futurehouse-client 0.3.17.dev56__py3-none-any.whl → 0.3.18__py3-none-any.whl

futurehouse_client/models/__init__.py

@@ -3,10 +3,15 @@ from .app import (
     DockerContainerConfiguration,
     FramePath,
     JobDeploymentConfig,
+    PQATaskResponse,
     RuntimeConfig,
     Stage,
     Step,
+    TaskQueue,
+    TaskQueuesConfig,
     TaskRequest,
+    TaskResponse,
+    TaskResponseVerbose,
 )
 
 __all__ = [
@@ -14,8 +19,13 @@ __all__ = [
     "DockerContainerConfiguration",
     "FramePath",
     "JobDeploymentConfig",
+    "PQATaskResponse",
     "RuntimeConfig",
     "Stage",
     "Step",
+    "TaskQueue",
+    "TaskQueuesConfig",
     "TaskRequest",
+    "TaskResponse",
+    "TaskResponseVerbose",
 ]

futurehouse_client/models/app.py

@@ -1,6 +1,9 @@
+import copy
 import json
 import os
 import re
+from collections.abc import Mapping
+from datetime import datetime
 from enum import StrEnum, auto
 from pathlib import Path
 from typing import TYPE_CHECKING, Any, ClassVar, Self, cast
@@ -646,3 +649,96 @@ class TaskRequest(BaseModel):
     runtime_config: RuntimeConfig | None = Field(
         default=None, description="All optional runtime parameters for the job"
     )
+
+
+class SimpleOrganization(BaseModel):
+    id: int
+    name: str
+    display_name: str
+
+
+class TaskResponse(BaseModel):
+    """Base class for task responses. This holds attributes shared over all futurehouse jobs."""
+
+    model_config = ConfigDict(extra="ignore")
+
+    status: str
+    query: str
+    user: str | None = None
+    created_at: datetime
+    job_name: str
+    public: bool
+    shared_with: list[SimpleOrganization] | None = None
+    build_owner: str | None = None
+    environment_name: str | None = None
+    agent_name: str | None = None
+    task_id: UUID | None = None
+
+    @model_validator(mode="before")
+    @classmethod
+    def validate_fields(cls, original_data: Mapping[str, Any]) -> Mapping[str, Any]:
+        data = copy.deepcopy(original_data)  # Avoid mutating the original data
+        # Extract fields from environment frame state
+        if not isinstance(data, dict):
+            return data
+        # TODO: We probably want to remove these two once we define the final names.
+        data["job_name"] = data.get("crow")
+        data["query"] = data.get("task")
+        data["task_id"] = cast(UUID, data.get("id")) if data.get("id") else None
+        if not (metadata := data.get("metadata", {})):
+            return data
+        data["environment_name"] = metadata.get("environment_name")
+        data["agent_name"] = metadata.get("agent_name")
+        return data
+
+
+class PQATaskResponse(TaskResponse):
+    model_config = ConfigDict(extra="ignore")
+
+    answer: str | None = None
+    formatted_answer: str | None = None
+    answer_reasoning: str | None = None
+    has_successful_answer: bool | None = None
+    total_cost: float | None = None
+    total_queries: int | None = None
+
+    @model_validator(mode="before")
+    @classmethod
+    def validate_pqa_fields(cls, original_data: Mapping[str, Any]) -> Mapping[str, Any]:
+        data = copy.deepcopy(original_data)  # Avoid mutating the original data
+        if not isinstance(data, dict):
+            return data
+        if not (env_frame := data.get("environment_frame", {})):
+            return data
+        state = env_frame.get("state", {}).get("state", {})
+        response = state.get("response", {})
+        answer = response.get("answer", {})
+        usage = state.get("info", {}).get("usage", {})
+
+        # Add additional PQA specific fields to data so that pydantic can validate the model
+        data["answer"] = answer.get("answer")
+        data["formatted_answer"] = answer.get("formatted_answer")
+        data["answer_reasoning"] = answer.get("answer_reasoning")
+        data["has_successful_answer"] = answer.get("has_successful_answer")
+        data["total_cost"] = cast(float, usage.get("total_cost"))
+        data["total_queries"] = cast(int, usage.get("total_queries"))
+
+        return data
+
+    def clean_verbose(self) -> "TaskResponse":
+        """Clean the verbose response from the server."""
+        self.request = None
+        self.response = None
+        return self
+
+
+class TaskResponseVerbose(TaskResponse):
+    """Class for responses to include all the fields of a task response."""
+
+    model_config = ConfigDict(extra="allow")
+
+    public: bool
+    agent_state: list[dict[str, Any]] | None = None
+    environment_frame: dict[str, Any] | None = None
+    metadata: dict[str, Any] | None = None
+    shared_with: list[SimpleOrganization] | None = None

