fractal-server 2.2.0a1__py3-none-any.whl → 2.3.0__py3-none-any.whl

{fractal_server-2.2.0a1.dist-info → fractal_server-2.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: fractal-server
-Version: 2.2.0a1
+Version: 2.3.0
 Summary: Server component of the Fractal analytics platform
 Home-page: https://github.com/fractal-analytics-platform/fractal-server
 License: BSD-3-Clause
@@ -22,16 +22,18 @@ Requires-Dist: asyncpg (>=0.29.0,<0.30.0) ; extra == "postgres"
 Requires-Dist: bcrypt (==4.0.1)
 Requires-Dist: cloudpickle (>=3.0.0,<3.1.0)
 Requires-Dist: clusterfutures (>=0.5,<0.6)
+Requires-Dist: fabric (>=3.2.2,<4.0.0)
 Requires-Dist: fastapi (>=0.110.0,<0.111.0)
 Requires-Dist: fastapi-users[oauth] (>=12.1.0,<13.0.0)
 Requires-Dist: gunicorn (>=21.2,<23.0) ; extra == "gunicorn"
 Requires-Dist: packaging (>=23.2,<24.0)
+Requires-Dist: psutil (>=5.9.8,<6.0.0)
 Requires-Dist: psycopg2 (>=2.9.5,<3.0.0) ; extra == "postgres"
 Requires-Dist: psycopg[binary] (>=3.1.0,<4.0.0) ; extra == "postgres-psycopg-binary"
 Requires-Dist: pydantic (>=1.10.8,<2)
 Requires-Dist: python-dotenv (>=1.0.0,<2.0.0)
 Requires-Dist: sqlalchemy[asyncio] (>=2.0.23,<2.1)
-Requires-Dist: sqlmodel (>=0.0.16,<0.0.17)
+Requires-Dist: sqlmodel (>=0.0.19,<0.0.20)
 Requires-Dist: uvicorn (>=0.29.0,<0.30.0)
 Project-URL: Changelog, https://github.com/fractal-analytics-platform/fractal-server/blob/main/CHANGELOG.md
 Project-URL: Documentation, https://fractal-analytics-platform.github.io/fractal-server

{fractal_server-2.2.0a1.dist-info → fractal_server-2.3.0.dist-info}/RECORD

@@ -1,4 +1,4 @@
-fractal_server/__init__.py,sha256=OybDAJMDuOmSHsn4iMvNgAcwadADya5I7nZmG0SV3VY,24
+fractal_server/__init__.py,sha256=9aa7CfEsgPy2bLJWHiqhGBk0tkmo3TRkI2Xy6lVgTUM,22
 fractal_server/__main__.py,sha256=CocbzZooX1UtGqPi55GcHGNxnrJXFg5tUU5b3wyFCyo,4958
 fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
 fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -10,7 +10,7 @@ fractal_server/app/models/v1/__init__.py,sha256=hUI7dEbPaiZGN0IbHW4RSmSicyvtn_xe
 fractal_server/app/models/v1/dataset.py,sha256=99GDgt7njx8yYQApkImqp_7bHA5HH3ElvbR6Oyj9kVI,2017
 fractal_server/app/models/v1/job.py,sha256=QLGXcWdVRHaUHQNDapYYlLpEfw4K7QyD8TmcwhrWw2o,3304
 fractal_server/app/models/v1/project.py,sha256=tf6fniyBH-sb6rBvGiqNl2wgN9ipR4hDEE3OKvxKaoo,804
-fractal_server/app/models/v1/state.py,sha256=ew7xw3iPzBwUnPlzmsOEMiPbPEMsJn_TyZ5cK93jBRQ,1095
+fractal_server/app/models/v1/state.py,sha256=m9gMZqqnm3oDpJNJp-Lht4kM7oO7pcEI7sL1g7LFvWU,1043
 fractal_server/app/models/v1/task.py,sha256=3xZqNeFYUqslh8ddMSXF2nO4nIiOD8T5Ij37wY20kss,2782
 fractal_server/app/models/v1/workflow.py,sha256=dnY5eMaOe3oZv8arn00RNX9qVkBtTLG-vYdWXcQuyo4,3950
