fractal-server 2.15.3__py3-none-any.whl → 2.15.4__py3-none-any.whl

fractal_server/__init__.py

@@ -1 +1 @@
-__VERSION__ = "2.15.3"
+__VERSION__ = "2.15.4"

fractal_server/app/models/v2/project.py

@@ -12,7 +12,6 @@ from fractal_server.utils import get_timestamp
 
 
 class ProjectV2(SQLModel, table=True):
-
     id: int | None = Field(default=None, primary_key=True)
     name: str
     timestamp_created: datetime = Field(

fractal_server/app/models/v2/task_group.py

@@ -107,7 +107,6 @@ class TaskGroupV2(SQLModel, table=True):
 
 
 class TaskGroupActivityV2(SQLModel, table=True):
-
     id: int | None = Field(default=None, primary_key=True)
     user_id: int = Field(foreign_key="user_oauth.id")
     taskgroupv2_id: int | None = Field(

fractal_server/app/models/v2/workflow.py

@@ -12,7 +12,6 @@ from .workflowtask import WorkflowTaskV2
 
 
 class WorkflowV2(SQLModel, table=True):
-
     id: int | None = Field(default=None, primary_key=True)
     name: str
     project_id: int = Field(foreign_key="projectv2.id", ondelete="CASCADE")

fractal_server/app/routes/admin/v2/accounting.py

@@ -82,7 +82,6 @@ async def query_accounting_slurm(
     superuser: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> JSONResponse:
-
     stm = select(AccountingRecordSlurm.slurm_job_ids)
     if query.user_id is not None:
         stm = stm.where(AccountingRecordSlurm.user_id == query.user_id)

fractal_server/app/routes/admin/v2/job.py

@@ -111,7 +111,6 @@ async def view_single_job(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> JobReadV2:
-
     job = await db.get(JobV2, job_id)
     if not job:
         raise HTTPException(

fractal_server/app/routes/admin/v2/task.py

@@ -20,7 +20,6 @@ router = APIRouter()
 
 
 class TaskV2Minimal(BaseModel):
-
     id: int
     name: str
     type: str
@@ -32,13 +31,11 @@ class TaskV2Minimal(BaseModel):
 
 
 class ProjectUser(BaseModel):
-
     id: int
     email: EmailStr
 
 
 class TaskV2Relationship(BaseModel):
-
     workflow_id: int
     workflow_name: str
     project_id: int
@@ -47,7 +44,6 @@ class TaskV2Relationship(BaseModel):
 
 
 class TaskV2Info(BaseModel):
-
     task: TaskV2Minimal
     relationships: list[TaskV2Relationship]
 

fractal_server/app/routes/admin/v2/task_group.py

@@ -43,7 +43,6 @@ async def get_task_group_activity_list(
     superuser: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> list[TaskGroupActivityV2Read]:
-
     stm = select(TaskGroupActivityV2)
     if task_group_activity_id is not None:
         stm = stm.where(TaskGroupActivityV2.id == task_group_activity_id)
@@ -73,7 +72,6 @@ async def query_task_group(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> TaskGroupReadV2:
-
     task_group = await db.get(TaskGroupV2, task_group_id)
     if task_group is None:
         raise HTTPException(
@@ -96,7 +94,6 @@ async def query_task_group_list(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> list[TaskGroupReadV2]:
-
     stm = select(TaskGroupV2)
 
     if user_group_id is not None and private is True:

fractal_server/app/routes/api/v2/_aux_functions.py

@@ -333,7 +333,6 @@ async def _workflow_has_submitted_job(
     workflow_id: int,
     db: AsyncSession,
 ) -> bool:
-
     res = await db.execute(
         select(JobV2.id)
         .where(JobV2.status == JobStatusTypeV2.SUBMITTED)

fractal_server/app/routes/api/v2/_aux_functions_tasks.py

@@ -224,7 +224,6 @@ async def _get_collection_task_group_activity_status_message(
     task_group_id: int,
     db: AsyncSession,
 ) -> str:
-
     res = await db.execute(
         select(TaskGroupActivityV2)
         .where(TaskGroupActivityV2.taskgroupv2_id == task_group_id)

fractal_server/app/routes/api/v2/history.py

@@ -71,7 +71,6 @@ async def get_workflow_tasks_statuses(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> JSONResponse:
-
     # Access control
     workflow = await _get_workflow_check_owner(
         project_id=project_id,
@@ -335,7 +334,6 @@ async def get_history_images(
     db: AsyncSession = Depends(get_async_db),
     pagination: PaginationRequest = Depends(get_pagination_params),
 ) -> ImagePage:
-
     # Access control and object retrieval
     wftask = await get_wftask_check_owner(
         project_id=project_id,

fractal_server/app/routes/api/v2/images.py

@@ -31,7 +31,6 @@ router = APIRouter()
 
 
 class ImagePage(PaginationResponse[SingleImage]):
-
     attributes: dict[str, list[ImageAttributeValue]]
     types: list[str]
 
@@ -64,7 +63,6 @@ async def post_new_image(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> Response:
-
     output = await _get_dataset_check_owner(
         project_id=project_id, dataset_id=dataset_id, user_id=user.id, db=db
     )
@@ -117,7 +115,6 @@ async def query_dataset_images(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> ImagePage:
-
     page = pagination.page
     page_size = pagination.page_size
 
@@ -131,7 +128,6 @@ async def query_dataset_images(
     types = aggregate_types(images)
 
     if query is not None:
-
         if query.zarr_url is not None:
             image = next(
                 (
@@ -190,7 +186,6 @@ async def delete_dataset_images(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> Response:
-
     output = await _get_dataset_check_owner(
         project_id=project_id, dataset_id=dataset_id, user_id=user.id, db=db
     )

fractal_server/app/routes/api/v2/pre_submission_checks.py

@@ -96,7 +96,6 @@ async def check_non_processed_images(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> JSONResponse:
-
     db_workflow_task, db_workflow = await _get_workflow_task_check_owner(
         project_id=project_id,
         workflow_task_id=workflowtask_id,

fractal_server/app/routes/api/v2/submit.py

@@ -57,7 +57,6 @@ async def apply_workflow(
     user: UserOAuth = Depends(current_active_verified_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> JobReadV2 | None:
-
     # Remove non-submitted V2 jobs from the app state when the list grows
     # beyond a threshold
     settings = Inject(get_settings)

fractal_server/app/routes/api/v2/task_collection_custom.py

@@ -47,7 +47,6 @@ async def collect_task_custom(
     user: UserOAuth = Depends(current_active_verified_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> list[TaskReadV2]:
-
     settings = Inject(get_settings)
 
