fractal-server 2.9.0a2__py3-none-any.whl → 2.9.0a4__py3-none-any.whl

fractal_server/tasks/v2/utils_background.py

@@ -119,30 +119,6 @@ def _prepare_tasks_metadata(
     return task_list
 
 
-def check_task_files_exist(task_list: list[TaskCreateV2]) -> None:
-    """
-    Check that the modules listed in task commands point to existing files.
-
-    Args:
-        task_list:
-    """
-    for _task in task_list:
-        if _task.command_non_parallel is not None:
-            _task_path = _task.command_non_parallel.split()[1]
-            if not Path(_task_path).exists():
-                raise FileNotFoundError(
-                    f"Task `{_task.name}` has `command_non_parallel` "
-                    f"pointing to missing file `{_task_path}`."
-                )
-        if _task.command_parallel is not None:
-            _task_path = _task.command_parallel.split()[1]
-            if not Path(_task_path).exists():
-                raise FileNotFoundError(
-                    f"Task `{_task.name}` has `command_parallel` "
-                    f"pointing to missing file `{_task_path}`."
-                )
-
-
 def get_current_log(logger_file_path: str) -> str:
     with open(logger_file_path, "r") as f:
         return f.read()

fractal_server/zip_tools.py

@@ -122,9 +122,26 @@ def _zip_folder_to_file_and_remove(folder: str) -> None:
     3. Checks if the folder can be safely deleted using the
         `_folder_can_be_deleted` function. If so, deletes the original folder.
     """
-    _create_zip(folder, f"{folder}_tmp.zip")
-    shutil.move(f"{folder}_tmp.zip", f"{folder}.zip")
+
+    tmp_zipfile = f"{folder}_tmp.zip"
+    zipfile = f"{folder}.zip"
+
+    try:
+        logger.info(f"Start creating temporary zip file at '{tmp_zipfile}'.")
+        _create_zip(folder, tmp_zipfile)
+        logger.info("Zip file created.")
+    except Exception as e:
+        logger.error(
+            f"Error while creating temporary zip file. Original error: '{e}'."
+        )
+        Path(tmp_zipfile).unlink(missing_ok=True)
+        return
+
+    logger.info(f"Moving temporary zip file to {zipfile}.")
+    shutil.move(tmp_zipfile, zipfile)
+    logger.info("Zip file moved.")
+
     if _folder_can_be_deleted(folder):
-        logger.info(f"Deleting folder '{folder}'...")
+        logger.info(f"Removing folder '{folder}'.")
         shutil.rmtree(folder)
-        logger.info(f"Deletion of folder '{folder}' completed.")
