fractal-server 2.4.2__py3-none-any.whl → 2.5.0a0__py3-none-any.whl

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Files changed (30) hide show
  1. fractal_server/__init__.py +1 -1
  2. fractal_server/app/db/__init__.py +4 -1
  3. fractal_server/app/models/v1/task.py +0 -5
  4. fractal_server/app/models/v2/workflowtask.py +2 -10
  5. fractal_server/app/routes/admin/v2.py +0 -30
  6. fractal_server/app/routes/api/v2/__init__.py +0 -4
  7. fractal_server/app/routes/api/v2/_aux_functions.py +11 -46
  8. fractal_server/app/routes/api/v2/workflow.py +23 -54
  9. fractal_server/app/routes/api/v2/workflowtask.py +9 -33
  10. fractal_server/app/runner/v2/__init__.py +1 -4
  11. fractal_server/app/runner/v2/_slurm_common/get_slurm_config.py +1 -4
  12. fractal_server/app/runner/v2/handle_failed_job.py +2 -9
  13. fractal_server/app/runner/v2/runner.py +42 -70
  14. fractal_server/app/runner/v2/runner_functions.py +0 -58
  15. fractal_server/app/runner/v2/runner_functions_low_level.py +7 -21
  16. fractal_server/app/schemas/v2/__init__.py +0 -1
  17. fractal_server/app/schemas/v2/dumps.py +2 -23
  18. fractal_server/app/schemas/v2/task.py +0 -5
  19. fractal_server/app/schemas/v2/workflowtask.py +4 -29
  20. fractal_server/migrations/env.py +4 -7
  21. fractal_server/migrations/naming_convention.py +7 -0
  22. fractal_server/migrations/versions/091b01f51f88_add_usergroup_and_linkusergroup_table.py +1 -1
  23. fractal_server/migrations/versions/501961cfcd85_remove_link_between_v1_and_v2_tasks_.py +97 -0
  24. {fractal_server-2.4.2.dist-info → fractal_server-2.5.0a0.dist-info}/METADATA +1 -1
  25. {fractal_server-2.4.2.dist-info → fractal_server-2.5.0a0.dist-info}/RECORD +28 -28
  26. fractal_server/app/routes/api/v2/task_legacy.py +0 -59
  27. fractal_server/app/runner/v2/v1_compat.py +0 -31
  28. {fractal_server-2.4.2.dist-info → fractal_server-2.5.0a0.dist-info}/LICENSE +0 -0
  29. {fractal_server-2.4.2.dist-info → fractal_server-2.5.0a0.dist-info}/WHEEL +0 -0
  30. {fractal_server-2.4.2.dist-info → fractal_server-2.5.0a0.dist-info}/entry_points.txt +0 -0
fractal_server/app/runner/v2/v1_compat.py DELETED
@@ -1,31 +0,0 @@
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- from copy import deepcopy
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- from pathlib import Path
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- from typing import Any
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-
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-
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- def convert_v2_args_into_v1(
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- kwargs_v2: dict[str, Any],
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- parallelization_level: str = "image",
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- ) -> dict[str, Any]:
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- kwargs_v1 = deepcopy(kwargs_v2)
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-
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- zarr_url = kwargs_v1.pop("zarr_url")
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- input_path = Path(zarr_url).parents[3].as_posix()
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- image_component = zarr_url.replace(input_path, "").lstrip("/")
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- if parallelization_level == "image":
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- component = image_component
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- elif parallelization_level == "well":
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- component = str(Path(image_component).parent)
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- elif parallelization_level == "plate":
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- component = str(Path(image_component).parents[2])
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- else:
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- raise ValueError(f"Invalid {parallelization_level=}.")
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-
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- kwargs_v1.update(
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- input_paths=[input_path],
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- output_path=input_path,
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- metadata={},
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- component=component,
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- )
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-
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- return kwargs_v1