     # Validate query parameters related to user-group ownership
@@ -97,7 +96,6 @@ async def collect_task_custom(
                 )
 
     if task_collect.package_root is None:
-
         package_name_underscore = task_collect.package_name.replace("-", "_")
         # Note that python_command is then used as part of a subprocess.run
         # statement: be careful with mixing `'` and `"`.

fractal_server/app/routes/api/v2/task_collection_pixi.py

@@ -89,7 +89,6 @@ async def collect_task_pixi(
     user: UserOAuth = Depends(current_active_verified_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> TaskGroupActivityV2Read:
-
     settings = Inject(get_settings)
     # Check if Pixi is available
     if settings.pixi is None:

fractal_server/app/routes/api/v2/task_group.py

@@ -72,7 +72,6 @@ async def get_task_group_activity_list(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> list[TaskGroupActivityV2Read]:
-
     stm = select(TaskGroupActivityV2).where(
         TaskGroupActivityV2.user_id == user.id
     )
@@ -105,7 +104,6 @@ async def get_task_group_activity(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> TaskGroupActivityV2Read:
-
     activity = await db.get(TaskGroupActivityV2, task_group_activity_id)
 
     if activity is None:

fractal_server/app/routes/api/v2/task_group_lifecycle.py

@@ -115,7 +115,6 @@ async def deactivate_task_group(
     # Submit background task
     settings = Inject(get_settings)
     if settings.FRACTAL_RUNNER_BACKEND == "slurm_ssh":
-
         # Validate user settings (backend-specific)
         user_settings = await validate_user_settings(
             user=user, backend=settings.FRACTAL_RUNNER_BACKEND, db=db
@@ -242,7 +241,6 @@ async def reactivate_task_group(
     # Submit background task
     settings = Inject(get_settings)
     if settings.FRACTAL_RUNNER_BACKEND == "slurm_ssh":
-
         # Validate user settings (backend-specific)
         user_settings = await validate_user_settings(
             user=user, backend=settings.FRACTAL_RUNNER_BACKEND, db=db

fractal_server/app/routes/api/v2/task_version_update.py

@@ -78,7 +78,6 @@ async def get_workflow_version_update_candidates(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> list[list[TaskVersionRead]]:
-
     workflow = await _get_workflow_check_owner(
         project_id=project_id,
         workflow_id=workflow_id,
@@ -181,7 +180,6 @@ async def replace_workflowtask(
     user: UserOAuth = Depends(current_active_user),
     db: AsyncSession = Depends(get_async_db),
 ) -> WorkflowTaskReadV2:
-
     # Get objects from database
     workflow_task, workflow = await _get_workflow_task_check_owner(
         project_id=project_id,

fractal_server/app/routes/api/v2/workflow.py

@@ -147,7 +147,6 @@ async def update_workflow(
 
     for key, value in patch.model_dump(exclude_unset=True).items():
         if key == "reordered_workflowtask_ids":
-
             if await _workflow_has_submitted_job(
                 workflow_id=workflow_id, db=db
             ):
@@ -329,7 +328,6 @@ async def get_workflow_type_filters(
 
     response_items = []
     for wftask in workflow.task_list:
-
         # Compute input_type_filters, based on wftask and task manifest
         input_type_filters = merge_type_filters(
             wftask_type_filters=wftask.type_filters,

fractal_server/app/routes/auth/group.py

@@ -39,7 +39,6 @@ async def get_list_user_groups(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> list[UserGroupRead]:
-
     # Get all groups
     stm_all_groups = select(UserGroup)
     res = await db.execute(stm_all_groups)
@@ -88,7 +87,6 @@ async def create_single_group(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> UserGroupRead:
-
     # Check that name is not already in use
     existing_name_str = select(UserGroup).where(
         UserGroup.name == group_create.name
@@ -121,7 +119,6 @@ async def update_single_group(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> UserGroupRead:
-
     group = await _usergroup_or_404(group_id, db)
 
     # Patch `viewer_paths`
@@ -143,7 +140,6 @@ async def delete_single_group(
     user: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> Response:
-
     group = await _usergroup_or_404(group_id, db)
 
     if group.name == FRACTAL_DEFAULT_GROUP_NAME:
@@ -219,7 +215,6 @@ async def remove_user_from_group(
     superuser: UserOAuth = Depends(current_active_superuser),
     db: AsyncSession = Depends(get_async_db),
 ) -> UserGroupRead:
-
     # Check that user and group exist
     await _usergroup_or_404(group_id, db)
     user = await _user_or_404(user_id, db)

fractal_server/app/routes/pagination.py

@@ -11,7 +11,6 @@ T = TypeVar("T")
 
 
 class PaginationRequest(BaseModel):
-
     page: int = Field(ge=1)
     page_size: int | None = Field(ge=1)
 
@@ -38,7 +37,6 @@ def get_pagination_params(
 
 
 class PaginationResponse(BaseModel, Generic[T]):
-
     current_page: int = Field(ge=1)
     page_size: int = Field(ge=0)
     total_count: int = Field(ge=0)

fractal_server/app/runner/executors/local/runner.py

@@ -28,7 +28,6 @@ def run_single_task(
     parameters: dict[str, Any],
     task_files: TaskFiles,
 ):
-
     # Write args.json file
     with open(task_files.args_file_local, "w") as f:
         json.dump(parameters, f)
@@ -169,7 +168,6 @@ class LocalRunner(BaseRunner):
         exceptions: dict[int, BaseException] = {}
 
         try:
-
             self.validate_multisubmit_parameters(
                 list_parameters=list_parameters,
                 task_type=task_type,
@@ -208,7 +206,6 @@ class LocalRunner(BaseRunner):
 
         # Execute tasks, in chunks of size `parallel_tasks_per_job`
         for ind_chunk in range(0, n_elements, parallel_tasks_per_job):
-
             list_parameters_chunk = list_parameters[
                 ind_chunk : ind_chunk + parallel_tasks_per_job
             ]

fractal_server/app/runner/v2/db_tools.py

@@ -50,7 +50,6 @@ def bulk_update_status_of_history_unit(
     status: HistoryUnitStatus,
     db_sync: Session,
 ) -> None:
-
     len_history_unit_ids = len(history_unit_ids)
     logger.debug(
         f"[bulk_update_status_of_history_unit] {len_history_unit_ids=}."

fractal_server/app/runner/v2/merge_outputs.py

@@ -3,7 +3,6 @@ from fractal_server.app.runner.v2.task_interface import TaskOutput
 
 
 def merge_outputs(task_outputs: list[TaskOutput]) -> TaskOutput:
-
     if len(task_outputs) == 0:
         return TaskOutput()
 
