squares,
+    and hexagons.
+
+    Parameters
+    ----------
+    x, y : float
+        Center coordinates of the pixel
+    diameter : float
+        Diameter of the pixel
+    shape : int
+        Pixel shape type:
+        0: circular
+        1: hexagonal (flat x)
+        2: square
+        3: hexagonal (flat y)
+
+    Returns
+    -------
+    matplotlib.patches.Patch
+        The created patch object for the pixel
+    """
+    if shape == 0:  # Circular
+        return mpatches.Circle((x, y), radius=diameter / 2)
+    if shape in (1, 3):  # Hexagonal
+        return mpatches.RegularPolygon(
+            (x, y),
+            numVertices=6,
+            radius=diameter / np.sqrt(3),
+            orientation=np.deg2rad(30 if shape == 3 else 0),
+        )
+    # Square
+    return mpatches.Rectangle((x - diameter / 2, y - diameter / 2), width=diameter, height=diameter)
+
+
+def _is_edge_pixel(
+    x, y, x_pos, y_pos, module_ids, pixel_spacing, module_gap, shape, current_module_id
+):
+    """
+    Determine if a pixel is on the edge based on neighbor count.
+
+    Parameters
+    ----------
+    x, y : float
+        Coordinates of the pixel being checked.
+    x_pos, y_pos : array-like
+        Arrays of x and y positions of all pixels.
+    module_ids : array-like
+        Array of module IDs corresponding to each pixel.
+    pixel_spacing : float
+        Center-to-center spacing between pixels.
+    module_gap : float
+        Additional gap between modules.
+    shape : int
+        Pixel shape type (0: circular, 1/3: hexagonal, 2: square).
+    current_module_id : int
+        Module ID of the current pixel.
+
+    Returns
+    -------
+    bool
+        True if the pixel is an edge pixel, False otherwise.
+    """
+    # Determine the maximum number of neighbors based on the pixel shape
+    if shape == 0:  # Circular
+        max_neighbors = 8
+    elif shape in (1, 3):  # Hexagonal
+        max_neighbors = 6
+    elif shape == 2:  # Square
+        max_neighbors = 4
+    else:
+        raise ValueError(f"Unsupported pixel shape: {shape}")
+
+    neighbor_count = _count_neighbors(
+        x, y, x_pos, y_pos, module_ids, pixel_spacing, module_gap, current_module_id
+    )
+
+    # A pixel is an edge pixel if it has fewer neighbors than the maximum
+    return neighbor_count < max_neighbors
+
+
+def _create_pixel_patches(
+    x_pos,
+    y_pos,
+    diameter,
+    module_number,
+    module_gap,
+    spacing,
+    shape,
+    pixels_on,
+    pixel_ids,
+    pixels_id_to_print,
+    telescope_model_name,
+):
+    """Create matplotlib patches for different pixel types.
+
+    This function creates the matplotlib patches (shapes) for all pixels in the
+    layout, categorizing them into "on", "edge", and "off" pixels based on their
+    status and position.
+
+    Parameters
+    ----------
+    x_pos, y_pos : array-like
+        X and Y coordinates of the pixel centers
+    diameter : float
+        Diameter of the pixels
+    module_number : array-like
+        Module numbers for each pixel
+    module_gap : float
+        Gap between modules
+    spacing : float
+        Pixel spacing
+    shape : array-like
+        Shape types for each pixel
+    pixels_on : array-like
+        Status indicating if each pixel is "on"
+    pixel_ids : array-like
+        Unique IDs for each pixel
+    pixels_id_to_print : int
+        Number of pixel IDs to print on the plot
+    telescope_model_name : str
+        Name of the telescope model
+
+    Returns
+    -------
+    tuple
+        Three lists of patches for "on", "edge", and "off" pixels
+    """
+    on_pixels, edge_pixels, off_pixels = [], [], []
+
+    array_element_type = names.get_array_element_type_from_name(telescope_model_name)
+    font_size = 2 if "SCT" in array_element_type else 4
+
+    for i, (x, y) in enumerate(zip(x_pos, y_pos)):
+        patch = _create_patch(x, y, diameter, shape)
+
+        if pixels_on[i]:
+            if _is_edge_pixel(
+                x, y, x_pos, y_pos, module_number, spacing, module_gap, shape, module_number[i]
+            ):
+                edge_pixels.append(patch)
+            else:
+                on_pixels.append(patch)
+        else:
+            off_pixels.append(patch)
+
+        if pixel_ids[i] < pixels_id_to_print:
+            plt.text(x, y, pixel_ids[i], ha="center", va="center", fontsize=font_size)
+
+    return on_pixels, edge_pixels, off_pixels
+
+
+def _count_neighbors(x, y, x_pos, y_pos, module_ids, pixel_spacing, module_gap, current_module_id):
+    """
+    Count the number of neighboring pixels within the appropriate distance.