+        logger.info("Folder removed.")

{fractal_server-2.9.0a2.dist-info → fractal_server-2.9.0a4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: fractal-server
-Version: 2.9.0a2
+Version: 2.9.0a4
 Summary: Server component of the Fractal analytics platform
 Home-page: https://github.com/fractal-analytics-platform/fractal-server
 License: BSD-3-Clause

{fractal_server-2.9.0a2.dist-info → fractal_server-2.9.0a4.dist-info}/RECORD

@@ -1,4 +1,4 @@
-fractal_server/__init__.py,sha256=d0Y48obcx61ZaWA7ZS1o1kdZRZ6sJMhUfuKDOT5xPKU,24
+fractal_server/__init__.py,sha256=Y1rSgqglVGXD4u5k97z-tPhXn-XoXu0yguIqzQ4j9Os,24
 fractal_server/__main__.py,sha256=dEkCfzLLQrIlxsGC-HBfoR-RBMWnJDgNrxYTyzmE9c0,6146
 fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
 fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -26,11 +26,12 @@ fractal_server/app/models/v2/workflowtask.py,sha256=iDuJYk8kp4PNqGmbKRtGI7y-Qsbj
 fractal_server/app/routes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/routes/admin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/routes/admin/v1.py,sha256=5YxfWz2QK2spUKomnAteaMsWF9Ql-oHwMs1jhSjHznk,13319
-fractal_server/app/routes/admin/v2/__init__.py,sha256=zkdrk3mSQWfgTJugS8Sc_Q_xCAwfmHUfdRe0DTaYT80,521
+fractal_server/app/routes/admin/v2/__init__.py,sha256=KYrw0COmmMuIMp7c6YcYRXah4tEYplCWeROnPK1VTeg,681
 fractal_server/app/routes/admin/v2/job.py,sha256=DbkPmUk7V2iEGIlKa_xgC07cc3G8oNsONGDZ_aKq5zE,7589
 fractal_server/app/routes/admin/v2/project.py,sha256=luy-yiGX1JYTdPm1hpIdDUUqPm8xHuipLy9k2X6zu74,1223
 fractal_server/app/routes/admin/v2/task.py,sha256=Y0eujBgGhVapNXfW9azDxw4EBzLmEmCdh70y1RNQcb0,3895
 fractal_server/app/routes/admin/v2/task_group.py,sha256=ldMQ8OIUKEhr1a_BXiwgh4K3d1T299ZaDNJjbn_zAxc,7411
+fractal_server/app/routes/admin/v2/task_group_lifecycle.py,sha256=vDaTRX8AD8ESd-2CmT2rJPDDl4WxazxvSMdaUqcUPOY,9113
 fractal_server/app/routes/api/__init__.py,sha256=2IDheFi0OFdsUg7nbUiyahqybvpgXqeHUXIL2QtWrQQ,641
 fractal_server/app/routes/api/v1/__init__.py,sha256=Y2HQdG197J0a7DyQEE2jn53IfxD0EHGhzK1I2JZuEck,958
 fractal_server/app/routes/api/v1/_aux_functions.py,sha256=P9Q48thGH95w0h5cacYoibxqgiiLW4oqZ8rNJ2LIISY,13219
@@ -52,10 +53,10 @@ fractal_server/app/routes/api/v2/project.py,sha256=eWYFJ7F2ZYQcpi-_n-rhPF-Q4gJhz
 fractal_server/app/routes/api/v2/status.py,sha256=6N9DSZ4iFqbZImorWfEAPoyoFUgEruo4Hweqo0x0xXU,6435
 fractal_server/app/routes/api/v2/submit.py,sha256=jqYix7X6dUJn8w6RWasu1lOFf7T_CcXQlpVY38njE24,8688