@@ -11,7 +10,6 @@ def merge_outputs(task_outputs: list[TaskOutput]) -> TaskOutput:
     final_image_list_removals = []
 
     for task_output in task_outputs:
-
         final_image_list_updates.extend(task_output.image_list_updates)
         final_image_list_removals.extend(task_output.image_list_removals)
 

fractal_server/app/runner/v2/runner.py

@@ -415,7 +415,6 @@ def execute_tasks_v2(
             # Write current dataset images into the database.
             db_dataset = db.get(DatasetV2, dataset.id)
             if ENRICH_IMAGES_WITH_STATUS:
-
                 db_dataset.images = _remove_status_from_attributes(tmp_images)
             else:
                 db_dataset.images = tmp_images

fractal_server/app/runner/v2/task_interface.py

@@ -11,7 +11,6 @@ from fractal_server.types import ZarrUrlStr
 
 
 class TaskOutput(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     image_list_updates: list[SingleImageTaskOutput] = Field(
@@ -40,7 +39,6 @@ class TaskOutput(BaseModel):
 
 
 class InitArgsModel(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     zarr_url: ZarrUrlStr
@@ -48,14 +46,13 @@ class InitArgsModel(BaseModel):
 
 
 class InitTaskOutput(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     parallelization_list: list[InitArgsModel] = Field(default_factory=list)
 
 
 def _cast_and_validate_TaskOutput(
-    task_output: dict[str, Any]
+    task_output: dict[str, Any],
 ) -> TaskOutput | None:
     try:
         validated_task_output = TaskOutput(**task_output)

fractal_server/app/schemas/v2/accounting.py

@@ -6,7 +6,6 @@ from pydantic.types import AwareDatetime
 
 
 class AccountingRecordRead(BaseModel):
-
     id: int
     user_id: int
     timestamp: AwareDatetime

fractal_server/app/schemas/v2/project.py

@@ -9,14 +9,12 @@ from fractal_server.types import NonEmptyStr
 
 
 class ProjectCreateV2(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     name: NonEmptyStr
 
 
 class ProjectReadV2(BaseModel):
-
     id: int
     name: str
     timestamp_created: AwareDatetime
@@ -27,7 +25,6 @@ class ProjectReadV2(BaseModel):
 
 
 class ProjectUpdateV2(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     name: NonEmptyStr = None

fractal_server/app/schemas/v2/workflow.py

@@ -17,14 +17,12 @@ from fractal_server.types import NonEmptyStr
 
 
 class WorkflowCreateV2(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     name: NonEmptyStr
 
 
 class WorkflowReadV2(BaseModel):
-
     id: int
     name: str
     project_id: int
@@ -42,7 +40,6 @@ class WorkflowReadV2WithWarnings(WorkflowReadV2):
 
 
 class WorkflowUpdateV2(BaseModel):
-
     model_config = ConfigDict(extra="forbid")
 
     name: NonEmptyStr = None

fractal_server/config.py

@@ -95,10 +95,11 @@ class PixiSettings(BaseModel):
     PIXI_CONCURRENT_SOLVES: int = 4
     PIXI_CONCURRENT_DOWNLOADS: int = 4
     TOKIO_WORKER_THREADS: int = 2
+    DEFAULT_ENVIRONMENT: str = "default"
+    DEFAULT_PLATFORM: str = "linux-64"
 
     @model_validator(mode="after")
     def check_pixi_settings(self):
-
         if self.default_version not in self.versions:
             raise ValueError(
                 f"Default version '{self.default_version}' not in "
@@ -108,7 +109,6 @@ class PixiSettings(BaseModel):
         pixi_base_dir = Path(self.versions[self.default_version]).parent
 
         for key, value in self.versions.items():
-
             pixi_path = Path(value)
 
             if pixi_path.parent != pixi_base_dir:

fractal_server/data_migrations/2_14_10.py

@@ -15,7 +15,6 @@ def fix_db():
     logger.info("START execution of fix_db function")
 
     with next(get_sync_db()) as db:
-
         stm = select(HistoryRun).order_by(HistoryRun.id)
         history_runs = db.execute(stm).scalars().all()
 

fractal_server/main.py

@@ -83,7 +83,6 @@ async def lifespan(app: FastAPI):
     settings = Inject(get_settings)
 
     if settings.FRACTAL_RUNNER_BACKEND == "slurm_ssh":
-
         from fractal_server.ssh._fabric import FractalSSHList
 
         app.state.fractal_ssh_list = FractalSSHList()

fractal_server/migrations/versions/1eac13a26c83_drop_v1_tables.py

@@ -33,7 +33,6 @@ TABLES_V1 = [
 
 
 def upgrade() -> None:
-
     logger = logging.getLogger("alembic.runtime.migration")
 
     target_metadata = SQLModel.metadata

fractal_server/migrations/versions/501961cfcd85_remove_link_between_v1_and_v2_tasks_.py

@@ -18,7 +18,6 @@ depends_on = None
 
 
 def upgrade() -> None:
-
     with op.batch_alter_table("workflowtaskv2") as batch_op:
         batch_op.alter_column(
             "task_id", existing_type=sa.INTEGER(), nullable=False

fractal_server/tasks/v2/local/_utils.py

@@ -1,11 +1,18 @@
 from pathlib import Path
 
+from ..utils_pixi import simplify_pyproject_toml
 from fractal_server.app.schemas.v2 import TaskCreateV2
+from fractal_server.config import get_settings
 from fractal_server.logger import get_logger
+from fractal_server.logger import set_logger
+from fractal_server.syringe import Inject
 from fractal_server.tasks.v2.utils_templates import customize_template
 from fractal_server.utils import execute_command_sync
 