futurehouse_client/models/rest.py

@@ -1,3 +1,5 @@
+from enum import StrEnum, auto
+
 from pydantic import BaseModel, JsonValue
 
 
@@ -17,3 +19,18 @@ class StoreEnvironmentFrameRequest(BaseModel):
     current_agent_step: str
     state: JsonValue
     trajectory_timestep: int
+
+
+class ExecutionStatus(StrEnum):
+    QUEUED = auto()
+    IN_PROGRESS = "in progress"
+    FAIL = auto()
+    SUCCESS = auto()
+    CANCELLED = auto()
+
+    def is_terminal_state(self) -> bool:
+        return self in self.terminal_states()
+
+    @classmethod
+    def terminal_states(cls) -> set["ExecutionStatus"]:
+        return {cls.SUCCESS, cls.FAIL, cls.CANCELLED}

futurehouse_client/utils/auth.py

@@ -0,0 +1,92 @@
+import logging
+from collections.abc import Collection, Generator
+from typing import ClassVar, Final
+
+import httpx
+
+from futurehouse_client.models.app import APIKeyPayload, AuthType
+
+logger = logging.getLogger(__name__)
+
+INVALID_REFRESH_TYPE_MSG: Final[str] = (
+    "API key auth is required to refresh auth tokens."
+)
+JWT_TOKEN_CACHE_EXPIRY: int = 300  # seconds
+
+
+def _run_auth(
+    client: httpx.Client,
+    auth_type: AuthType = AuthType.API_KEY,
+    api_key: str | None = None,
+    jwt: str | None = None,
+) -> str:
+    auth_payload: APIKeyPayload | None
+    if auth_type == AuthType.API_KEY:
+        auth_payload = APIKeyPayload(api_key=api_key)
+    elif auth_type == AuthType.JWT:
+        auth_payload = None
+    try:
+        if auth_payload:
+            response = client.post("/auth/login", json=auth_payload.model_dump())
+            response.raise_for_status()
+            token_data = response.json()
+        elif jwt:
+            token_data = {"access_token": jwt, "expires_in": JWT_TOKEN_CACHE_EXPIRY}
+        else:
+            raise ValueError("JWT token required for JWT authentication.")
+
+        return token_data["access_token"]
+    except Exception as e:
+        raise Exception("Failed to authenticate") from e  # noqa: TRY002
+
+
+class RefreshingJWT(httpx.Auth):
+    """Automatically (re-)inject a JWT and transparently retry exactly once when we hit a 401/403."""
+
+    RETRY_STATUSES: ClassVar[Collection[httpx.codes]] = {
+        httpx.codes.UNAUTHORIZED,
+        httpx.codes.FORBIDDEN,
+    }
+
+    def __init__(
+        self,
+        auth_client: httpx.Client,
+        auth_type: AuthType = AuthType.API_KEY,
+        api_key: str | None = None,
+        jwt: str | None = None,
+    ):
+        self.auth_type = auth_type
+        self.auth_client = auth_client
+        self.api_key = api_key
+        self._jwt = _run_auth(
+            client=auth_client,
+            jwt=jwt,
+            auth_type=auth_type,
+            api_key=api_key,
+        )
+
+    def refresh_token(self) -> None:
+        if self.auth_type == AuthType.JWT:
+            logger.error(INVALID_REFRESH_TYPE_MSG)
+            raise ValueError(INVALID_REFRESH_TYPE_MSG)
+        self._jwt = _run_auth(
+            client=self.auth_client,
+            auth_type=self.auth_type,
+            api_key=self.api_key,
+        )
+
+    def auth_flow(
+        self, request: httpx.Request
+    ) -> Generator[httpx.Request, httpx.Response, None]:
+        request.headers["Authorization"] = f"Bearer {self._jwt}"
+        response = yield request
+
+        # If it failed, refresh once and replay the request
+        if response.status_code in self.RETRY_STATUSES:
+            logger.info(
+                "Received %s, refreshing token and retrying …",
+                response.status_code,
+            )
+            self.refresh_token()
+            request.headers["Authorization"] = f"Bearer {self._jwt}"
+            yield request  # second (and final) attempt, again or use a while loop