+
+    Parameters
+    ----------
+    x, y : float
+        Coordinates of the pixel being checked.
+    x_pos, y_pos : array-like
+        Arrays of x and y positions of all pixels.
+    module_ids : array-like
+        Array of module IDs corresponding to each pixel.
+    pixel_spacing : float
+        Center-to-center spacing between pixels.
+    module_gap : float
+        Additional gap between modules.
+    current_module_id : int
+        Module ID of the current pixel.
+
+    Returns
+    -------
+    int
+        Number of neighboring pixels.
+    """
+    count = 0
+    tolerance = 1e-6
+
+    for x2, y2, module_id2 in zip(x_pos, y_pos, module_ids):
+        # Skip the pixel itself
+        if x == x2 and y == y2:
+            continue
+
+        # Calculate the distance between the current pixel and the potential neighbor
+        dist = np.sqrt((x - x2) ** 2 + (y - y2) ** 2)
+
+        # Determine max distance based on whether pixels are in same module
+        max_distance = (
+            pixel_spacing + (0 if current_module_id == module_id2 else module_gap) + tolerance
+        ) * 1.2
+
+        if dist <= max_distance:
+            count += 1
+
+    return count
+
+
+def _configure_plot(
+    ax,
+    x_pos,
+    y_pos,
+    rotation=0 * u.deg,
+    title=None,
+    xtitle=None,
+    ytitle=None,
+):
+    """Configure the plot with titles, labels, and limits.
+
+    Parameters
+    ----------
+    ax : matplotlib.axes.Axes
+        The axes to configure
+    x_pos, y_pos : array-like
+        Arrays of x and y positions of pixels
+    rotation : Astropy quantity in degrees, optional
+        Rotation angle in degrees, default 0
+    title : str, optional
+        Plot title
+    xtitle : str, optional
+        X-axis label
+    ytitle : str, optional
+        Y-axis label
+
+
+    Returns
+    -------
+    None
+        The function modifies the plot axes in place.
+    """
+    # First set the aspect ratio
+    ax.set_aspect("equal")
+
+    # Calculate the axis limits
+    x_min, x_max = min(x_pos), max(x_pos)
+    y_min, y_max = min(y_pos), max(y_pos)
+
+    # Add some padding
+    x_padding = (x_max - x_min) * 0.1
+    y_padding = (y_max - y_min) * 0.1
+
+    # Set limits with padding
+    ax.set_xlim(x_min - x_padding, x_max + x_padding)
+    ax.set_ylim(y_min - y_padding, y_max + y_padding)
+
+    plt.grid(True)
+    ax.set_axisbelow(True)
+
+    plt.xlabel(xtitle or "Horizontal scale [cm]", fontsize=18, labelpad=0)
+    plt.ylabel(ytitle or "Vertical scale [cm]", fontsize=18, labelpad=0)
+    ax.set_title(
+        title or "Pixel layout",
+        fontsize=15,
+        y=1.02,
+    )
+    plt.tick_params(axis="both", which="major", labelsize=15)
+
+    _add_coordinate_axes(ax, rotation)
+    x_min = min(x_pos) - (max(x_pos) - min(x_pos)) * 0.05
+    y_min = min(y_pos) - (max(y_pos) - min(y_pos)) * 0.05
+    ax.text(x_min, y_min, "For an observer facing the camera", fontsize=10, ha="left", va="bottom")
+
+
+def _add_coordinate_axes(ax, rotation=0 * u.deg):
+    """Add coordinate system axes to the plot."""
