freealg 0.6.2__py3-none-any.whl → 0.6.3__py3-none-any.whl

freealg/__version__.py

@@ -1 +1 @@
-__version__ = "0.6.2"
+__version__ = "0.6.3"

freealg/_decompress.py

@@ -855,16 +855,6 @@ def decompress(freeform, alpha, x, roots_init=None, method='newton',
     density
     stieltjes
 
-    Notes
-    -----
-
-    Work in progress.
-
-    References
-    ----------
-
-    .. [1] tbd
-
     Examples
     --------
 

freealg/_pade.py

@@ -13,7 +13,6 @@
 
 import numpy
 from numpy.linalg import lstsq
-from itertools import product
 from scipy.optimize import least_squares, differential_evolution
 
 __all__ = ['fit_pade', 'eval_pade']

freealg/_util.py

@@ -127,26 +127,37 @@ def kde(eig, xs, lam_m, lam_p, h, kernel='beta', plot=False):
     freealg.supp
     freealg.sample
 
+    References
+    ----------
+
+    .. [1] `R-package documentation for Beta kernel
+           <https://search.r-project.org/CRAN/refmans/DELTD/html/Beta.html>`__
+
+    .. [2] Chen, S. X. (1999). Beta Kernel estimators for density functions.
+           *Computational Statistics and Data Analysis* 31 p. 131--145.
+
     Notes
     -----
 
-    In Beta kernel density estimation, the shape parameters "a" and "b" of the
-    Beta(a, b)) distribution are computed for each data point "u" as:
+    In Beta kernel density estimation, the shape parameters :math:`a` and
+    :math:`b` of the :math:`\\mathrm{Beta}(a, b)` distribution are computed
+    for each data point :math:`u` as:
+
+    .. math::
 
         a = (u / h) + 1.0
         b = ((1.0 - u) / h) + 1.0
 
-    This is a standard way of using Beta kernel (see R-package documentation:
-    https://search.r-project.org/CRAN/refmans/DELTD/html/Beta.html
+    This is a standard way of using Beta kernel (see R-package documentation
+    [1]_). These equations are derived from *moment matching* method, where
 
-    These equations are derived from "moment matching" method, where
+    .. math::
 
-        Mean(Beta(a,b)) = u
-        Var(Beta(a,b)) = (1-u) u h
+        \\mathrm{Mean}(\\mathrm{Beta}(a,b)) = u
+        \\mathrm{Var}(\\mathrm{Beta}(a,b)) = (1-u) u h
 
-    Solving these two equations for "a" and "b" yields the relations above.
-    See paper (page 134)
-    https://www.songxichen.com/Uploads/Files/Publication/Chen-CSD-99.pdf
+    Solving these two equations for :math:`a` and :math:`b` yields the
+    relations above. See [2]_ (page 134).
     """
 
     if kernel == 'gaussian':

freealg/distributions/_marchenko_pastur.py

@@ -283,8 +283,8 @@ class MarchenkoPastur(object):
         if numpy.any(not_mask):
 
             sign = -1 if alt_branch else 1
-            A = self.lam * sigma**2 * z
-            B = z - sigma**2 * (1 - self.lam)
+            A = self.lam * sigma**2 * z[not_mask]
+            B = z[not_mask] - sigma**2 * (1 - self.lam)
             D = B**2 - 4 * A
             sqrtD = numpy.sqrt(D)
             m1 = (-B + sqrtD) / (2 * A)

freealg/freeform.py

@@ -74,16 +74,6 @@ class FreeForm(object):
         Parameters for the :func:`supp` function can also be prescribed
         here when ``support=None``.
 
-    Notes
-    -----
-
-    TBD
-
-    References
-    ----------
-
-    .. [1] Reference.
-
     Attributes
     ----------
 
@@ -749,16 +739,6 @@ class FreeForm(object):
         density
         hilbert
 
-        Notes
-        -----
-
-        Notes.
-
-        References
-        ----------
-
-        .. [1] tbd
-
         Examples
         --------
 
@@ -973,16 +953,6 @@ class FreeForm(object):
         density
         stieltjes
 
-        Notes
-        -----
-
-        Work in progress.
-
-        References
-        ----------
-
-        .. [1] tbd
-
         Examples
         --------
 

{freealg-0.6.2.dist-info → freealg-0.6.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: freealg
-Version: 0.6.2
+Version: 0.6.3
 Summary: Free probability for large matrices
 Home-page: https://github.com/ameli/freealg
 Download-URL: https://github.com/ameli/freealg/archive/main.zip
@@ -142,19 +142,17 @@ code, we also welcome feature requests and bug reports.
 How to Cite
 ===========
 
-If you use this work, please cite our `arXiv paper <https://arxiv.org/abs/2506.11994>`__.
+If you use this work, please cite our `paper <https://openreview.net/pdf?id=2CeGVUpOd7>`__.
 
   .. code::
 
-      @article{spectral2025,
-          title={Spectral Estimation with Free Decompression},
-          author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
-          year={2025},
-          eprint={2506.11994},
-          archivePrefix={arXiv},
-          primaryClass={stat.ML},
-          url={https://arxiv.org/abs/2506.11994},
-          journal={arXiv preprint arXiv:2506.11994},
+      @inproceedings{
+            AMELI-2025,
+            title={Spectral Estimation with Free Decompression},
+            author={Siavash Ameli and Chris van der Heide and Liam Hodgkinson and Michael W. Mahoney},
+            booktitle={The Thirty-ninth Annual Conference on Neural Information Processing Systems},
+            year={2025},
+            url={https://openreview.net/forum?id=2CeGVUpOd7}
       }
 
 