 fractal_server/app/routes/api/v2/task.py,sha256=K0ik33t7vL8BAK5S7fqyJDNdRK4stGqb_73bSa8tvPE,7159
-fractal_server/app/routes/api/v2/task_collection.py,sha256=-DVhultvdI3Jh8Jq8W5np6Lnkh5oisjbKCwxFmwddmo,9820
+fractal_server/app/routes/api/v2/task_collection.py,sha256=_K7c-83jpmaLz1gXM_MbndskkmV6oo_ivg0mWP6hfvs,9621
 fractal_server/app/routes/api/v2/task_collection_custom.py,sha256=cctW61-C2QYF2KXluS15lLhZJS_kt30Ca6UGLFO32z0,6207
 fractal_server/app/routes/api/v2/task_group.py,sha256=Ove7Vr3p8GKtskHANAZh8TWwOw8dfbFCN2UQFv6DhqM,8136
-fractal_server/app/routes/api/v2/task_group_lifecycle.py,sha256=UODAv1kk8qgT7wvcVKK6eRs-fEBw3T1pPwmT6VkkAn4,7404
+fractal_server/app/routes/api/v2/task_group_lifecycle.py,sha256=SPUB-QHvADaJm3zyuPIyCg-TqbHujwiwr7RauvYGXJ0,8972
 fractal_server/app/routes/api/v2/workflow.py,sha256=vjCNRzMHaAB4YWbAEWGlELHXDN4GjtE26IkIiB15RGM,8682
 fractal_server/app/routes/api/v2/workflow_import.py,sha256=WJST1AZypvOTGUrjhomYVh4R2ow8RoGpuwzNiq81Pzc,10971
 fractal_server/app/routes/api/v2/workflowtask.py,sha256=ciHTwXXFiFnMF7ZpJ3Xs0q6YfuZrFvIjqndlzAEdZpo,6969
@@ -134,31 +135,31 @@ fractal_server/app/runner/v2/runner_functions_low_level.py,sha256=1fWvQ6YZUUnDhO
 fractal_server/app/runner/v2/task_interface.py,sha256=hT3p-bRGsLNAR_dNv_PYFoqzIF_EQtSsGwl38j1haYA,1824
 fractal_server/app/runner/versions.py,sha256=dSaPRWqmFPHjg20kTCHmi_dmGNcCETflDtDLronNanU,852
 fractal_server/app/schemas/__init__.py,sha256=stURAU_t3AOBaH0HSUbV-GKhlPKngnnIMoqWc3orFyI,135
-fractal_server/app/schemas/_validators.py,sha256=Ft-Ueol_rFwGjEebKVK2bUELm7w7bFG8MOpTamlY8Fs,3503
+fractal_server/app/schemas/_validators.py,sha256=T5EswIJAJRvawfzqWtPcN2INAfiBXyE4m0iwQm4ht-0,3149
 fractal_server/app/schemas/user.py,sha256=aUD8YAcfYTEO06TEUoTx4heVrXFiX7E2Mb8D2--4FsA,2130
 fractal_server/app/schemas/user_group.py,sha256=YwJvYgj-PI66LWy38CEd_FIZPsBV1_2N5zJPGFcFvBw,2143
 fractal_server/app/schemas/user_settings.py,sha256=TalISeEfCrtN8LgqbLx1Q8ZPoeiZnbksg5NYAVzkIqY,3527
 fractal_server/app/schemas/v1/__init__.py,sha256=CrBGgBhoemCvmZ70ZUchM-jfVAICnoa7AjZBAtL2UB0,1852
-fractal_server/app/schemas/v1/applyworkflow.py,sha256=uuIh7fHlHEL4yLqL-dePI6-nfCsqgBYATmht7w_KITw,4302
-fractal_server/app/schemas/v1/dataset.py,sha256=n71lNUO3JLy2K3IM9BZM2Fk1EnKQOTU7pm2s2rJ1FGY,3444
+fractal_server/app/schemas/v1/applyworkflow.py,sha256=dYArxQAOBdUIEXX_Ejz8b9fBhEYu1nMm6b_Z6_P6TgA,4052
+fractal_server/app/schemas/v1/dataset.py,sha256=DWFCxZjApcKt2M6UJMK0tmejXwUT09vjUULf2D7Y-f0,3293