+    # Setup dimensions and positions
+    x_min, x_max = ax.get_xlim()
+    y_min, y_max = ax.get_ylim()
+    plot_size = min(x_max - x_min, y_max - y_min)
+    axis_length = plot_size * 0.08
+
+    x_origin = x_max - axis_length * 1.0
+    y_origin_az = y_min + axis_length * 2.5
+    y_origin_pix = y_min + axis_length * 1.2
+
+    arrow_style = {
+        "head_width": axis_length * 0.15,
+        "head_length": axis_length * 0.15,
+        "width": axis_length * 0.02,
+    }
+    arrow_length = 0.6
+    is_sst = abs(rotation - (90.0 * u.deg)).value < 1.0
+    az_direction = 1 if is_sst else -1
+
+    def add_arrow_label(ox, oy, dx, dy, label, offset, color="black", ha="center", va="center"):
+        """Adding arrows with label."""
+        ax.arrow(ox, oy, dx, dy, fc=color, ec=color, **arrow_style)
+        if np.sqrt(dx**2 + dy**2) > 0:  # If not zero vector
+            dir_unit = np.sqrt(dx**2 + dy**2)
+            ax.text(
+                ox + dx + dx / dir_unit * axis_length * offset,
+                oy + dy + dy / dir_unit * axis_length * offset,
+                label,
+                ha=ha,
+                va=va,
+                color=color,
+                fontsize=10,
+                fontweight="bold",
+            )
+
+    # Az-Alt axes
+    az_dx = az_direction * axis_length * arrow_length
+    add_arrow_label(
+        x_origin,
+        y_origin_az,
+        az_dx,
+        0,
+        "Az",
+        0.25,
+        "red",
+        ha="left" if az_direction > 0 else "right",
+    )
+    add_arrow_label(
+        x_origin, y_origin_az, 0, -axis_length * arrow_length, "Alt", 0.25, "red", va="top"
+    )
+
+    # Pixel coordinate axes
+    rot_angle = rotation.to(u.rad).value
+    x_direction = -1 if is_sst else 1
+    x_dir = x_direction * axis_length * arrow_length * np.cos(rot_angle)
+    y_dir = x_direction * axis_length * arrow_length * np.sin(rot_angle)
+    add_arrow_label(x_origin, y_origin_pix, x_dir, y_dir, "$\\mathrm{x}_\\mathrm{pix}$", 0.45)
+
+    y_dx = axis_length * arrow_length * np.sin(rot_angle)
+    y_dy = -axis_length * arrow_length * np.cos(rot_angle)
+    add_arrow_label(x_origin, y_origin_pix, y_dx, y_dy, "$\\mathrm{y}_\\mathrm{pix}$", 0.45)
+
+
+def _add_legend(ax, on_pixels, off_pixels):
+    """Add legend to the plot."""
+    legend_objects = [leg_h.PixelObject(), leg_h.EdgePixelObject()]
+    legend_labels = ["Pixel", "Edge pixel"]
+
+    # Choose handler based on pixel shape
+    is_hex = isinstance(on_pixels[0], mpatches.RegularPolygon)
+    legend_handler_map = {
+        leg_h.PixelObject: leg_h.HexPixelHandler() if is_hex else leg_h.SquarePixelHandler(),
+        leg_h.EdgePixelObject: leg_h.HexEdgePixelHandler()
+        if is_hex
+        else leg_h.SquareEdgePixelHandler(),
+        leg_h.OffPixelObject: leg_h.HexOffPixelHandler()
+        if is_hex
+        else leg_h.SquareOffPixelHandler(),
+    }
+
+    if off_pixels:
+        legend_objects.append(leg_h.OffPixelObject())
+        legend_labels.append("Disabled pixel")
+
+    ax.legend(
+        legend_objects,
+        legend_labels,
+        handler_map=legend_handler_map,
+        prop={"size": 11},
+        loc="upper right",
+    )