futurehouse_client/utils/general.py

@@ -0,0 +1,29 @@
+import asyncio
+from collections.abc import Awaitable, Iterable
+from typing import TypeVar
+
+from tqdm.asyncio import tqdm
+
+T = TypeVar("T")
+
+
+async def gather_with_concurrency(
+    n: int | asyncio.Semaphore, coros: Iterable[Awaitable[T]], progress: bool = False
+) -> list[T]:
+    """
+    Run asyncio.gather with a concurrency limit.
+
+    SEE: https://stackoverflow.com/a/61478547/2392535
+    """
+    semaphore = asyncio.Semaphore(n) if isinstance(n, int) else n
+
+    async def sem_coro(coro: Awaitable[T]) -> T:
+        async with semaphore:
+            return await coro
+
+    if progress:
+        return await tqdm.gather(
+            *(sem_coro(c) for c in coros), desc="Gathering", ncols=0
+        )
+
+    return await asyncio.gather(*(sem_coro(c) for c in coros))

{futurehouse_client-0.3.17.dev56.dist-info → futurehouse_client-0.3.18.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: futurehouse-client
-Version: 0.3.17.dev56
+Version: 0.3.18
 Summary: A client for interacting with endpoints of the FutureHouse service.
 Author-email: FutureHouse technical staff <hello@futurehouse.org>
 Classifier: Operating System :: OS Independent
@@ -19,6 +19,7 @@ Requires-Dist: litellm==1.67.4.post1
 Requires-Dist: pydantic
 Requires-Dist: python-dotenv
 Requires-Dist: tenacity
+Requires-Dist: tqdm>=4.62
 Provides-Extra: dev
 Requires-Dist: black; extra == "dev"
 Requires-Dist: jupyter; extra == "dev"
@@ -30,6 +31,7 @@ Requires-Dist: pylint; extra == "dev"
 Requires-Dist: pylint-per-file-ignores; extra == "dev"
 Requires-Dist: pylint-pydantic; extra == "dev"
 Requires-Dist: pytest; extra == "dev"
+Requires-Dist: pytest-asyncio; extra == "dev"
 Requires-Dist: pytest-rerunfailures; extra == "dev"
 Requires-Dist: pytest-subtests; extra == "dev"
 Requires-Dist: pytest-timeout; extra == "dev"
@@ -49,9 +51,9 @@ Documentation and tutorials for futurehouse-client, a client for interacting wit
 - [Quickstart](#quickstart)
 - [Functionalities](#functionalities)
 - [Authentication](#authentication)
-- [Task submission](#task-submission)
+- [Simple task running](#simple-task-running)
 - [Task Continuation](#task-continuation)
-- [Task retrieval](#task-retrieval)
+- [Asynchronous tasks](#asynchronous-tasks)
 
 <!--TOC-->
 
@@ -78,19 +80,17 @@ task_data = {
     "query": "Which neglected diseases had a treatment developed by artificial intelligence?",
 }
 