 fractal_server/app/schemas/v1/dumps.py,sha256=67VXnyLh_0Ufo7rPM2jZ9P9rk0CnYcVAkilx_cLX6sg,1274
 fractal_server/app/schemas/v1/manifest.py,sha256=Yht7guhs0Pcl2U0RMOCbI_UHBZ9YO_YU0H8hxACx3TY,3829
-fractal_server/app/schemas/v1/project.py,sha256=TO2TjI4m9FO-A9IB9lUCld7E4Ld0k4MacLcyA9j6Qi4,1218
-fractal_server/app/schemas/v1/state.py,sha256=GYeOE_1PtDOgu5W4t_3gw3DBHXH2aCGzINRs2dp8_h4,472
+fractal_server/app/schemas/v1/project.py,sha256=Zxd-AguQQG9z2CfJ_sJh5SB9WcHPFbWpLgP_AhjOyZs,1067
+fractal_server/app/schemas/v1/state.py,sha256=tBXzp_qW2TNNNPBo-AWEaffEU-1GkMBtUoaMgiN_EL0,302
 fractal_server/app/schemas/v1/task.py,sha256=7BxOZ_qoRQ8n3YbQpDvB7VMcxB5fSYQmR5RLIWhuJ5U,3704
 fractal_server/app/schemas/v1/task_collection.py,sha256=uvq9bcMaGD_qHsh7YtcpoSAkVAbw12eY4DocIO3MKOg,3057
-fractal_server/app/schemas/v1/workflow.py,sha256=tuOs5E5Q_ozA8if7YPZ07cQjzqB_QMkBS4u92qo4Ro0,4618
+fractal_server/app/schemas/v1/workflow.py,sha256=oRKamLSuAgrTcv3gMMxGcotDloLL2c3NNgPA39UEmmM,4467
 fractal_server/app/schemas/v2/__init__.py,sha256=dzDsAzLLMgyQBa3b64n71K1u83tbBn9_Oloaqqv1tjA,2444
-fractal_server/app/schemas/v2/dataset.py,sha256=Jipcj9LiOOipAeM2Ew113wuNQ6CrbC1nf3KwnNApBco,2638
+fractal_server/app/schemas/v2/dataset.py,sha256=zRlcO0wDZahTW1PINdVEuARZ7GZUuEqqop7UdE3-5do,2470
 fractal_server/app/schemas/v2/dumps.py,sha256=s6dg-pHZFui6t2Ktm0SMxjKDN-v-ZqBHz9iTsBQF3eU,1712
-fractal_server/app/schemas/v2/job.py,sha256=oYSLYkQ0HL83QyjEGIaggtZ117FndzFlONMKWd9sTXM,3270
+fractal_server/app/schemas/v2/job.py,sha256=42V-bFfMvysRplwTKGsL_WshAVsWSM6yjFqypxwrY3k,3020
 fractal_server/app/schemas/v2/manifest.py,sha256=Uqtd7DbyOkf9bxBOKkU7Sv7nToBIFGUcfjY7rd5iO7c,6981
-fractal_server/app/schemas/v2/project.py,sha256=UXEA0UUUe0bFFOVLLmVtvDFLBO5vmD1JVI7EeTIcwDo,756
+fractal_server/app/schemas/v2/project.py,sha256=ABv9LSLVCq1QYthEhBvZOTn_4DFEC-7cH28tFGFdM7I,589
 fractal_server/app/schemas/v2/status.py,sha256=SQaUpQkjFq5c5k5J4rOjNhuQaDOEg8lksPhkKmPU5VU,332
 fractal_server/app/schemas/v2/task.py,sha256=FFAbYwDlqowB8gVMdjFVPVHvAM0T89PYLixUth49xfQ,6870
 fractal_server/app/schemas/v2/task_collection.py,sha256=yHpCRxoj6tKqCiQfUjaTj8SfCn1ChD_P6okfEOzyUDE,6518
 fractal_server/app/schemas/v2/task_group.py,sha256=e4NwFuOmiO0afoZLVsI_XHIpD_o_QWDpzlI7ZoNAYwo,3014
-fractal_server/app/schemas/v2/workflow.py,sha256=HSNQSrBRdoBzh8Igr76FUWCAWvVzykrqmUv1vGv-8og,2026
+fractal_server/app/schemas/v2/workflow.py,sha256=-KWvXnbHBFA3pj5n7mfSyLKJQSqkJmoziIEe7mpLl3M,1875