{freealg-0.6.2.dist-info → freealg-0.6.3.dist-info}/RECORD

@@ -1,26 +1,26 @@
 freealg/__init__.py,sha256=muuYCvlsXjuX1W67YGFca9nFxprFsALLyB3CrJpXFnY,728
-freealg/__version__.py,sha256=jFlbxEJFS0G44LE-yXXVSwXACA1J_NyYDk5E20_2zpc,22
+freealg/__version__.py,sha256=zYiFHqR7JwbvdK9dvKrh-RTNfUqjHUwC4CTcFAPVYLc,22
 freealg/_chebyshev.py,sha256=zkyVA8NLf7uUKlJdLz4ijd_SurdsqUgkA5nHGWSybaE,6916
 freealg/_damp.py,sha256=k2vtBtWOxQBf4qXaWu_En81lQBXbEO4QbxxWpvuVhdE,1802
-freealg/_decompress.py,sha256=bFhQx--uptWJ7OjVwEs_tWYT6mLijBKJ9EbrD24Sbl0,32199
+freealg/_decompress.py,sha256=_i37IToZ6oN9DdLXOM8r4y92EbazzcylhcnWwUOpaj0,32108
 freealg/_jacobi.py,sha256=z0X6Ws_BEo_h8EQBzDNHGFhLF9F2PUmnGeBVs0bNL7w,10709
 freealg/_linalg.py,sha256=0BzJNTXiY1VH3OKrCFgbE0QHLgRoKyiILsBWtnygFGc,13141
-freealg/_pade.py,sha256=u8BxaD-WX-19nHRf_zlXZU4H2O-9Y48T1Kue5Vl2IGw,10340
+freealg/_pade.py,sha256=_y89r7rVc2E5lgiN_ZjnxzW2IaVevWwpq5ISor2NVOo,10310
 freealg/_plot_util.py,sha256=GKvmc1wjVGeqoomrULPbzBEt6P86FdoR2idBLYh5EDY,20068
 freealg/_sample.py,sha256=rhfd_83TCTvvJh8cG8TzEYO4OR8VbtND2YCNtWEhMa8,3205
 freealg/_series.py,sha256=33LLCUe4svmV0eWyzhP_XClfDzccQHTW9WBJlYlLfHY,11475
 freealg/_support.py,sha256=nxDa2OFlWBgjD0_1qoSMWG7kub6-GIuxIA04n5bdaYw,6614
-freealg/_util.py,sha256=EKKg_1VCo3-juBXFOg4SviFhuvO30VFM3zwXHIJ4qtA,7952
-freealg/freeform.py,sha256=Gh-Thc6Xbpcz1bQgQVXDiCIen6lB6K63Qosr-eh73gI,43847
+freealg/_util.py,sha256=fcs18RuWsmWvpSiwvSLFBYNiTLvYkD6LwjeuIGnyV7E,8251
+freealg/freeform.py,sha256=GMlgCqrM-3tb_QZrZszVxC4pGUvQbYtOnbJBkc2PHQg,43544
 freealg/distributions/__init__.py,sha256=t_yZyEkW_W_tSV9IvgYXtVASxD2BEdiNVXcV2ebMy8M,579
 freealg/distributions/_kesten_mckay.py,sha256=FB7UtMxkn3Olg6XmjUKrh5njhdttMo6HwW78fDBTDJk,20078
-freealg/distributions/_marchenko_pastur.py,sha256=1aNU2uPI5WIdAxmPOeMl9THZVJHKYRTswh68QgUmrbE,17171
+freealg/distributions/_marchenko_pastur.py,sha256=PtmOV9npUcbI1HgjeH8mjGlbYYCdrlNtLuQegO2r4NE,17191
 freealg/distributions/_meixner.py,sha256=-gDYBShAXxtfe3vY4-2bSvp7QM8uU9eeDC9v_YVNxrk,17579
 freealg/distributions/_wachter.py,sha256=Kv1qQF1MOFCli5-IDT5lZYRhqRXh4xCugEq7KSYbE4g,17079
 freealg/distributions/_wigner.py,sha256=FBGhSijbex5oFztnV6laEGAiSWGdn1z9g9lSfhgQ_sQ,16058
-freealg-0.6.2.dist-info/licenses/AUTHORS.txt,sha256=0b67Nz4_JgIzUupHJTAZxu5QdSUM_HRM_X_w4xCb17o,30
-freealg-0.6.2.dist-info/licenses/LICENSE.txt,sha256=J-EEYEtxb3VVf_Bn1TYfWnpY5lMFIM15iLDDcnaDTPA,1443
-freealg-0.6.2.dist-info/METADATA,sha256=WdL5K1KCLaUxT4_c_ZA_Ug1kUE9jLDB6jbLaMbnG3yA,5530
-freealg-0.6.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-freealg-0.6.2.dist-info/top_level.txt,sha256=eR2wrgYwDdnnJ9Zf5PruPqe4kQav0GMvRsqct6y00Q8,8
-freealg-0.6.2.dist-info/RECORD,,
+freealg-0.6.3.dist-info/licenses/AUTHORS.txt,sha256=0b67Nz4_JgIzUupHJTAZxu5QdSUM_HRM_X_w4xCb17o,30
+freealg-0.6.3.dist-info/licenses/LICENSE.txt,sha256=J-EEYEtxb3VVf_Bn1TYfWnpY5lMFIM15iLDDcnaDTPA,1443
+freealg-0.6.3.dist-info/METADATA,sha256=FhjParK9WyqcDNCu2OBGe_uVssCT-HZhuM5zm0Yzhyw,5516
+freealg-0.6.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+freealg-0.6.3.dist-info/top_level.txt,sha256=eR2wrgYwDdnnJ9Zf5PruPqe4kQav0GMvRsqct6y00Q8,8
+freealg-0.6.3.dist-info/RECORD,,