 
+logger = set_logger(__name__)
+
+
 def _customize_and_run_template(
     template_filename: str,
     replacements: list[tuple[str, str]],
@@ -69,3 +76,28 @@ def check_task_files_exist(task_list: list[TaskCreateV2]) -> None:
                     f"Task `{_task.name}` has `command_parallel` "
                     f"pointing to missing file `{_task_path}`."
                 )
+
+
+def edit_pyproject_toml_in_place_local(pyproject_toml_path: Path) -> None:
+    """
+    Wrapper of `simplify_pyproject_toml`, with I/O.
+    """
+
+    # Read `pyproject.toml`
+    with pyproject_toml_path.open() as f:
+        pyproject_contents = f.read()
+
+    # Simplify contents
+    settings = Inject(get_settings)
+    new_pyproject_contents = simplify_pyproject_toml(
+        original_toml_string=pyproject_contents,
+        pixi_environment=settings.pixi.DEFAULT_ENVIRONMENT,
+        pixi_platform=settings.pixi.DEFAULT_PLATFORM,
+    )
+    # Write new `pyproject.toml`
+    with pyproject_toml_path.open("w") as f:
+        f.write(new_pyproject_contents)
+    logger.debug(
+        f"Replaced local {pyproject_toml_path.as_posix()} "
+        "with simplified version."
+    )

fractal_server/tasks/v2/local/collect.py

@@ -99,7 +99,6 @@ def collect_local(
 
                 # Write wheel file and set task_group.archive_path
                 if wheel_file is not None:
-
                     archive_path = (
                         Path(task_group.path) / wheel_file.filename
                     ).as_posix()

fractal_server/tasks/v2/local/collect_pixi.py

@@ -7,6 +7,7 @@ from tempfile import TemporaryDirectory
 from ..utils_database import create_db_tasks_and_update_task_group_sync
 from ..utils_pixi import parse_collect_stdout
 from ..utils_pixi import SOURCE_DIR_NAME
+from ._utils import edit_pyproject_toml_in_place_local
 from fractal_server.app.db import get_sync_db
 from fractal_server.app.schemas.v2 import FractalUploadedFile
 from fractal_server.app.schemas.v2 import TaskGroupActivityActionV2
@@ -134,6 +135,11 @@ def collect_local_pixi(
                 activity.log = get_current_log(log_file_path)
                 activity = add_commit_refresh(obj=activity, db=db)
 
+                # Simplify `pyproject.toml`
+                source_dir = Path(task_group.path, SOURCE_DIR_NAME).as_posix()
+                pyproject_toml_path = Path(source_dir, "pyproject.toml")
+                edit_pyproject_toml_in_place_local(pyproject_toml_path)
+
                 # Run script 2
                 _customize_and_run_template(
                     template_filename="pixi_2_install.sh",
@@ -160,7 +166,6 @@ def collect_local_pixi(
                 ]
 
                 # Make task folder 755
-                source_dir = Path(task_group.path, SOURCE_DIR_NAME).as_posix()
                 command = f"chmod -R 755 {source_dir}"
                 execute_command_sync(
                     command=command,
@@ -205,11 +210,7 @@ def collect_local_pixi(
                     "Add env_info, venv_size and venv_file_number "
                     "to TaskGroupV2 - start"
                 )
-                with Path(
-                    task_group.path,
-                    SOURCE_DIR_NAME,
-                    "pixi.lock",
-                ).open() as f:
+                with Path(source_dir, "pixi.lock").open() as f:
                     pixi_lock_contents = f.read()
 
                 # NOTE: see issue 2626 about whether to keep `pixi.lock` files

fractal_server/tasks/v2/local/deactivate.py

@@ -72,7 +72,6 @@ def deactivate_local(
                 return
 
             try:
-
                 activity.status = TaskGroupActivityStatusV2.ONGOING
                 activity = add_commit_refresh(obj=activity, db=db)
 
@@ -115,7 +114,6 @@ def deactivate_local(
 
                 # Handle some specific cases for wheel-file case
                 if task_group.origin == TaskGroupV2OriginEnum.WHEELFILE:
-
                     logger.info(
                         f"Handle specific cases for {task_group.origin=}."
                     )

fractal_server/tasks/v2/local/deactivate_pixi.py

@@ -66,7 +66,6 @@ def deactivate_local_pixi(
                 return
 
             try:
-
                 activity.status = TaskGroupActivityStatusV2.ONGOING
                 activity = add_commit_refresh(obj=activity, db=db)
 

fractal_server/tasks/v2/local/reactivate_pixi.py

@@ -7,6 +7,7 @@ from ..utils_background import add_commit_refresh
 from ..utils_background import fail_and_cleanup
 from ..utils_background import get_activity_and_task_group
 from ..utils_pixi import SOURCE_DIR_NAME
+from ._utils import edit_pyproject_toml_in_place_local
 from fractal_server.app.db import get_sync_db
 from fractal_server.app.schemas.v2 import TaskGroupActivityActionV2
 from fractal_server.app.schemas.v2.task_group import TaskGroupActivityStatusV2
@@ -121,6 +122,10 @@ def reactivate_local_pixi(
                 activity.log = get_current_log(log_file_path)
                 activity = add_commit_refresh(obj=activity, db=db)
 
+                # Simplify `pyproject.toml`
+                pyproject_toml_path = Path(source_dir, "pyproject.toml")
+                edit_pyproject_toml_in_place_local(pyproject_toml_path)
+
                 # Write pixi.lock into `source_dir`
                 logger.debug(f"start - writing {source_dir}/pixi.lock")
                 with Path(source_dir, "pixi.lock").open("w") as f:

fractal_server/tasks/v2/ssh/_utils.py

@@ -4,12 +4,18 @@ from pathlib import Path
 from sqlalchemy.ext.asyncio import AsyncSession
 
 from ..utils_background import fail_and_cleanup
+from ..utils_pixi import simplify_pyproject_toml
 from fractal_server.app.models.v2 import TaskGroupActivityV2
 from fractal_server.app.models.v2 import TaskGroupV2
+from fractal_server.config import get_settings
 from fractal_server.logger import get_logger
+from fractal_server.logger import set_logger
 from fractal_server.ssh._fabric import FractalSSH
+from fractal_server.syringe import Inject
 from fractal_server.tasks.v2.utils_templates import customize_template
 