 fractal_server/app/models/v2/__init__.py,sha256=uLzdInqATSwi0bS_V4vKB-TqFrOFaXuxCAbU73c0f24,473
@@ -23,98 +23,111 @@ fractal_server/app/models/v2/workflow.py,sha256=YBgFGCziUgU0aJ5EM3Svu9W2c46AewZO
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 fractal_server/app/routes/admin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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-fractal_server/app/routes/admin/v2.py,sha256=zqLTdxs1pU_EBkdoQL912CQUWTZJhIr-PBdAOMymgSA,13716
+fractal_server/app/routes/admin/v1.py,sha256=JfcA3oz08CCjxukjxuPeatUVb8VhvlTsTDU3N78aBz8,13967
+fractal_server/app/routes/admin/v2.py,sha256=lwTtg3lonIDQn3IcYF84x9fIKsoTVJ0FFmBx4wy2xf8,13728
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+fractal_server/app/runner/v2/_slurm_ssh/_submit_setup.py,sha256=rvhMOK1QkqsxVWUvekT62KbDDlqpw49nq9mzQXSY3H0,2883
+fractal_server/app/runner/v2/_slurm_ssh/get_slurm_config.py,sha256=ZK_yvZhe-nzMAvg54JB6TcaCBplKD9vje92m5-cTxsI,6801
 fractal_server/app/runner/v2/deduplicate_list.py,sha256=-imwO7OB7ATADEnqVbTElUwoY0YIJCTf_SbWJNN9OZg,639
 fractal_server/app/runner/v2/handle_failed_job.py,sha256=M1r3dnrbUMo_AI2qjaVuGhieMAyLh5gcvB10YOBpjvI,5415
 fractal_server/app/runner/v2/merge_outputs.py,sha256=IHuHqbKmk97K35BFvTrKVBs60z3e_--OzXTnsvmA02c,1281
 fractal_server/app/runner/v2/runner.py,sha256=uyO71VObtqLVfnFjazZH-UMpea02g8kS0DW2YoCVN2s,14278
 fractal_server/app/runner/v2/runner_functions.py,sha256=3DSzdY11g97iXjTud-6rNxF8JKxCW8GDKfUFXis58M8,11311
-fractal_server/app/runner/v2/runner_functions_low_level.py,sha256=kcmqX9gV8zBC1kiSpJJpNhWo62gH0vFPOwPbxNOwEMs,3884
+fractal_server/app/runner/v2/runner_functions_low_level.py,sha256=iwW7KqZaeupsn9tUNIvwIj_j_pommnyTxNd9sr_-OuI,3887
 fractal_server/app/runner/v2/task_interface.py,sha256=myS-kT0DsJ8xIJZBVEzgD8g54VbiwL6i7Im3e1zcVHQ,1866
 fractal_server/app/runner/v2/v1_compat.py,sha256=t0ficzAHUFaaeI56nqTb4YEKxfARF7L9Y6ijtJCwjP8,912
+fractal_server/app/runner/versions.py,sha256=dSaPRWqmFPHjg20kTCHmi_dmGNcCETflDtDLronNanU,852
 fractal_server/app/schemas/__init__.py,sha256=jiIf54owztXupv3PO6Ilh0qcrkh2RUzKq4bcEFqEfc4,40
 fractal_server/app/schemas/_validators.py,sha256=1dTOYr1IZykrxuQSV2-zuEMZbKe_nGwrfS7iUrsh-sE,3461
-fractal_server/app/schemas/state.py,sha256=t4XM04aqxeluh8MfvD7LfEc-8-dOmUVluZHhLsfxxkc,692
 fractal_server/app/schemas/user.py,sha256=rE8WgBz-ceVUs0Sz2ZwcjUrSTZTnS0ys5SBtD2XD9r8,3113
-fractal_server/app/schemas/v1/__init__.py,sha256=terWiFLKJ0QU-y3PG3hXNYdpxGTffZTlwrwJ8LfQ3FM,1809
+fractal_server/app/schemas/v1/__init__.py,sha256=CrBGgBhoemCvmZ70ZUchM-jfVAICnoa7AjZBAtL2UB0,1852
 fractal_server/app/schemas/v1/applyworkflow.py,sha256=uuIh7fHlHEL4yLqL-dePI6-nfCsqgBYATmht7w_KITw,4302
