fractal-server 2.16.2a0__py3-none-any.whl → 2.16.4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- fractal_server/__init__.py +1 -1
- fractal_server/app/routes/admin/v2/job.py +3 -3
- fractal_server/app/routes/admin/v2/task.py +1 -1
- fractal_server/app/routes/admin/v2/task_group.py +1 -1
- fractal_server/app/routes/admin/v2/task_group_lifecycle.py +3 -3
- fractal_server/app/routes/api/v2/_aux_functions.py +7 -7
- fractal_server/app/routes/api/v2/_aux_functions_history.py +2 -2
- fractal_server/app/routes/api/v2/_aux_functions_task_lifecycle.py +37 -13
- fractal_server/app/routes/api/v2/_aux_functions_tasks.py +8 -8
- fractal_server/app/routes/api/v2/dataset.py +4 -4
- fractal_server/app/routes/api/v2/history.py +2 -2
- fractal_server/app/routes/api/v2/images.py +3 -3
- fractal_server/app/routes/api/v2/job.py +1 -1
- fractal_server/app/routes/api/v2/project.py +1 -1
- fractal_server/app/routes/api/v2/status_legacy.py +1 -1
- fractal_server/app/routes/api/v2/submit.py +9 -9
- fractal_server/app/routes/api/v2/task.py +4 -4
- fractal_server/app/routes/api/v2/task_collection.py +5 -5
- fractal_server/app/routes/api/v2/task_collection_custom.py +6 -6
- fractal_server/app/routes/api/v2/task_collection_pixi.py +5 -5
- fractal_server/app/routes/api/v2/task_group_lifecycle.py +3 -3
- fractal_server/app/routes/api/v2/task_version_update.py +3 -3
- fractal_server/app/routes/api/v2/workflow.py +4 -4
- fractal_server/app/routes/api/v2/workflow_import.py +1 -1
- fractal_server/app/routes/api/v2/workflowtask.py +6 -6
- fractal_server/app/routes/auth/group.py +2 -2
- fractal_server/app/routes/auth/users.py +1 -1
- fractal_server/app/routes/aux/_job.py +1 -1
- fractal_server/app/routes/aux/_runner.py +2 -2
- fractal_server/app/routes/aux/validate_user_settings.py +2 -2
- fractal_server/config.py +2 -2
- fractal_server/main.py +1 -1
- fractal_server/{app/runner → runner}/executors/base_runner.py +1 -1
- fractal_server/{app/runner → runner}/executors/call_command_wrapper.py +1 -1
- fractal_server/{app/runner → runner}/executors/local/runner.py +9 -9
- fractal_server/{app/runner → runner}/executors/slurm_common/_slurm_config.py +1 -1
- fractal_server/{app/runner → runner}/executors/slurm_common/base_slurm_runner.py +13 -13
- fractal_server/{app/runner → runner}/executors/slurm_common/slurm_job_task_models.py +1 -1
- fractal_server/{app/runner → runner}/executors/slurm_sudo/runner.py +1 -1
- fractal_server/{app/runner → runner}/task_files.py +1 -1
- fractal_server/{app/runner → runner}/v2/_local.py +2 -2
- fractal_server/{app/runner → runner}/v2/_slurm_ssh.py +3 -3
- fractal_server/{app/runner → runner}/v2/_slurm_sudo.py +2 -2
- fractal_server/{app/runner → runner}/v2/deduplicate_list.py +2 -2
- fractal_server/{app/runner → runner}/v2/merge_outputs.py +2 -2
- fractal_server/{app/runner → runner}/v2/runner.py +3 -3
- fractal_server/{app/runner → runner}/v2/runner_functions.py +12 -12
- fractal_server/{app/runner → runner}/v2/submit_workflow.py +13 -13
- fractal_server/{app/runner → runner}/v2/task_interface.py +2 -2
- fractal_server/ssh/_fabric.py +61 -18
- fractal_server/tasks/v2/ssh/_pixi_slurm_ssh.py +173 -33
- fractal_server/tasks/v2/ssh/collect_pixi.py +20 -15
- fractal_server/tasks/v2/ssh/reactivate_pixi.py +20 -15
- fractal_server/tasks/v2/utils_background.py +1 -1
- {fractal_server-2.16.2a0.dist-info → fractal_server-2.16.4.dist-info}/METADATA +6 -6
- {fractal_server-2.16.2a0.dist-info → fractal_server-2.16.4.dist-info}/RECORD +82 -82
- /fractal_server/{app/runner → runner}/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/components.py +0 -0
- /fractal_server/{app/runner → runner}/exceptions.py +0 -0
- /fractal_server/{app/runner → runner}/executors/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/executors/local/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/executors/local/get_local_config.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_common/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_common/_batching.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_common/_job_states.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_common/get_slurm_config.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_common/remote.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_ssh/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_ssh/run_subprocess.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_ssh/runner.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_ssh/tar_commands.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_sudo/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/executors/slurm_sudo/_subprocess_run_as_user.py +0 -0
- /fractal_server/{app/runner → runner}/filenames.py +0 -0
- /fractal_server/{app/runner → runner}/set_start_and_last_task_index.py +0 -0
- /fractal_server/{app/runner → runner}/shutdown.py +0 -0
- /fractal_server/{app/runner → runner}/v2/__init__.py +0 -0
- /fractal_server/{app/runner → runner}/v2/db_tools.py +0 -0
- /fractal_server/{app/runner → runner}/versions.py +0 -0
- {fractal_server-2.16.2a0.dist-info → fractal_server-2.16.4.dist-info}/LICENSE +0 -0
- {fractal_server-2.16.2a0.dist-info → fractal_server-2.16.4.dist-info}/WHEEL +0 -0
- {fractal_server-2.16.2a0.dist-info → fractal_server-2.16.4.dist-info}/entry_points.txt +0 -0
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@@ -188,12 +188,21 @@ def reactivate_ssh_pixi(
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remote=pixi_lock_remote,
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)
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#
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# Prepare scripts 2 and 3