+logger = set_logger(__name__)
+
 
 def _customize_and_run_template(
     *,
@@ -126,3 +132,35 @@ def check_ssh_or_fail_and_cleanup(
             db=db,
         )
         return False
+
+
+def edit_pyproject_toml_in_place_ssh(
+    *,
+    fractal_ssh: FractalSSH,
+    pyproject_toml_path: Path,
+) -> None:
+    """
+    Wrapper of `simplify_pyproject_toml`, with I/O.
+    """
+
+    # Read `pyproject.toml`
+    pyproject_contents = fractal_ssh.read_remote_text_file(
+        pyproject_toml_path.as_posix()
+    )
+
+    # Simplify contents
+    settings = Inject(get_settings)
+    new_pyproject_contents = simplify_pyproject_toml(
+        original_toml_string=pyproject_contents,
+        pixi_environment=settings.pixi.DEFAULT_ENVIRONMENT,
+        pixi_platform=settings.pixi.DEFAULT_PLATFORM,
+    )
+    # Write new `pyproject.toml`
+    fractal_ssh.write_remote_file(
+        path=pyproject_toml_path.as_posix(),
+        content=new_pyproject_contents,
+    )
+    logger.debug(
+        f"Replaced remote {pyproject_toml_path.as_posix()} "
+        "with simplified version."
+    )

fractal_server/tasks/v2/ssh/collect.py

@@ -84,7 +84,6 @@ def collect_ssh(
                 ssh_config=ssh_config,
                 logger_name=LOGGER_NAME,
             ) as fractal_ssh:
-
                 try:
                     # Check SSH connection
                     ssh_ok = check_ssh_or_fail_and_cleanup(

fractal_server/tasks/v2/ssh/collect_pixi.py

@@ -9,6 +9,7 @@ from ..utils_database import create_db_tasks_and_update_task_group_sync
 from ..utils_pixi import parse_collect_stdout
 from ..utils_pixi import SOURCE_DIR_NAME
 from ._utils import check_ssh_or_fail_and_cleanup
+from ._utils import edit_pyproject_toml_in_place_ssh
 from fractal_server.app.db import get_sync_db
 from fractal_server.app.schemas.v2 import FractalUploadedFile
 from fractal_server.app.schemas.v2 import TaskGroupActivityActionV2
@@ -80,7 +81,6 @@ def collect_ssh_pixi(
                 ssh_config=ssh_config,
                 logger_name=LOGGER_NAME,
             ) as fractal_ssh:
-
                 try:
                     # Check SSH connection
                     ssh_ok = check_ssh_or_fail_and_cleanup(
@@ -191,6 +191,16 @@ def collect_ssh_pixi(
                     activity.log = get_current_log(log_file_path)
                     activity = add_commit_refresh(obj=activity, db=db)
 
+                    # Simplify `pyproject.toml`
+                    source_dir = Path(
+                        task_group.path, SOURCE_DIR_NAME
+                    ).as_posix()
+                    pyproject_toml_path = Path(source_dir, "pyproject.toml")
+                    edit_pyproject_toml_in_place_ssh(
+                        fractal_ssh=fractal_ssh,
+                        pyproject_toml_path=pyproject_toml_path,
+                    )
+
                     stdout = _customize_and_run_template(
                         template_filename="pixi_2_install.sh",
                         replacements=replacements,
@@ -218,9 +228,6 @@ def collect_ssh_pixi(
                         "project_python_wrapper"
                     ]
 
-                    source_dir = Path(
-                        task_group.path, SOURCE_DIR_NAME
-                    ).as_posix()
                     fractal_ssh.run_command(cmd=f"chmod -R 755 {source_dir}")
 
                     # Read and validate remote manifest file

fractal_server/tasks/v2/ssh/deactivate.py

@@ -155,7 +155,6 @@ def deactivate_ssh(
 
                     # Handle some specific cases for wheel-file case
                     if task_group.origin == TaskGroupV2OriginEnum.WHEELFILE:
-
                         logger.info(
                             f"Handle specific cases for {task_group.origin=}."
                         )

fractal_server/tasks/v2/ssh/reactivate_pixi.py

@@ -6,6 +6,7 @@ from ..utils_background import fail_and_cleanup
 from ..utils_background import get_activity_and_task_group
 from ..utils_pixi import SOURCE_DIR_NAME
 from ._utils import check_ssh_or_fail_and_cleanup
+from ._utils import edit_pyproject_toml_in_place_ssh
 from fractal_server.app.db import get_sync_db
 from fractal_server.app.schemas.v2 import TaskGroupActivityActionV2
 from fractal_server.app.schemas.v2 import TaskGroupActivityStatusV2
@@ -161,6 +162,15 @@ def reactivate_ssh_pixi(
                     activity.log = get_current_log(log_file_path)
                     activity = add_commit_refresh(obj=activity, db=db)
 
+                    # Simplify `pyproject.toml`
+                    source_dir = Path(
+                        task_group.path, SOURCE_DIR_NAME
+                    ).as_posix()
+                    pyproject_toml_path = Path(source_dir, "pyproject.toml")
+                    edit_pyproject_toml_in_place_ssh(
+                        fractal_ssh=fractal_ssh,
+                        pyproject_toml_path=pyproject_toml_path,
+                    )
                     # Write pixi.lock into `source_dir`
                     pixi_lock_local = Path(tmpdir, "pixi.lock").as_posix()
                     pixi_lock_remote = Path(

fractal_server/tasks/v2/utils_pixi.py

@@ -1,5 +1,12 @@
+import tomllib
 from typing import TypedDict
 
+import tomli_w
+
+from fractal_server.logger import set_logger
+
+logger = set_logger(__name__)
+
 SOURCE_DIR_NAME = "source_dir"
 
 
@@ -36,3 +43,63 @@ def parse_collect_stdout(stdout: str) -> ParsedOutput:
             attribute_value = actual_line.split(search)[-1].strip(" ")
             attributes[attribute_name] = attribute_value
     return attributes
+
+
+def simplify_pyproject_toml(
+    *,
+    original_toml_string: str,
+    pixi_environment: str,
+    pixi_platform: str,
+) -> str:
+    """
+    Simplify `pyproject.toml` contents to make `pixi install` less heavy.
+
+    Args:
+        original_toml_string: Original `pyproject.toml` contents
+        environment: Name of the pixi environment to use (e.g. `default`).
+        target_platform: Name of the platform (e.g. `linux-64`)
+
+    Returns:
+        New `pyproject.toml` contents
+    """
+
+    # Parse TOML string
+    data = tomllib.loads(original_toml_string)
+    try:
+        pixi_data = data["tool"]["pixi"]
+    except KeyError:
+        logger.warning(
+            "KeyError when looking for tool/pixi path. Return original value."
+        )
+        return original_toml_string
+
+    # Use a single platform (or skip, if not set)
+    try:
+        pixi_data["workspace"]["platforms"] = [pixi_platform]
+    except KeyError:
+        logger.info("KeyError for workspace/platforms - skip.")
+
+    # Keep a single environment (or skip, if not set)
+    try:
+        current_environments = pixi_data["environments"]
+        pixi_data["environments"] = {
+            key: value
+            for key, value in current_environments.items()
+            if key == pixi_environment
+        }
+        if pixi_data["environments"] == {}:
+            raise ValueError(
+                f"No '{pixi_environment}' pixi environment found."
+            )
+    except KeyError:
+        logger.info("KeyError for workspace/platforms - skip.")
+
+    # Drop pixi.tasks
+    pixi_data.pop("tasks", None)
+
+    # Prepare and validate new `pyprojectl.toml` contents
+    data["tool"]["pixi"] = pixi_data
+    new_toml_string = tomli_w.dumps(data)
+    tomllib.loads(new_toml_string)
+
+    return new_toml_string