-task_run_id = client.create_task(task_data)
-
-task_status = client.get_task(task_run_id)
+task_response = client.run_tasks_until_done(task_data)
 ```
 
-A quickstart example can be found in the [client_notebook.ipynb](https://github.com/Future-House/futurehouse-client-docs/blob/main/docs/client_notebook.ipynb) file, where we show how to submit and retrieve a job task, pass runtime configuration to the agent, and ask follow-up questions to the previous job.
+A quickstart example can be found in the [client_notebook.ipynb](https://futurehouse.gitbook.io/futurehouse-cookbook/futurehouse-client/docs/client_notebook) file, where we show how to submit and retrieve a job task, pass runtime configuration to the agent, and ask follow-up questions to the previous job.
 
 ## Functionalities
 
 FutureHouse client implements a RestClient (called `FutureHouseClient`) with the following functionalities:
 
-- [Task submission](#task-submission): `create_task(TaskRequest)`
-- [Task status](#task-status): `get_task(task_id)`
+- [Simple task running](#simple-task-running): `run_tasks_until_done(TaskRequest)` or `await arun_tasks_until_done(TaskRequest)`
+- [Asynchronous tasks](#asynchronous-tasks): `get_task(task_id)` or `aget_task(task_id)` and `create_task(TaskRequest)` or `acreate_task(TaskRequest)`
 
 To create a `FutureHouseClient`, you need to pass an FutureHouse platform api key (see [Authentication](#authentication)):
 
@@ -106,9 +106,9 @@ client = FutureHouseClient(
 
 In order to use the `FutureHouseClient`, you need to authenticate yourself. Authentication is done by providing an API key, which can be obtained directly from your [profile page in the FutureHouse platform](https://platform.futurehouse.org/profile).
 
-## Task submission
+## Simple task running
 
-In the futurehouse platform, we define the deployed combination of an agent and an environment as a `job`. To invoke a job, we need to submit a `task` (also called a `query`) to it.
+In the FutureHouse platform, we define the deployed combination of an agent and an environment as a `job`. To invoke a job, we need to submit a `task` (also called a `query`) to it.
 `FutureHouseClient` can be used to submit tasks/queries to available jobs in the FutureHouse platform. Using a `FutureHouseClient` instance, you can submit tasks to the platform by calling the `create_task` method, which receives a `TaskRequest` (or a dictionary with `kwargs`) and returns the task id.
 Aiming to make the submission of tasks as simple as possible, we have created a `JobNames` `enum` that contains the available task types.
 
@@ -118,10 +118,10 @@ The available supported jobs are:
 | `JobNames.CROW` | `job-futurehouse-paperqa2` | Fast Search | Ask a question of scientific data sources, and receive a high-accuracy, cited response. Built with [PaperQA2](https://github.com/Future-House/paper-qa). |
 | `JobNames.FALCON` | `job-futurehouse-paperqa2-deep` | Deep Search | Use a plethora of sources to deeply research. Receive a detailed, structured report as a response. |
 | `JobNames.OWL` | `job-futurehouse-hasanyone` | Precedent Search | Formerly known as HasAnyone, query if anyone has ever done something in science. |
+| `JobNames.PHOENIX` | `job-futurehouse-phoenix` | Chemistry Tasks | A new iteration of ChemCrow, Phoenix uses cheminformatics tools to do chemistry. Good for planning synthesis and design of new molecules. |
 | `JobNames.DUMMY` | `job-futurehouse-dummy` | Dummy Task | This is a dummy task. Mainly for testing purposes. |
 
-Using `JobNames`, the client automatically adapts the job name to the current stage.
-The task submission looks like this:
+Using `JobNames`, the task submission looks like this:
 
 ```python
 from futurehouse_client import FutureHouseClient, JobNames
@@ -135,10 +135,73 @@ task_data = {
     "query": "Has anyone tested therapeutic exerkines in humans or NHPs?",
 }
 
