fractal-server 2.18.1__py3-none-any.whl → 2.18.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- fractal_server/__init__.py +1 -1
- fractal_server/app/models/v2/task_group.py +0 -2
- fractal_server/app/routes/api/v2/_aux_functions_history.py +13 -5
- fractal_server/app/routes/api/v2/history.py +4 -2
- fractal_server/app/routes/api/v2/job.py +12 -5
- fractal_server/app/schemas/v2/task_group.py +0 -3
- fractal_server/migrations/versions/068496367952_drop_taskgroup_venv_size_and_files_.py +48 -0
- fractal_server/tasks/v2/local/collect.py +2 -19
- fractal_server/tasks/v2/local/collect_pixi.py +2 -12
- fractal_server/tasks/v2/local/reactivate.py +1 -1
- fractal_server/tasks/v2/ssh/collect.py +2 -19
- fractal_server/tasks/v2/ssh/collect_pixi.py +2 -12
- fractal_server/tasks/v2/ssh/reactivate.py +1 -1
- fractal_server/tasks/v2/templates/pixi_3_post_install.sh +0 -6
- fractal_server/tasks/v2/utils_pixi.py +0 -4
- {fractal_server-2.18.1.dist-info → fractal_server-2.18.2.dist-info}/METADATA +1 -1
- {fractal_server-2.18.1.dist-info → fractal_server-2.18.2.dist-info}/RECORD +21 -21
- fractal_server/tasks/v2/templates/5_get_venv_size_and_file_number.sh +0 -12
- /fractal_server/tasks/v2/templates/{6_pip_install_from_freeze.sh → 5_pip_install_from_freeze.sh} +0 -0
- {fractal_server-2.18.1.dist-info → fractal_server-2.18.2.dist-info}/WHEEL +0 -0
- {fractal_server-2.18.1.dist-info → fractal_server-2.18.2.dist-info}/entry_points.txt +0 -0
- {fractal_server-2.18.1.dist-info → fractal_server-2.18.2.dist-info}/licenses/LICENSE +0 -0
fractal_server/__init__.py
CHANGED
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@@ -1 +1 @@
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1
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-
__VERSION__ = "2.18.
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1
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+
__VERSION__ = "2.18.2"
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@@ -19,6 +19,7 @@ from fractal_server.app.routes.api.v2._aux_functions import _get_workflow_or_404
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from fractal_server.app.routes.api.v2._aux_functions import (
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_get_workflowtask_or_404,
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)
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from fractal_server.app.schemas.v2.job import JobStatusType
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from fractal_server.app.schemas.v2.sharing import ProjectPermissions
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from fractal_server.logger import set_logger
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from fractal_server.zip_tools import _read_single_file_from_zip
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@@ -70,6 +71,7 @@ def read_log_file(
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dataset_id: int,
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logfile: str,
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job_working_dir: str,
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job_status: JobStatusType,
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) -> str:
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"""
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Returns the contents of a Job's log file, either directly from the working
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return _read_single_file_from_zip(
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file_path=relative_logfile, archive_path=archive_path
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)
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else:
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match job_status:
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case JobStatusType.SUBMITTED:
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logger.info(
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f"Neither {logfile=} nor {archive_path=} exist "
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"(for submitted job)."
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)
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case _:
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logger.warning(
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f"Error while retrieving logs for {logfile=} and "
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f"{archive_path=}."
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)
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return (
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f"Logs for task '{task_name}' in dataset "
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f"{dataset_id} are not available."
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@@ -458,11 +458,11 @@ async def get_image_log(
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# Get job.working_dir
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res = await db.execute(
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select(JobV2.working_dir)
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select(JobV2.working_dir, JobV2.status)
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.join(HistoryRun, HistoryRun.job_id == JobV2.id)
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.where(HistoryRun.id == history_unit.history_run_id)
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)
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job_working_dir = res.
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job_working_dir, job_status = res.one()
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# Get log or placeholder text
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log = read_log_file(
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task_name=wftask.task.name,
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dataset_id=request_data.dataset_id,
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job_working_dir=job_working_dir,
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job_status=job_status,
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)
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return JSONResponse(content=log)
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task_name=wftask.task.name,
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dataset_id=dataset_id,
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job_working_dir=job.working_dir,
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job_status=job.status,
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)
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return JSONResponse(content=log)
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LinkUserProjectV2, LinkUserProjectV2.project_id == JobV2.project_id
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)
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.where(LinkUserProjectV2.user_id == user.id)
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.where(LinkUserProjectV2.