 fractal_server/app/schemas/v2/workflowtask.py,sha256=vDdMktYbHeYBgB5OuWSv6wRPRXWqvetkeqQ7IC5YtfA,5751
 fractal_server/app/security/__init__.py,sha256=8Xd4GxumZgvxEH1Vli3ULehwdesEPiaAbtffJvAEgNo,12509
 fractal_server/app/user_settings.py,sha256=aZgQ3i0JkHfgwLGW1ee6Gzr1ae3IioFfJKKSsSS8Svk,1312
@@ -202,7 +203,7 @@ fractal_server/migrations/versions/efa89c30e0a4_add_project_timestamp_created.py
 fractal_server/migrations/versions/f384e1c0cf5d_drop_task_default_args_columns.py,sha256=9BwqUS9Gf7UW_KjrzHbtViC880qhD452KAytkHWWZyk,746
 fractal_server/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/ssh/__init__.py,sha256=sVUmzxf7_DuXG1xoLQ1_00fo5NPhi2LJipSmU5EAkPs,124
-fractal_server/ssh/_fabric.py,sha256=Nwsc5uU2BcOE7t1AFFpytKUsZHfbQxB0uKF5HD-dycA,21647
+fractal_server/ssh/_fabric.py,sha256=O1Dxl6xlg9pvqdKyKqy18mYQlslJoJHapXtDMCzZcBA,21711
 fractal_server/string_tools.py,sha256=XtMNsr5R7GmgzmFi68zkKMedHs8vjGoVMMCXqWhIk9k,2568
 fractal_server/syringe.py,sha256=3qSMW3YaMKKnLdgnooAINOPxnCOxP7y2jeAQYB21Gdo,2786
 fractal_server/tasks/__init__.py,sha256=kadmVUoIghl8s190_Tt-8f-WBqMi8u8oU4Pvw39NHE8,23
@@ -215,30 +216,31 @@ fractal_server/tasks/v1/get_collection_data.py,sha256=5C22jp356rCH5IIC0J57wOu-DC
 fractal_server/tasks/v1/utils.py,sha256=HYFyNAyZofmf--mVgdwGC5TJpGShIWIDaS01yRr4HxM,1771
 fractal_server/tasks/v2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/tasks/v2/local/__init__.py,sha256=9RVItnS7OyLsJOuJjWMCicaky4ASUPQEYD4SzDs0hOE,141
-fractal_server/tasks/v2/local/collect.py,sha256=kTgMDiOX9qVDncmrgieOfYE71jqFwBpDgO1cbD5ZQVQ,12199
-fractal_server/tasks/v2/local/deactivate.py,sha256=PyJm3PoQrYOBCm0F6p6xD7Gx9Tfnn_YZlXY-j3Fi6pM,8975
-fractal_server/tasks/v2/local/reactivate.py,sha256=eTSrEoZ54_6ExviozxRTgjNsrESG9PbQW-TiGqNMJcA,6117
-fractal_server/tasks/v2/local/utils_local.py,sha256=JHHiS_SvPLSezxGWSWslMhLEWmMp9PepnzePXV6r0e8,1521
-fractal_server/tasks/v2/ssh/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-fractal_server/tasks/v2/ssh/collect.py,sha256=j50euINjxGS4S5-aYTIWwV34xydKvT6W5P9Vxv5TMuk,15263
-fractal_server/tasks/v2/ssh/deactivate.py,sha256=fwBCtj-8I_8s8Zd-nyQX7YaTjoPOK1pn07Tznvjbv8Y,31
-fractal_server/tasks/v2/ssh/reactivate.py,sha256=0pqK-g5uyykCkLsjYDVr8QTEBrIB31XQXvi0MQfqv-w,31
+fractal_server/tasks/v2/local/_utils.py,sha256=EvhmVwYjqaNyDCUMEsTWYOUXLgEwR1xr6bu32apCEI8,2491
+fractal_server/tasks/v2/local/collect.py,sha256=BbXSgxExPUxFxcmBs3ejwWzRae-sQgfbk3zZkAQg77Y,12190
+fractal_server/tasks/v2/local/deactivate.py,sha256=Tjooode2oXfaSLiJz7iSu-qC1OkeIJtOQeUvUo4K4Ts,8970