fractal_server/tasks/v2/utils_python_interpreter.py

@@ -5,7 +5,7 @@ from fractal_server.syringe import Inject
 
 
 def get_python_interpreter_v2(
-    python_version: Literal["3.9", "3.10", "3.11", "3.12"]
+    python_version: Literal["3.9", "3.10", "3.11", "3.12"],
 ) -> str:
     """
     Return the path to the Python interpreter

fractal_server/types/validators/_filter_validators.py

@@ -4,7 +4,7 @@ from ._common_validators import valdict_keys
 
 
 def validate_attribute_filters(
-    attribute_filters: dict[str, list[int | float | str | bool]]
+    attribute_filters: dict[str, list[int | float | str | bool]],
 ) -> dict[str, list[Any]]:
     attribute_filters = valdict_keys(attribute_filters)
     for key, values in attribute_filters.items():

fractal_server/zip_tools.py

@@ -62,7 +62,6 @@ def _zip_folder_to_byte_stream_iterator(folder: str) -> Iterator:
         return iterfile()
 
     else:
-
         byte_stream = _create_zip(folder, output=BytesIO())
         return iter([byte_stream.getvalue()])
 

{fractal_server-2.15.3.dist-info → fractal_server-2.15.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: fractal-server
-Version: 2.15.3
+Version: 2.15.4
 Summary: Backend component of the Fractal analytics platform
 License: BSD-3-Clause
 Author: Tommaso Comparin
@@ -23,6 +23,7 @@ Requires-Dist: pydantic-settings (>=2.7.0)
 Requires-Dist: python-dotenv (>=1.1.0,<1.2.0)
 Requires-Dist: sqlalchemy[asyncio] (>=2.0.23,<2.1)
 Requires-Dist: sqlmodel (==0.0.24)
+Requires-Dist: tomli_w (>=1.2.0,<1.3.0)
 Requires-Dist: uvicorn (>=0.29.0,<0.35.0)
 Requires-Dist: uvicorn-worker (==0.3.0)
 Project-URL: Documentation, https://fractal-analytics-platform.github.io/fractal-server