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.where(LinkUserProjectV2.is_verified.is_(True))
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.order_by(JobV2.start_timestamp.desc())
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)
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res = await db.execute(stm)
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job_list = res.scalars().all()
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required_permissions=ProjectPermissions.READ,
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db=db,
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)
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res = await db.execute(
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select(JobV2)
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.where(JobV2.workflow_id == workflow_id)
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.order_by(JobV2.start_timestamp.desc())
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)
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job_list = res.scalars().all()
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return job_list
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db=db,
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)
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res = await db.execute(
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select(JobV2)
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.where(JobV2.project_id == project.id)
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.order_by(JobV2.start_timestamp.desc())
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)
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job_list = res.scalars().all()
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await db.close()
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if not log:
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pinned_package_versions_pre: dict[str, str] = Field(default_factory=dict)
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pinned_package_versions_post: dict[str, str] = Field(default_factory=dict)
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venv_size_in_kB: int | None = None
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venv_file_number: int | None = None
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active: bool
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timestamp_created: AwareDatetime
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timestamp_last_used: AwareDatetime
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@@ -0,0 +1,48 @@
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"""Drop TaskGroup venv size and files number
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Revision ID: 068496367952
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Revises: b7477cc98f45
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Create Date: 2025-12-10 15:24:47.720796
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"""
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import sqlalchemy as sa
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from alembic import op
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# revision identifiers, used by Alembic.
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revision = "068496367952"
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down_revision = "b7477cc98f45"
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branch_labels = None
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depends_on = None
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def upgrade() -> None:
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# ### commands auto generated by Alembic - please adjust! ###
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with op.batch_alter_table("taskgroupv2", schema=None) as batch_op:
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batch_op.drop_column("venv_size_in_kB")
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batch_op.drop_column("venv_file_number")
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# ### end Alembic commands ###
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def downgrade() -> None:
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# ### commands auto generated by Alembic - please adjust! ###
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with op.batch_alter_table("taskgroupv2", schema=None) as batch_op:
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batch_op.add_column(
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sa.Column(
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"venv_file_number",
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sa.INTEGER(),
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autoincrement=False,
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nullable=True,
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)
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)
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batch_op.add_column(
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sa.Column(
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"venv_size_in_kB",
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sa.INTEGER(),
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autoincrement=False,
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nullable=True,
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)
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)
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# ### end Alembic commands ###
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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# Run script 5
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venv_info = _customize_and_run_template(
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template_filename="5_get_venv_size_and_file_number.sh",
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**common_args,
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)
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venv_size, venv_file_number = venv_info.split()
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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pkg_attrs = parse_script_pip_show_stdout(stdout)
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for key, value in pkg_attrs.items():
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logger.debug(f"Parsed from pip-show: {key}={value}")
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logger.info("create_db_tasks_and_update_task_group - end")
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# Update task_group data
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logger.info(
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"Add env_info, venv_size and venv_file_number "
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"to TaskGroupV2 - start"
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)
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logger.info("Add env_info to TaskGroupV2 - start")
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task_group.env_info = pip_freeze_stdout
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task_group.venv_size_in_kB = int(venv_size)
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task_group.venv_file_number = int(venv_file_number)
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task_group = add_commit_refresh(obj=task_group, db=db)
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logger.info(
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"to TaskGroupV2 - end"
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)
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logger.info("Add env_info to TaskGroupV2 - end")
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# Finalize (write metadata to DB)
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logger.info("finalising - START")
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# Parse stdout
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parsed_output = parse_collect_stdout(stdout)
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package_root = parsed_output["package_root"]
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venv_size = parsed_output["venv_size"]
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venv_file_number = parsed_output["venv_file_number"]
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project_python_wrapper = parsed_output["project_python_wrapper"]