 fractal_server/app/schemas/v1/dataset.py,sha256=n71lNUO3JLy2K3IM9BZM2Fk1EnKQOTU7pm2s2rJ1FGY,3444
 fractal_server/app/schemas/v1/dumps.py,sha256=67VXnyLh_0Ufo7rPM2jZ9P9rk0CnYcVAkilx_cLX6sg,1274
 fractal_server/app/schemas/v1/manifest.py,sha256=Yht7guhs0Pcl2U0RMOCbI_UHBZ9YO_YU0H8hxACx3TY,3829
 fractal_server/app/schemas/v1/project.py,sha256=TO2TjI4m9FO-A9IB9lUCld7E4Ld0k4MacLcyA9j6Qi4,1218
+fractal_server/app/schemas/v1/state.py,sha256=GYeOE_1PtDOgu5W4t_3gw3DBHXH2aCGzINRs2dp8_h4,472
 fractal_server/app/schemas/v1/task.py,sha256=7BxOZ_qoRQ8n3YbQpDvB7VMcxB5fSYQmR5RLIWhuJ5U,3704
 fractal_server/app/schemas/v1/task_collection.py,sha256=uvq9bcMaGD_qHsh7YtcpoSAkVAbw12eY4DocIO3MKOg,3057
 fractal_server/app/schemas/v1/workflow.py,sha256=tuOs5E5Q_ozA8if7YPZ07cQjzqB_QMkBS4u92qo4Ro0,4618
-fractal_server/app/schemas/v2/__init__.py,sha256=IssDWR6q_mgNkaAxfhSnEZZLZRZIqOsr9SM7RvN1IsY,1852
+fractal_server/app/schemas/v2/__init__.py,sha256=PmpeRoPa6GGVFO99yMcJk2LLPEAecFkpUSJAS3rVQOM,2027
 fractal_server/app/schemas/v2/dataset.py,sha256=dLT52tV4dSf2HrFNak4vdQEn8PT_04IUrGnd2z-AXIU,2599
 fractal_server/app/schemas/v2/dumps.py,sha256=Qg7n0WNfqCV5DBFwfYIKP-OrBjyMZETnNZyoL-EqIco,2063
 fractal_server/app/schemas/v2/job.py,sha256=zfF9K3v4jWUJ7M482ta2CkqUJ4tVT4XfVt60p9IRhP0,3250
@@ -122,18 +135,18 @@ fractal_server/app/schemas/v2/manifest.py,sha256=N37IWohcfO3_y2l8rVM0h_1nZq7m4Iz
 fractal_server/app/schemas/v2/project.py,sha256=u7S4B-bote1oGjzAGiZ-DuQIyeRAGqJsI71Tc1EtYE0,736
 fractal_server/app/schemas/v2/status.py,sha256=SQaUpQkjFq5c5k5J4rOjNhuQaDOEg8lksPhkKmPU5VU,332
 fractal_server/app/schemas/v2/task.py,sha256=7IfxiZkaVqlARy7WYE_H8m7j_IEcuQaZORUrs6b5YuY,4672
-fractal_server/app/schemas/v2/task_collection.py,sha256=sY29NQfJrbjiidmVkVjSIH-20wIsmh7G1QOdr05KoDQ,3171
+fractal_server/app/schemas/v2/task_collection.py,sha256=8PG1bOqkfQqORMN0brWf6mHDmijt0bBW-mZsF7cSxUs,6129
 fractal_server/app/schemas/v2/workflow.py,sha256=Zzx3e-qgkH8le0FUmAx9UrV5PWd7bj14PPXUh_zgZXM,1827
 fractal_server/app/schemas/v2/workflowtask.py,sha256=atVuVN4aXsVEOmSd-vyg-8_8OnPmqx-gT75rXcn_AlQ,6552
 fractal_server/app/security/__init__.py,sha256=2-QbwuR-nsuHM_uwKS_WzYvkhnuhO5jUv8UVROetyVk,11169
-fractal_server/config.py,sha256=XiSTdx7wI2Eem-lzeMQhhGAwUwsACCKdUnbiGqDIChY,17219
+fractal_server/config.py,sha256=SCKJrGQeKkWxyz-kT7sCjcxwKwidR1bT0hi0KEj0sV0,24282
 fractal_server/data_migrations/README.md,sha256=_3AEFvDg9YkybDqCLlFPdDmGJvr6Tw7HRI14aZ3LOIw,398
 fractal_server/gunicorn_fractal.py,sha256=2AOkgxu-oQ-XB578_voT0VuhmAXFTmb0c-nYn1XLy_Q,1231
 fractal_server/images/__init__.py,sha256=xO6jTLE4EZKO6cTDdJsBmK9cdeh9hFTaSbSuWgQg7y4,196
 fractal_server/images/models.py,sha256=9ipU5h4N6ogBChoB-2vHoqtL0TXOHCv6kRR-fER3mkM,4167