-task_id = client.create_task(task_data)
+task_response = client.run_tasks_until_done(task_data)
+
+print(task_response.answer)
+```
+
+Or if running async code:
+
+```python
+import asyncio
+from futurehouse_client import FutureHouseClient, JobNames
+
+
+async def main():
+    client = FutureHouseClient(
+        api_key="your_api_key",
+    )
+
+    task_data = {
+        "name": JobNames.OWL,
+        "query": "Has anyone tested therapeutic exerkines in humans or NHPs?",
+    }
+
+    task_response = await client.arun_tasks_until_done(task_data)
+    print(task_response.answer)
+    return task_id
+
+
+# For Python 3.7+
+if __name__ == "__main__":
+    task_id = asyncio.run(main())
 ```
 
-`TaskRequest` has the following fields:
+Note that in either the sync or the async code, collections of tasks can be given to the client to run them in a batch:
+
+```python
+import asyncio
+from futurehouse_client import FutureHouseClient, JobNames
+
+
+async def main():
+    client = FutureHouseClient(
+        api_key="your_api_key",
+    )
+
+    task_data = [
+        {
+            "name": JobNames.OWL,
+            "query": "Has anyone tested therapeutic exerkines in humans or NHPs?",
+        },
+        {
+            "name": JobNames.CROW,
+            "query": "Are there any clinically validated therapeutic exerkines for humans?",
+        },
+    ]
+
+    task_responses = await client.arun_tasks_until_done(task_data)
+    print(task_responses[0].answer)
+    print(task_responses[1].answer)
+    return task_id
+
+
+# For Python 3.7+
+if __name__ == "__main__":
+    task_id = asyncio.run(main())
+```
+
+`TaskRequest` can also be used to submit jobs and it has the following fields:
 
 | Field          | Type          | Description                                                                                                         |
 | -------------- | ------------- | ------------------------------------------------------------------------------------------------------------------- |
@@ -148,13 +211,67 @@ task_id = client.create_task(task_data)
 | runtime_config | RuntimeConfig | Optional runtime parameters for the job                                                                             |
 
 `runtime_config` can receive a `AgentConfig` object with the desired kwargs. Check the available `AgentConfig` fields in the [LDP documentation](https://github.com/Future-House/ldp/blob/main/src/ldp/agent/agent.py#L87). Besides the `AgentConfig` object, we can also pass `timeout` and `max_steps` to limit the execution time and the number of steps the agent can take.
-Other especialised configurations are also available but are outside the scope of this documentation.
+
+```python
+from futurehouse_client import FutureHouseClient, JobNames
+from futurehouse_client.models.app import TaskRequest
+
+client = FutureHouseClient(
+    api_key="your_api_key",
+)
+
+task_response = client.run_tasks_until_done(
+    TaskRequest(
+        name=JobNames.OWL,
+        query="Has anyone tested therapeutic exerkines in humans or NHPs?",
+    )
+)
+
+print(task_response.answer)
+```
+
+A `TaskResponse` will be returned from using our agents. For Owl, Crow, and Falcon, we default to a subclass, `PQATaskResponse` which has some key attributes:
+
+| Field                 | Type | Description                                                                     |
+| --------------------- | ---- | ------------------------------------------------------------------------------- |
+| answer                | str  | Answer to your query.                                                           |
+| formatted_answer      | str  | Specially formatted answer with references.                                     |
+| has_successful_answer | bool | Flag for whether the agent was able to find a good answer to your query or not. |
+
+If using the `verbose` setting, much more data can be pulled down from your `TaskResponse`, which will exist across all agents (not just Owl, Crow, and Falcon).
+
+```python
+from futurehouse_client import FutureHouseClient, JobNames
+from futurehouse_client.models.app import TaskRequest
+
+client = FutureHouseClient(
+    api_key="your_api_key",
+)
+
+task_response = client.run_tasks_until_done(
+    TaskRequest(
+        name=JobNames.OWL,
+        query="Has anyone tested therapeutic exerkines in humans or NHPs?",
+    ),
+    verbose=True,
+)
+
+print(task_response.environment_frame)
+```
+
+In that case, a `TaskResponseVerbose` will have the following fields:
+
+| Field             | Type | Description                                                                                                            |
+| ----------------- | ---- | ---------------------------------------------------------------------------------------------------------------------- | --- |
+| agent_state       | dict | Large object with all agent states during the progress of your task.                                                   |
+| environment_frame | dict | Large nested object with all environment data, for PQA environments it includes contexts, paper metadata, and answers. |
+| metadata          | dict | Extra metadata about your query.                                                                                       |     |
 
 ## Task Continuation
 
 Once a task is submitted and the answer is returned, FutureHouse platform allow you to ask follow-up questions to the previous task.
 It is also possible through the platform API.
-To accomplish that, we can use the `runtime_config` we discussed in the [Task submission](#task-submission) section.
+To accomplish that, we can use the `runtime_config` we discussed in the [Simple task running](#simple-task-running) section.
 