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# Make task folder 755
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)
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logger.info("Add env_info to TaskGroupV2 - start")
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with Path(source_dir, "pixi.lock").open() as f:
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pixi_lock_contents = f.read()
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# NOTE: see issue 2626 about whether to keep `pixi.lock` files
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# in the database
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task_group.env_info = pixi_lock_contents
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task_group.venv_size_in_kB = int(venv_size)
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task_group.venv_file_number = int(venv_file_number)
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task_group = add_commit_refresh(obj=task_group, db=db)
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logger.info(
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logger.info("Add env_info to TaskGroupV2 - end")
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# Finalize (write metadata to DB)
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logger.info("finalising - START")
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logger.debug("start - install from pip freeze")
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template_filename="
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template_filename="5_pip_install_from_freeze.sh",
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**common_args,
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logger.debug("end - install from pip freeze")
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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# Run script 5
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venv_info = _customize_and_run_template(
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template_filename="5_get_venv_size_and_file_number.sh",
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**common_args,
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)
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venv_size, venv_file_number = venv_info.split()
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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pkg_attrs = parse_script_pip_show_stdout(stdout)
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for key, value in pkg_attrs.items():
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logger.info("create_db_tasks_and_update_task_group - end")
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# Update task_group data
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logger.info(
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)
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logger.info("Add env_info to TaskGroupV2 - start")
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task_group.env_info = pip_freeze_stdout
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task_group.venv_size_in_kB = int(venv_size)
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task_group.venv_file_number = int(venv_file_number)
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task_group = add_commit_refresh(obj=task_group, db=db)
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logger.info(
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logger.info("Add env_info to TaskGroupV2 - end")
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# Finalize (write metadata to DB)
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logger.info("finalising - START")
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@@ -266,8 +266,6 @@ def collect_ssh_pixi(
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fractal_server/tasks/v2/utils_package_names.py,sha256=-FAcbwBHsjyvhIK0QKue9_0xJUfRVdKMSIU_-gnLOR0,2381
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260
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-
fractal_server/tasks/v2/utils_pixi.py,sha256=
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260
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+
fractal_server/tasks/v2/utils_pixi.py,sha256=w0ll5LndB0RTiZEpWokHtgKY6_dE4FKauL173_T_AZA,3278
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261
261
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fractal_server/tasks/v2/utils_python_interpreter.py,sha256=36AvrMoydr9w6Rm_7hKl5QK8zYI0KIm4Pv8WHANWwjE,658
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262
262
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fractal_server/tasks/v2/utils_templates.py,sha256=L5GblhIKJwyzUbCORj1et5mh-7mG19nT5kmIpxOEj90,3489
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263
263
|
fractal_server/types/__init__.py,sha256=ENzSmiU4niKK0CLWN0AfdzsbRsTCrUMcFeANRvNZ5aU,3721
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@@ -268,8 +268,8 @@ fractal_server/types/validators/_workflow_task_arguments_validators.py,sha256=zt
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268
268
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fractal_server/urls.py,sha256=QjIKAC1a46bCdiPMu3AlpgFbcv6a4l3ABcd5xz190Og,471
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269
269
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fractal_server/utils.py,sha256=-rjg8QTXQcKweXjn0NcmETFs1_uM9PGnbl0Q7c4ERPM,2181
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270
270
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fractal_server/zip_tools.py,sha256=Uhn-ax4_9g1PJ32BdyaX30hFpAeVOv2tZYTUK-zVn1E,5719
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271
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-
fractal_server-2.18.
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272
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-
fractal_server-2.18.
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273
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-
fractal_server-2.18.
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274
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-
fractal_server-2.18.
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275
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-
fractal_server-2.18.
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271
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+
fractal_server-2.18.2.dist-info/METADATA,sha256=3N5kI9DAFqLXBpWAwI_OmNluYRiksN-dD3PFYB4NPe4,4275
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|
272
|
+
fractal_server-2.18.2.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
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273
|
+
fractal_server-2.18.2.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
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274
|
+
fractal_server-2.18.2.dist-info/licenses/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
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275
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+
fractal_server-2.18.2.dist-info/RECORD,,
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@@ -1,12 +0,0 @@
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1
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-
#!/bin/bash
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2
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-
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3
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-
set -e
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4
|
-
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5
|
-
# Variables to be filled within fractal-server
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6
|
-
PACKAGE_ENV_DIR=__PACKAGE_ENV_DIR__
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7
|
-
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8
|
-
# Find memory usage and file number
|
|
9
|
-
ENV_DISK_USAGE=$(du -sk "${PACKAGE_ENV_DIR}" | cut -f1)
|
|
10
|
-
ENV_FILE_NUMBER=$(find "${PACKAGE_ENV_DIR}" -type f | wc -l)
|
|
11
|
-
|
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12
|
-
echo "$ENV_DISK_USAGE" "$ENV_FILE_NUMBER"
|
/fractal_server/tasks/v2/templates/{6_pip_install_from_freeze.sh → 5_pip_install_from_freeze.sh}
RENAMED
|
File without changes
|
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File without changes
|
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File without changes
|
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File without changes
|