 fractal_server/images/tools.py,sha256=gxeniYy4Z-cp_ToK2LHPJUTVVUUrdpogYdcBUvBuLiY,2209
 fractal_server/logger.py,sha256=56wfka6fHaa3Rx5qO009nEs_y8gx5wZ2NUNZZ1I-uvc,5130
-fractal_server/main.py,sha256=U50BfL1cxpkSMglRmEHILZE1yDpiUhyb4tlrNuE3j6s,4417
+fractal_server/main.py,sha256=CTWA_EJBaSO7hty6AdAenFQjbNE4Chr1U-sZ2qsPDmw,5289
 fractal_server/migrations/README,sha256=4rQvyDfqodGhpJw74VYijRmgFP49ji5chyEemWGHsuw,59
 fractal_server/migrations/env.py,sha256=Bvg-FJzRJZIH_wqS_ZyZNXANIaathjo22_IY7c3fCjo,2636
 fractal_server/migrations/script.py.mako,sha256=oMXw9LC3zRbinWWPPDgeZ4z9FJrV2zhRWiYdS5YgNbI,526
@@ -154,22 +167,33 @@ fractal_server/migrations/versions/e75cac726012_make_applyworkflow_start_timesta
 fractal_server/migrations/versions/efa89c30e0a4_add_project_timestamp_created.py,sha256=jilQW3QIqYQ4Q6hCnUiG7UtNMpA41ujqrB3tPFiPM1Q,1221
 fractal_server/migrations/versions/f384e1c0cf5d_drop_task_default_args_columns.py,sha256=9BwqUS9Gf7UW_KjrzHbtViC880qhD452KAytkHWWZyk,746
 fractal_server/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+fractal_server/ssh/__init__.py,sha256=sVUmzxf7_DuXG1xoLQ1_00fo5NPhi2LJipSmU5EAkPs,124
+fractal_server/ssh/_fabric.py,sha256=-nQ87eIjmLBIqyvdcYskYN25148BUhkjr2sgZEUfwVA,7084
 fractal_server/syringe.py,sha256=3qSMW3YaMKKnLdgnooAINOPxnCOxP7y2jeAQYB21Gdo,2786
 fractal_server/tasks/__init__.py,sha256=kadmVUoIghl8s190_Tt-8f-WBqMi8u8oU4Pvw39NHE8,23
-fractal_server/tasks/endpoint_operations.py,sha256=D1WSJd8dIfIumKezon1NYX5a0QNPqqlbj9uRq-ur9CQ,5379
-fractal_server/tasks/utils.py,sha256=R1_SKfXTwveT7CJJOrvkwi0vNpr9MBIiNh7qv8EK3Wc,3278
+fractal_server/tasks/utils.py,sha256=SMHYnCoJ78Du3SECC9ciqPjgTT_DSe8LnM1JE_9H0eA,1915
 fractal_server/tasks/v1/_TaskCollectPip.py,sha256=16Gn8lVYHBuwNLBHdcdx0X8s9QXXsbfPwSzcCcM6fRg,3775
 fractal_server/tasks/v1/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-fractal_server/tasks/v1/background_operations.py,sha256=I-D4SaG56UMkoH7dNy5CzbEsAjySCPc7gQc-U14phKk,11731
+fractal_server/tasks/v1/background_operations.py,sha256=PP9zSezqK-AqTor2UfxjyX_CSoSq4c1unBxi1fu2EVQ,11736
+fractal_server/tasks/v1/endpoint_operations.py,sha256=YyMU1Y3Xt7D9WOKqaMLuwEoIaAqQP2Klz3I-ypAgOLI,5077
 fractal_server/tasks/v1/get_collection_data.py,sha256=bi9tuApLgoKZNMIG1kR4GoKI9S6Y040gFfNQapw4ikM,502
-fractal_server/tasks/v2/_TaskCollectPip.py,sha256=QeCqXDgOnMjk3diVlC5bgGEywyQjYFm5637Rke49vJY,3775
+fractal_server/tasks/v1/utils.py,sha256=J9oKys-82OehBxOon5wWl3CxjVBgYWeVEEyWGVFnreI,1759
+fractal_server/tasks/v2/_TaskCollectPip.py,sha256=kWQNMNZ8OEddkYhmhsk3E6ArcaD7qe4vsjYYx9vbrUg,4900
 fractal_server/tasks/v2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-fractal_server/tasks/v2/background_operations.py,sha256=MAMBn6W2bhkdK59kfUGiD7a1G163exiYeJqqtj08Gv4,12922
