frontveg 0.3.3__py3-none-any.whl → 0.3.5__py3-none-any.whl

frontveg/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.3.3'
-__version_tuple__ = version_tuple = (0, 3, 3)
+__version__ = version = '0.3.5'
+__version_tuple__ = version_tuple = (0, 3, 5)

frontveg/utils.py

@@ -1,7 +1,7 @@
 import os
 from collections import Counter
 
-import matplotlib.pyplot as plt
+# import matplotlib.pyplot as plt
 import numpy as np
 from scipy.signal import find_peaks
 from tqdm import tqdm
@@ -73,22 +73,22 @@ def minimum_betw_max(dico_, visua=False):
     x_min = x_min_range[min_index]
     y_min = y_min_range[min_index]
 
-    if visua:
-        # Tracé
-        plt.scatter(x, y, color="blue")
-        plt.plot(x_fit, y_fit, color="red", label="Polynomial regression")
-        plt.scatter(
-            x_fit[top_two_peaks],
-            y_fit[top_two_peaks],
-            color="green",
-            label="Local maximum",
-        )
-        plt.scatter(x_min, y_min, color="orange", s=100, label="Local minimum")
-        plt.legend()
-        plt.xlabel("Depth pixel")
-        plt.ylabel("Count")
-        # plt.title('Approximation et détection des points maximum')
-        plt.show()
+    # if visua:
+    #     # Tracé
+    #     plt.scatter(x, y, color="blue")
+    #     plt.plot(x_fit, y_fit, color="red", label="Polynomial regression")
+    #     plt.scatter(
+    #         x_fit[top_two_peaks],
+    #         y_fit[top_two_peaks],
+    #         color="green",
+    #         label="Local maximum",
+    #     )
+    #     plt.scatter(x_min, y_min, color="orange", s=100, label="Local minimum")
+    #     plt.legend()
+    #     plt.xlabel("Depth pixel")
+    #     plt.ylabel("Count")
+    #     # plt.title('Approximation et détection des points maximum')
+    #     plt.show()
     return x_min, y_min
 
 

{frontveg-0.3.3.dist-info → frontveg-0.3.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: frontveg
-Version: 0.3.3
+Version: 0.3.5
 Summary: Segmentation of vegetation located to close to camera
 Author: Herearii Metuarea
 Author-email: herearii.metuarea@univ-angers.fr
@@ -63,6 +63,7 @@ Requires-Dist: torchvision>=0.18.1
 Requires-Dist: hydra-core==1.3.2
 Requires-Dist: iopath>=0.1.10
 Requires-Dist: pillow>=9.4.0
+Requires-Dist: sam2==1.1.0
 Provides-Extra: testing
 Requires-Dist: tox; extra == "testing"
 Requires-Dist: pytest; extra == "testing"
@@ -87,7 +88,7 @@ A plugin for foreground vegetation segmentation, tailored for trellised vegetati
 
 ----------------------------------
 
-The method was developped by Herearii Metuarea, PHENET PhD at LARIS (French laboratory located in Angers, France) and Abdoul-Djalil Ousseini Hamza, AgroEcoPhen Engineer at IRHS (French Institute located in INRAe Angers, France) in Imhorphen team (bioimaging research group lead) under the supervision of Eric Duchêne (Research Engineer), Morgane Roth (Research Engineer) and David Rousseau (Full professor). This plugin was written by Herearii Metuarea and was designed in the context of the european project PHENET.
+The method was developped by Herearii Metuarea, PHENET PhD at LARIS (French laboratory located in Angers, France) and Abdoul Djalil Ousseini Hamza, AgroEcoPhen Engineer at IRHS (French Institute located in INRAe Angers, France) in Imhorphen team (bioimaging research group lead) under the supervision of Eric Duchêne (Research Engineer), Morgane Roth (Research Engineer) and David Rousseau (Full professor). This plugin was written by Herearii Metuarea and was designed in the context of the european project PHENET.
 