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remote_script2_path = _customize_and_send_template(
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template_filename="pixi_2_install.sh",
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replacements=replacements,
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**common_args,
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)
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remote_script3_path = _customize_and_send_template(
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template_filename="pixi_3_post_install.sh",
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replacements=replacements,
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**common_args,
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)
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logger.debug(
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"Post-installation script written to "
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f"{remote_script3_path=}."
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)
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logger.debug(
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"Installation script written to "
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f"{remote_script2_path=}."
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@@ -201,28 +210,24 @@ def reactivate_ssh_pixi(
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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# Run scripts 2 and 3
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stdout = run_script_on_remote_slurm(
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script_paths=[
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remote_script2_path,
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remote_script3_path,
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f"chmod -R 755 {source_dir}",
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],
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slurm_config=settings.pixi.SLURM_CONFIG,
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fractal_ssh=fractal_ssh,
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logger_name=LOGGER_NAME,
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prefix=common_args["prefix"],
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db=db,
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activity=activity,
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log_file_path=log_file_path,
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)
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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# Run script 3 - post-install
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stdout = _customize_and_run_template(
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template_filename="pixi_3_post_install.sh",
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replacements=replacements,
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**common_args,
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)
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logger.debug(f"STDOUT: {stdout}")
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activity.log = get_current_log(log_file_path)
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activity = add_commit_refresh(obj=activity, db=db)
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fractal_ssh.run_command(cmd=f"chmod -R 755 {source_dir}")
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-
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# Finalize (write metadata to DB)
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activity.status = TaskGroupActivityStatusV2.OK
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activity.timestamp_ended = get_timestamp()
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.3
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Name: fractal-server
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Version: 2.16.
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Version: 2.16.4
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Summary: Backend component of the Fractal analytics platform
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License: BSD-3-Clause
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Author: Tommaso Comparin
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Requires-Dist: alembic (>=1.13.1,<2.0.0)
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Requires-Dist: cryptography (>=
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Requires-Dist: cryptography (>=46.0.0,<47.0.0)
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Requires-Dist: fabric (>=3.2.2,<3.3.0)
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Requires-Dist: fastapi (>=0.
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Requires-Dist: fastapi (>=0.117.0,<0.118.0)
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Requires-Dist: fastapi-users[oauth] (>=14,<15)
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Requires-Dist: gunicorn (>=23.0,<24.0)
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Requires-Dist: packaging (>=25.0.0,<26.0.0)
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Requires-Dist: pydantic-settings (>=2.7.0)
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Requires-Dist: python-dotenv (>=1.1.0,<1.2.0)
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Requires-Dist: sqlalchemy[asyncio] (>=2.0.23,<2.1)
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Requires-Dist: sqlmodel (==0.0.