{fractal_server-2.15.3.dist-info → fractal_server-2.15.4.dist-info}/RECORD

@@ -1,4 +1,4 @@
-fractal_server/__init__.py,sha256=TohihjKSFnz5CZYMVH94PEv_l0OHohZckQFN39DhyqE,23
+fractal_server/__init__.py,sha256=oQyZUHcUuOnv7ZqsoVjwEhBSMPbobwbvTyb3GUD_ZT8,23
 fractal_server/__main__.py,sha256=rkM8xjY1KeS3l63irB8yCrlVobR-73uDapC4wvrIlxI,6957
 fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
 fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -13,51 +13,51 @@ fractal_server/app/models/v2/accounting.py,sha256=i-2TsjqyuclxFQ21C-TeDoss7ZBTRu
 fractal_server/app/models/v2/dataset.py,sha256=P_zy4dPQAqrCALQ6737VkAFk1SvcgYjnslGUZhPI8sc,1226
 fractal_server/app/models/v2/history.py,sha256=CBN2WVg9vW5pHU1RP8TkB_nnJrwnuifCcxgnd53UtEE,2163
 fractal_server/app/models/v2/job.py,sha256=e3Un_rUgWC-KazGLDQqy17NQK_2ZsL3EmEmDAky_bN0,1998
-fractal_server/app/models/v2/project.py,sha256=RmU5BQR4HD6xifRndUhvPBy30wntml-giBRoEysdWXw,755
+fractal_server/app/models/v2/project.py,sha256=XLna1SSKdywdDS3qfcVaGtafyVKMZq6CiLvHOe-AjhU,754
 fractal_server/app/models/v2/task.py,sha256=iBIQB8POQE5MyKvLZhw7jZWlBhbrThzCDzRTcgiAczQ,1493
-fractal_server/app/models/v2/task_group.py,sha256=1cn14RKKOOCCjh42iaT-HyuRrRpCPcYhWRrlMK-Enwc,3857
-fractal_server/app/models/v2/workflow.py,sha256=wuK9SV1TXrlYcieYLYj5fGvV3K3bW7g9jCM1uv9HHjA,1058
+fractal_server/app/models/v2/task_group.py,sha256=-x-BLtE2biV6kR0hENFgcq3N0B1QuLehdUWhCCO34tk,3856
+fractal_server/app/models/v2/workflow.py,sha256=gBjDXO-RytVT81aAlesImBhmVHrwNUrmsF_UsGa1qLM,1057
 fractal_server/app/models/v2/workflowtask.py,sha256=qkTc-hcFLpJUVsEUbnDq2BJL0qg9jagy2doZeusF1ek,1266
 fractal_server/app/routes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/routes/admin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/routes/admin/v2/__init__.py,sha256=_5lqb6-M8-fZqE1HRMep6pAFYRUKMxrvbZOKs-RXWkw,933
-fractal_server/app/routes/admin/v2/accounting.py,sha256=YPWwCWylXrJpV4bq_dJ3t6Kn5uuveTrFx-5w1wzfETU,3594
+fractal_server/app/routes/admin/v2/accounting.py,sha256=-eLzBirENvdhjhrCf6bs1pTriIui19DAr_k-zuJB7Y8,3593
 fractal_server/app/routes/admin/v2/impersonate.py,sha256=gc4lshfEPFR6W2asH7aKu6hqE6chzusdhAUVV9p51eU,1131
-fractal_server/app/routes/admin/v2/job.py,sha256=VcyXHYjieOKnTAi1NsiO_bK3A6UufUwX2lmWCwa4sa0,7585
+fractal_server/app/routes/admin/v2/job.py,sha256=fl_1hWrriCA24OPlHZhxfnM1j0C4UL5hqjcG1ww8Fac,7584
 fractal_server/app/routes/admin/v2/project.py,sha256=MA_LdoEuSuisSGRO43TapMuJ080y5iaUGSAUgKuuKOg,1188
-fractal_server/app/routes/admin/v2/task.py,sha256=93QIbWZNnqaBhG9R9-RStDX2mpqRNN3G7BIb0KM-jeE,4312
-fractal_server/app/routes/admin/v2/task_group.py,sha256=biibAvMPD2w-267eyTm3wH2s3mITjiS5gYzwCCwmLbI,7099
+fractal_server/app/routes/admin/v2/task.py,sha256=8njjq_zcvNW-Ewxn7WfsRQbs_aV5h-7pgcRIAegzTnc,4308
+fractal_server/app/routes/admin/v2/task_group.py,sha256=JUCxKnwSNmOKyh6lpqfG5jT5BuRE_U2X6HqD5VVhWPg,7096
 fractal_server/app/routes/admin/v2/task_group_lifecycle.py,sha256=2J3M9VXWD_0j9jRTZ5APuUXl9E-aVv0qF8K02vvcO3s,9150
 fractal_server/app/routes/api/__init__.py,sha256=B8l6PSAhR10iZqHEiyTat-_0tkeKdrCigIE6DJGP5b8,638
 fractal_server/app/routes/api/v2/__init__.py,sha256=D3sRRsqkmZO6kBxUjg40q0aRDsnuXI4sOOfn0xF9JsM,2820
-fractal_server/app/routes/api/v2/_aux_functions.py,sha256=YU7yT9L6yc01VMWozXPnRcx0X0063rTylmeU6PKNyKM,14260
+fractal_server/app/routes/api/v2/_aux_functions.py,sha256=tfnxqbufKqd5dbFUzOFlRPc9EgURhpNa5V2V4agzndg,14259
 fractal_server/app/routes/api/v2/_aux_functions_history.py,sha256=Z23xwvBaVEEQ5B-JsWZJpjj4_QqoXqHYONztnbAH6gw,4425
 fractal_server/app/routes/api/v2/_aux_functions_task_lifecycle.py,sha256=GpKfw9yj01LmOAuNMTOreU1PFkCKpjK5oCt7_wp35-A,6741
 fractal_server/app/routes/api/v2/_aux_functions_task_version_update.py,sha256=WLDOYCnb6fnS5avKflyx6yN24Vo1n5kJk5ZyiKbzb8Y,1175
-fractal_server/app/routes/api/v2/_aux_functions_tasks.py,sha256=MNty8CBnTMPSAKE5gMT7tCY8QWpCQyhft_shq12hHpA,12208
+fractal_server/app/routes/api/v2/_aux_functions_tasks.py,sha256=-KTPouwPQga5SGe2n0diWm-Fev31DPAfXKMo6PijBSI,12207
 fractal_server/app/routes/api/v2/_aux_task_group_disambiguation.py,sha256=8x1_q9FyCzItnPmdSdLQuwUTy4B9xCsXscp97_lJcpM,4635
 fractal_server/app/routes/api/v2/dataset.py,sha256=6u4MFqJ3YZ0Zq6Xx8CRMrTPKW55ZaR63Uno21DqFr4Q,8889
-fractal_server/app/routes/api/v2/history.py,sha256=ErLqkJbhx9XzHL4KQvMraVAtD9WOmDNh5tZi5wmNkL0,17114
-fractal_server/app/routes/api/v2/images.py,sha256=TS1ltUhP0_SaViupdHrSh3MLDi5OVk-lOhE1VCVyZj0,7869
+fractal_server/app/routes/api/v2/history.py,sha256=03QPe08pyy-NWEe21NVKprsLgqxljQO4gMZ8plt9wys,17112
+fractal_server/app/routes/api/v2/images.py,sha256=amQz2uoaeSSuUeYfjfQ_zyEak6h_F7KSgI5RM81cqDI,7864
 fractal_server/app/routes/api/v2/job.py,sha256=8xRTwh_OCHmK9IfI_zUASa2ozewR0qu0zVBl_a4IvHw,6467
-fractal_server/app/routes/api/v2/pre_submission_checks.py,sha256=2jaaM5WJBTGpOWhm6a42JViT8j4X5hixltxIY1p-188,4936
+fractal_server/app/routes/api/v2/pre_submission_checks.py,sha256=AEN6w2X5kCkSpZydudvuTPhl_VZUQ4zUav6D3NiF6r8,4935
 fractal_server/app/routes/api/v2/project.py,sha256=ldMEyjtwGpX2teu85sCNWaubDFlw-En8U1SA7G1VaIw,4567
 fractal_server/app/routes/api/v2/status_legacy.py,sha256=ZckHeBy8y21cyQ_OLY-VmkapzMhd3g9ae-qg-r4-uVo,6317
-fractal_server/app/routes/api/v2/submit.py,sha256=_BDkWtFdo8-p7kZ0Oxaidei04MfuBeaEsWtwJaKZQ_Y,8781
+fractal_server/app/routes/api/v2/submit.py,sha256=3RPfpuMWEp-orB6iUQCQYmxXu9nRC0m1V5-dznsDrks,8780