 ```python
 from futurehouse_client import FutureHouseClient, JobNames
@@ -173,12 +290,12 @@ continued_task_data = {
     "runtime_config": {"continued_task_id": task_id},
 }
 
-continued_task_id = client.create_task(continued_task_data)
+task_result = client.run_tasks_until_done(continued_task_data)
 ```
 
-## Task retrieval
+## Asynchronous tasks
 
-Once a task is submitted, you can retrieve it by calling the `get_task` method, which receives a task id and returns a `TaskResponse` object.
+Sometimes you may want to submit many jobs, while querying results at a later time. In this way you can do other things while waiting for a response. The platform API supports this as well rather than waiting for a result.
 
 ```python
 from futurehouse_client import FutureHouseClient
@@ -187,9 +304,13 @@ client = FutureHouseClient(
     api_key="your_api_key",
 )
 
-task_id = "task_id"
+task_data = {"name": JobNames.CROW, "query": "How many species of birds are there?"}
+
+task_id = client.create_task(task_data)
+
+# move on to do other things
 
 task_status = client.get_task(task_id)
 ```
 
-`task_status` contains information about the task. For instance, its `status`, `task`, `environment_name` and `agent_name`, and other fields specific to the job.
+`task_status` contains information about the task. For instance, its `status`, `task`, `environment_name` and `agent_name`, and other fields specific to the job. You can continually query the status until it's `success` before moving on.

futurehouse_client-0.3.18.dist-info/RECORD

@@ -0,0 +1,17 @@
+futurehouse_client/__init__.py,sha256=ddxO7JE97c6bt7LjNglZZ2Ql8bYCGI9laSFeh9MP6VU,344
+futurehouse_client/clients/__init__.py,sha256=tFWqwIAY5PvwfOVsCje4imjTpf6xXNRMh_UHIKVI1_0,320
+futurehouse_client/clients/job_client.py,sha256=uNkqQbeZw7wbA0qDWcIOwOykrosza-jev58paJZ_mbA,11150
+futurehouse_client/clients/rest_client.py,sha256=CwgyjYj-i6U0aVXb1GkxP6KSxR5tVrlXIDE9WIHYtds,43435
+futurehouse_client/models/__init__.py,sha256=5x-f9AoM1hGzJBEHcHAXSt7tPeImST5oZLuMdwp0mXc,554
+futurehouse_client/models/app.py,sha256=24lCnpOtxQNzvcc1HJyP62wfertvTuZ30sX_vrBCUnk,26611
+futurehouse_client/models/client.py,sha256=n4HD0KStKLm6Ek9nL9ylP-bkK10yzAaD1uIDF83Qp_A,1828
+futurehouse_client/models/rest.py,sha256=lgwkMIXz0af-49BYSkKeS7SRqvN3motqnAikDN4YGTc,789
+futurehouse_client/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+futurehouse_client/utils/auth.py,sha256=tgWELjKfg8eWme_qdcRmc8TjQN9DVZuHHaVXZNHLchk,2960
+futurehouse_client/utils/general.py,sha256=A_rtTiYW30ELGEZlWCIArO7q1nEmqi8hUlmBRYkMQ_c,767
+futurehouse_client/utils/module_utils.py,sha256=aFyd-X-pDARXz9GWpn8SSViUVYdSbuy9vSkrzcVIaGI,4955
+futurehouse_client/utils/monitoring.py,sha256=UjRlufe67kI3VxRHOd5fLtJmlCbVA2Wqwpd4uZhXkQM,8728
+futurehouse_client-0.3.18.dist-info/METADATA,sha256=AJVzzXq77PTe-Hg31YXy-KWFAb5IXiZhyC08YlbRec4,12760
+futurehouse_client-0.3.18.dist-info/WHEEL,sha256=zaaOINJESkSfm_4HQVc5ssNzHCPXhJm0kEUakpsEHaU,91
+futurehouse_client-0.3.18.dist-info/top_level.txt,sha256=TRuLUCt_qBnggdFHCX4O_BoCu1j2X43lKfIZC-ElwWY,19
+futurehouse_client-0.3.18.dist-info/RECORD,,

{futurehouse_client-0.3.17.dev56.dist-info → futurehouse_client-0.3.18.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.3.1)
+Generator: setuptools (80.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

futurehouse_client-0.3.17.dev56.dist-info/RECORD

@@ -1,15 +0,0 @@
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