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Requires-Dist: sqlmodel (==0.0.25)
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Requires-Dist: tomli_w (>=1.2.0,<1.3.0)
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Requires-Dist: uvicorn (>=0.29.0
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Requires-Dist: uvicorn (>=0.29.0,<=0.36.0)
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Requires-Dist: uvicorn-worker (==0.4.0)
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Project-URL: Documentation, https://fractal-analytics-platform.github.io/fractal-server
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Project-URL: Homepage, https://github.com/fractal-analytics-platform/fractal-server
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Project-URL: Repository, https://github.com/fractal-analytics-platform/fractal-server
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fractal_server/__init__.py,sha256=
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fractal_server/__init__.py,sha256=hzEtGqjSxkQCDj9NRiYHKGmtRO8rLUxBSklUYRYJdpE,23
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fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
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fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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fractal_server/app/routes/admin/v2/__init__.py,sha256=_5lqb6-M8-fZqE1HRMep6pAFYRUKMxrvbZOKs-RXWkw,933
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fractal_server/app/routes/admin/v2/accounting.py,sha256=-eLzBirENvdhjhrCf6bs1pTriIui19DAr_k-zuJB7Y8,3593
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fractal_server/app/routes/admin/v2/impersonate.py,sha256=gc4lshfEPFR6W2asH7aKu6hqE6chzusdhAUVV9p51eU,1131
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fractal_server/app/routes/admin/v2/job.py,sha256=
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fractal_server/app/routes/admin/v2/job.py,sha256=6NG93I-yQTlJZ1AIhMPwuizQcQvFlvI7kGJ8jG94Igg,8595
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fractal_server/app/routes/admin/v2/project.py,sha256=MA_LdoEuSuisSGRO43TapMuJ080y5iaUGSAUgKuuKOg,1188
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fractal_server/app/routes/admin/v2/task.py,sha256=e1UxsA6CWeYqvnHqxySE78ckRuE0EK60X02VMnkG2gg,4309
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fractal_server/app/routes/admin/v2/task_group.py,sha256=7-Axk5SG6Nw02p7pc6Q6_EtO9Ncy74pVXvt2GCG-Iuc,6043
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fractal_server/app/routes/admin/v2/task_group_lifecycle.py,sha256=frIW3aNQxK_xLRTCfet7249fxi3WF7uNjv6ApGrverY,11594
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fractal_server/app/routes/api/__init__.py,sha256=B8l6PSAhR10iZqHEiyTat-_0tkeKdrCigIE6DJGP5b8,638
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fractal_server/app/routes/api/v2/_aux_functions.py,sha256=nPmSHRlFoTGDoP95J2KHnhtzxH5Ry2_h2fo9QHugo9c,14266
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fractal_server/app/routes/api/v2/_aux_functions_history.py,sha256=TOdUJNsHaAzG0FP0sCylyBUPtz5ml_68fEW4kR-cmkg,4441
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fractal_server/app/routes/api/v2/_aux_functions_task_lifecycle.py,sha256=bguVrV_8cleRGqmMBhaGlTZ2iKtwGrVSzN-6dDDf05g,8600
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fractal_server/app/routes/api/v2/_aux_functions_task_version_update.py,sha256=PKjV7r8YsPRXoNiVSnOK4KBYVV3l_Yb_ZPrqAkMkXrQ,1182
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fractal_server/app/routes/api/v2/_aux_functions_tasks.py,sha256=QlFrW2RGoYU-cllyOu2H_5ZAjA6neIa8pWZnq7g1UNc,12503
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fractal_server/app/routes/api/v2/_aux_task_group_disambiguation.py,sha256=8x1_q9FyCzItnPmdSdLQuwUTy4B9xCsXscp97_lJcpM,4635
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fractal_server/app/routes/api/v2/dataset.py,sha256=7hSqqE3sFjQjJOZf_QvYbMersjXXbS3YM3a1WDgv1rM,8893
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fractal_server/app/routes/api/v2/history.py,sha256=kEhD-TKkORenUUsfyODNBi1jOsGc82h_EWbRKyRkD5k,17102
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fractal_server/app/routes/api/v2/images.py,sha256=foA5ZNjMzZWlcYMgYuGSZsm1I-po-8NSYBIMz4ZbkPc,7867
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fractal_server/app/routes/api/v2/job.py,sha256=FyK4Aa9XoIcfD0ZpKM-4Bkj3ZcIc93UzDc8jF85uHps,6478
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fractal_server/app/routes/api/v2/pre_submission_checks.py,sha256=AEN6w2X5kCkSpZydudvuTPhl_VZUQ4zUav6D3NiF6r8,4935
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fractal_server/app/routes/api/v2/project.py,sha256=j7SHe38IKMYBW5dTDUgnWn0alxDUeCFL1eJmgoCxvcc,4568
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fractal_server/app/routes/api/v2/status_legacy.py,sha256=GG-AUdAngFL1QpE8Alo3xPxyKC4csG7DbomYlIfqTEs,6318
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fractal_server/app/routes/api/v2/submit.py,sha256=xcoAiLTtns9yGQmobVyqT8GkvwFN_VEn5sSvvSJ9SZ4,9171
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