 ![Data Warehouse](https://github.com/user-attachments/assets/4a110408-5854-4e8c-b655-4cb588434b79)
 
@@ -110,12 +111,16 @@ You can install `frontveg` via [pip]:
 
     pip install frontveg
 
-
-
 To install latest development version :
 
     pip install git+https://github.com/hereariim/frontveg.git
 
+GPU is mandatory for time processing and models running (especially Grounding-DINO). Please visit the official PyTorch website to get the appropriate installation command: 👉 https://pytorch.org/get-started/locally
+
+**Exemple : GPU (CUDA 12.1)**
+
+    pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu121
+
 ## Description
 
 This plugin is a tool to perform image inference. This plugin contained two steps of image processing. First, from RGB image, a depth map is estimated and then thresholded based on the estimated depth histogram modes to detect foreground and background regions in image. Second, a Grounding DINO model detects foliage in the foreground. The output is a binary mask where white colour are associated to foliage in the foreground.
@@ -131,7 +136,7 @@ Imhorphen team, bioimaging research group
 42 rue George Morel, Angers, France
 
 - Pr David Rousseau, david.rousseau@univ-angers.fr
-- Abdoul-djalil ousseini-hamza, abdoul-djalil.ousseini-hamza@inrae.fr
+- Abdoul Djalil Ousseini Hamza, abdoul-djalil.ousseini-hamza@inrae.fr
 - Herearii Metuarea, herearii.metuarea@univ-angers.fr
 
 ## Contributing

frontveg-0.3.5.dist-info/RECORD

@@ -0,0 +1,13 @@
+frontveg/__init__.py,sha256=SMjZ6NE7A_L_kvRcBpXyhEk699XQmyxj-ObW7aTbykM,170
+frontveg/_version.py,sha256=qmTn4w-xTKk8dVv-032b430C-ilxMTkr9Q0HieU18N8,511
+frontveg/_widget.py,sha256=dFxQ8sq3-a4uY6qiwQagn-ap5KAO8uSzFMHLEcflhe8,5243
+frontveg/napari.yaml,sha256=OkN3aOH_hk_7t1tGwFRIpD27JevP9aVZi5hwzV-T_ks,497
+frontveg/utils.py,sha256=Xd0aSe7b611q-bnUC610PT66mBbR6Chqmbdm4Wfx8iA,3139
+frontveg/_tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+frontveg/_tests/test_widget.py,sha256=a17ZZ2qGykvJH25OFr8dFVbL9mqlxRFj9O_7HCviLFw,2199
+frontveg-0.3.5.dist-info/licenses/LICENSE,sha256=0lkjW6HrdHzd-N8u7gPsFwCQUO8tfNuAQRj95e2bgyE,1492
+frontveg-0.3.5.dist-info/METADATA,sha256=gkfci-_z940K9Mowo6ypNvZwhOF6tHB4NCZnA3ilpAs,8538
+frontveg-0.3.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+frontveg-0.3.5.dist-info/entry_points.txt,sha256=VMaRha_yYtIcJAdA0suCmR0of0MZJfUaUn2aKSYtR0I,50
+frontveg-0.3.5.dist-info/top_level.txt,sha256=skkajXDCaVFNYqsXXqsUv6fqlA6Pl-2cLwKJO52ldBI,9
+frontveg-0.3.5.dist-info/RECORD,,

frontveg-0.3.3.dist-info/RECORD

@@ -1,13 +0,0 @@
-frontveg/__init__.py,sha256=SMjZ6NE7A_L_kvRcBpXyhEk699XQmyxj-ObW7aTbykM,170
-frontveg/_version.py,sha256=cRYgYV4ttw-FMlrA4-5pzcSpTjS7X8uVa-nRTEADKW4,511
-frontveg/_widget.py,sha256=dFxQ8sq3-a4uY6qiwQagn-ap5KAO8uSzFMHLEcflhe8,5243
-frontveg/napari.yaml,sha256=OkN3aOH_hk_7t1tGwFRIpD27JevP9aVZi5hwzV-T_ks,497
-frontveg/utils.py,sha256=CE0hijfr46-BhNvAE7i5OG2zRdtS1haiOle4HpbmoAw,3105
-frontveg/_tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-frontveg/_tests/test_widget.py,sha256=a17ZZ2qGykvJH25OFr8dFVbL9mqlxRFj9O_7HCviLFw,2199
-frontveg-0.3.3.dist-info/licenses/LICENSE,sha256=0lkjW6HrdHzd-N8u7gPsFwCQUO8tfNuAQRj95e2bgyE,1492
-frontveg-0.3.3.dist-info/METADATA,sha256=8kYOph2jnnZTJfZkqNnIm9ft4ULLnpFkjev7Pp2kRQc,8167
-frontveg-0.3.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-frontveg-0.3.3.dist-info/entry_points.txt,sha256=VMaRha_yYtIcJAdA0suCmR0of0MZJfUaUn2aKSYtR0I,50
-frontveg-0.3.3.dist-info/top_level.txt,sha256=skkajXDCaVFNYqsXXqsUv6fqlA6Pl-2cLwKJO52ldBI,9
-frontveg-0.3.3.dist-info/RECORD,,