+fractal_server/tasks/v2/local/reactivate.py,sha256=R3rArAzUpMGf6xa3dGVwwXHW9WVDi5ia28AFisZsqNc,6112
+fractal_server/tasks/v2/ssh/__init__.py,sha256=aSQbVi6Ummt9QzcSLWNmSqYjfdxrn9ROmqgH6bDpI7k,135
+fractal_server/tasks/v2/ssh/_utils.py,sha256=2E-F_862zM6FZA-im-E8t8kjptWRIhBj1IDHC6QD1H8,2818
+fractal_server/tasks/v2/ssh/collect.py,sha256=ZOpz-v2t2kOAbbpdlsH_P_XjNtEh2TaC1dIZ1bBHwxw,12941
+fractal_server/tasks/v2/ssh/deactivate.py,sha256=YNJEcUPNuQ7H3I9EtWn84es2AY9Dnij388w6PQra4wc,10186
+fractal_server/tasks/v2/ssh/reactivate.py,sha256=brIa3XuoD7g9m9vIB7CSgog6KC9w8e45phLT-vSSXlI,7754
 fractal_server/tasks/v2/templates/1_create_venv.sh,sha256=PK0jdHKtQpda1zULebBaVPORt4t6V17wa4N1ohcj5ac,548
 fractal_server/tasks/v2/templates/2_pip_install.sh,sha256=RDDfbFnGOK3aRuHyXqDOUNCGullzAr0zS7BFqG1CJeE,1720
 fractal_server/tasks/v2/templates/3_pip_freeze.sh,sha256=JldREScEBI4cD_qjfX4UK7V4aI-FnX9ZvVNxgpSOBFc,168
 fractal_server/tasks/v2/templates/4_pip_show.sh,sha256=84NGHlg6JIbrQktgGKyfGsggPFzy6RBJuOmIpPUhsrw,1747
 fractal_server/tasks/v2/templates/5_get_venv_size_and_file_number.sh,sha256=q-6ZUvA6w6FDVEoSd9O63LaJ9tKZc7qAFH72SGPrd_k,284
 fractal_server/tasks/v2/templates/6_pip_install_from_freeze.sh,sha256=n9C8w76YraLbeTe7NhuLzvAQiJCm_akL3Mc3EMfxrHo,1007
-fractal_server/tasks/v2/utils_background.py,sha256=nAnel85xWIWPJjlv1XtRBJ59zoSjufvLobU8GlPRWUI,5155
+fractal_server/tasks/v2/utils_background.py,sha256=tikXhggqxdU7EnKdx2co3UwinlDazEjfOPQOXtO58zs,4240
 fractal_server/tasks/v2/utils_database.py,sha256=6r56yyFPnEBrXl6ncmO6D76znzISQCFZqCYcD-Ummd4,1213
 fractal_server/tasks/v2/utils_package_names.py,sha256=RDg__xrvQs4ieeVzmVdMcEh95vGQYrv9Hfal-5EDBM8,2393
 fractal_server/tasks/v2/utils_python_interpreter.py,sha256=-EWh3Y3VqHLDOWUO_wG_wknqmGqKAD0O2KTLhNjrZaI,948
 fractal_server/tasks/v2/utils_templates.py,sha256=C5WLuY3uGG2s53OEL-__H35-fmSlguwZx836BPFHBpE,2732
 fractal_server/urls.py,sha256=5o_qq7PzKKbwq12NHSQZDmDitn5RAOeQ4xufu-2v9Zk,448
 fractal_server/utils.py,sha256=utvmBx8K9I8hRWFquxna2pBaOqe0JifDL_NVPmihEJI,3525
-fractal_server/zip_tools.py,sha256=xYpzBshysD2nmxkD5WLYqMzPYUcCRM3kYy-7n9bJL-U,4426
-fractal_server-2.9.0a2.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
-fractal_server-2.9.0a2.dist-info/METADATA,sha256=Qk7nGzAcl_hZRCJp8pdCV2PQACAWwqOzTCH7nFW__pw,4585
-fractal_server-2.9.0a2.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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