-fractal_server/tasks/v2/get_collection_data.py,sha256=Qhf2T_aaqAfqu9_KpUSlXsS7EJoZQbEPEreHHa2jco8,502
+fractal_server/tasks/v2/_venv_pip.py,sha256=xm4XClWYbhXQRqDxYxM9cP7ZCnx-8b078fuVUL12D2M,6286
+fractal_server/tasks/v2/background_operations.py,sha256=dfKH467G0tln9EKiDRzN2WW_eD1SvT3PJrMu4FyTCBs,11497
+fractal_server/tasks/v2/background_operations_ssh.py,sha256=n4aTtUvx73eJS567LOPkXoCdMPeBjJ5BbiAdmzO-ykc,12488
+fractal_server/tasks/v2/endpoint_operations.py,sha256=gT38pl5TEH6WNWOtg4Itegt2lTJJI6YRa7fEj9Y4x2s,4226
+fractal_server/tasks/v2/templates/_1_create_venv.sh,sha256=_Lr1UCWQycqea07YZFICxiwQVz9YZHYS-AaVFjNLUyQ,993
+fractal_server/tasks/v2/templates/_2_upgrade_pip.sh,sha256=45CPrRxxNBq1ujDA8m1_LWt6QaN1G29mda_LbW2EjN8,626
+fractal_server/tasks/v2/templates/_3_pip_install.sh,sha256=ViAf3KKtk8YnEkrhybPV8ZZdmZJ0g2l4zkoVnmXbAKw,664
+fractal_server/tasks/v2/templates/_4_pip_freeze.sh,sha256=SHndmLn5daT_lg6rnhNPMrRiPAIbGUlMUBIDDLniVOg,372
+fractal_server/tasks/v2/templates/_5_pip_show.sh,sha256=3onbKZ0PJkkYronP4_tdMBoAe3GqxVQFH-L4dUqSkQY,1825
+fractal_server/tasks/v2/utils.py,sha256=JOyCacb6MNvrwfLNTyLwcz8y79J29YuJeJ2MK5kqXRM,1657
 fractal_server/urls.py,sha256=5o_qq7PzKKbwq12NHSQZDmDitn5RAOeQ4xufu-2v9Zk,448
 fractal_server/utils.py,sha256=b7WwFdcFZ8unyT65mloFToYuEDXpQoHRcmRNqrhd_dQ,2115
-fractal_server-2.2.0a1.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
-fractal_server-2.2.0a1.dist-info/METADATA,sha256=_EjXCIJCW7vFuEVg66y-Px3GUfi-ynAEPuNVJwg2dZo,4349
-fractal_server-2.2.0a1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-fractal_server-2.2.0a1.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
-fractal_server-2.2.0a1.dist-info/RECORD,,
+fractal_server-2.3.0.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
+fractal_server-2.3.0.dist-info/METADATA,sha256=DtVjYFpqcCqJ-LqWSAxES8asIJjEnd7NSBINPYOxHNE,4425
+fractal_server-2.3.0.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+fractal_server-2.3.0.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
+fractal_server-2.3.0.dist-info/RECORD,,

fractal_server/tasks/v2/get_collection_data.py

@@ -1,14 +0,0 @@
-import json
-from pathlib import Path
-
-from fractal_server.app.schemas.v2 import TaskCollectStatusV2
-from fractal_server.tasks.utils import get_absolute_venv_path
-from fractal_server.tasks.utils import get_collection_path
-
-
-def get_collection_data(venv_path: Path) -> TaskCollectStatusV2:
-    package_path = get_absolute_venv_path(venv_path)
-    collection_path = get_collection_path(package_path)
-    with collection_path.open() as f:
-        data = json.load(f)
-    return TaskCollectStatusV2(**data)