 fractal_server/app/routes/api/v2/task.py,sha256=ptS47XtxnHzk9bPNZV24Wfroo5sP19RE0-LsfX0ZvOc,7018
 fractal_server/app/routes/api/v2/task_collection.py,sha256=UcS7tb9RjiDimeI-iWwD0wqnXYQEdEZT56PnPa0zC9Q,12233
-fractal_server/app/routes/api/v2/task_collection_custom.py,sha256=3EZAzTVlt3wrHAuwxfcYo7LpHefLCcQUctZuolJOQHE,6728
-fractal_server/app/routes/api/v2/task_collection_pixi.py,sha256=LS5xOYRRvI25TyvPWR9anxQt3emTfuV610zUVKc7eJU,7518
-fractal_server/app/routes/api/v2/task_group.py,sha256=Wmp5Rt6NQm8_EbdJyi3XOkTXxJTTd4MNIy0ja6K-ifA,9205
-fractal_server/app/routes/api/v2/task_group_lifecycle.py,sha256=-uS_z8E3__t_twEqhZOzcEcAxZsgnpg-c7Ya9RF3_bs,9998
-fractal_server/app/routes/api/v2/task_version_update.py,sha256=o8W_C0I84X0u8gAMnCvi8ChiVAKrb5WzUBuJLSuujCA,8235
-fractal_server/app/routes/api/v2/workflow.py,sha256=SfjegoVO4DaGmDD7OPhWNLkcvZhJKwNX4DTQAcVKk9Q,10699
+fractal_server/app/routes/api/v2/task_collection_custom.py,sha256=j-vI1_FjoxU59VwkwUTYW5HhMVB5NObMkWLCjAKbers,6726
+fractal_server/app/routes/api/v2/task_collection_pixi.py,sha256=1rCBfKANT9zcKcOVMQTByVpP8GjdrzeaMzyQT05k0nY,7517
+fractal_server/app/routes/api/v2/task_group.py,sha256=DrXMc0D7IYqUsrlrpF5JO1zVKvx7RPdKPPOhz3FqqJE,9203
+fractal_server/app/routes/api/v2/task_group_lifecycle.py,sha256=itsldN_aYT_-wuCmwAoVKbH8D6eZpL_z89gCBZDM5cg,9996
+fractal_server/app/routes/api/v2/task_version_update.py,sha256=RoeN21kYvBwc8xLcJZ8t0hZtl32P3FhMqiofntHyrjQ,8233
+fractal_server/app/routes/api/v2/workflow.py,sha256=n0sRsDHGrjDAoo_0klqoYW4AuZ1LajWtlzEd6gKmvps,10697
 fractal_server/app/routes/api/v2/workflow_import.py,sha256=kOGDaCj0jCGK1WSYGbnUjtUg2U1YxUY9UMH-2ilqJg4,9027
 fractal_server/app/routes/api/v2/workflowtask.py,sha256=5_SQAG8ztDnaaRXwKalcO69HVpSl-QbrhiI7fCP3YRI,7924
 fractal_server/app/routes/auth/__init__.py,sha256=fao6CS0WiAjHDTvBzgBVV_bSXFpEAeDBF6Z6q7rRkPc,1658
 fractal_server/app/routes/auth/_aux_auth.py,sha256=UZgauY0V6mSqjte_sYI1cBl2h8bcbLaeWzgpl1jdJlk,4883
 fractal_server/app/routes/auth/current_user.py,sha256=EjkwMxUA0l6FLbDJdertHGnuOoSS-HEysmm6l5FkAlY,5903
-fractal_server/app/routes/auth/group.py,sha256=P6naOD11Jud2IbdXKpHVjrdRo3IKAqnyXspT8k49k_w,7893
+fractal_server/app/routes/auth/group.py,sha256=VBeV5PbSYkyevvg2USrMPHR2sD1DUp8IsDyhC2Gb7vI,7888
 fractal_server/app/routes/auth/login.py,sha256=tSu6OBLOieoBtMZB4JkBAdEgH2Y8KqPGSbwy7NIypIo,566
 fractal_server/app/routes/auth/oauth.py,sha256=KCtJHSzemC4S8AfX9bLLdVhlF1nU4DOyox-sNQtcWew,1978
 fractal_server/app/routes/auth/register.py,sha256=DlHq79iOvGd_gt2v9uwtsqIKeO6i_GKaW59VIkllPqY,587
@@ -67,7 +67,7 @@ fractal_server/app/routes/aux/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5N
 fractal_server/app/routes/aux/_job.py,sha256=XWyWpOObcV55YyK7uzGRlaslmPDCBZy4hiSZBpoa_bg,616
 fractal_server/app/routes/aux/_runner.py,sha256=spNudutueHTBJPhm55RlOuYzb31DhyheSjl2rk6dloM,873
 fractal_server/app/routes/aux/validate_user_settings.py,sha256=FLVi__8YFcm_6c_K5uMQo7raWWXQLBcZtx8yaPO4jaE,2301
-fractal_server/app/routes/pagination.py,sha256=jjzYG40KecXTc23fDl5-hg_wt3_sVMWowblkLS_mY_E,1176
+fractal_server/app/routes/pagination.py,sha256=IGy8Ll5lYr6ENYE18h3huH5s0GMX1DCs5VdCi6j1cdk,1174
 fractal_server/app/runner/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/runner/components.py,sha256=-Ii5l8d_V6f5DFOd-Zsr8VYmOsyqw0Hox9fEFQiuqxY,66
 fractal_server/app/runner/exceptions.py,sha256=tJxs7WCQ86kjezunFm4o_VAiUAyD70l3GiH6ht0waWA,3958
@@ -76,7 +76,7 @@ fractal_server/app/runner/executors/base_runner.py,sha256=7ujN6gN92X9sWAlDwkc07G
 fractal_server/app/runner/executors/call_command_wrapper.py,sha256=1BHl-zbXoX2oGUWGAFprVZMmg5QjutPH0-VZJSIC0II,1419
 fractal_server/app/runner/executors/local/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/runner/executors/local/get_local_config.py,sha256=KBYOkcuwpSYl-ZIAwPBxpn59QSyFF8eJ-fLKVIhwwzA,3594
-fractal_server/app/runner/executors/local/runner.py,sha256=DZK_oVxjIewyo7tjB7HvTds0nDHxIbpLJ4ABn4Mly8w,10841
+fractal_server/app/runner/executors/local/runner.py,sha256=syJcUYkdKeGYbD33VzuX9Ysr7OjK34TkZjB7xvkzqXU,10838
 fractal_server/app/runner/executors/slurm_common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/app/runner/executors/slurm_common/_batching.py,sha256=gbHZIxt90GjUwhB9_UInwVqpX-KdxRQMDeXzUagdL3U,8816
 fractal_server/app/runner/executors/slurm_common/_job_states.py,sha256=nuV-Zba38kDrRESOVB3gaGbrSPZc4q7YGichQaeqTW0,238
@@ -100,37 +100,37 @@ fractal_server/app/runner/v2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
 fractal_server/app/runner/v2/_local.py,sha256=tTJgABK-zAZmmRzoie_MPNTXJx_zBAXiZiiWl1CC2qo,3035
 fractal_server/app/runner/v2/_slurm_ssh.py,sha256=JlDngsVSOUNqEubDl-5jkIxQQmV4mhTqbMbJVY_rL6M,2840
 fractal_server/app/runner/v2/_slurm_sudo.py,sha256=Gvsh4tUlc1_3KdF3B7zEqs-YIntC_joLtTGSNFbKKSs,2939
-fractal_server/app/runner/v2/db_tools.py,sha256=du5dKhMMFMErQXbGIgu9JvO_vtMensodyPsyDeqz1yQ,3324
+fractal_server/app/runner/v2/db_tools.py,sha256=ozp4RFLB3LNI0rM0q0udi6ja8-5vooH_dVqrbmTPNDg,3323
 fractal_server/app/runner/v2/deduplicate_list.py,sha256=IVTE4abBU1bUprFTkxrTfYKnvkNTanWQ-KWh_etiT08,645
-fractal_server/app/runner/v2/merge_outputs.py,sha256=D1L4Taieq9i71SPQyNc1kMokgHh-sV_MqF3bv7QMDBc,907
-fractal_server/app/runner/v2/runner.py,sha256=84aEfpMMEXxCWyhJckGpkC9REEoBNnV_MshAMuwKZlE,18990
+fractal_server/app/runner/v2/merge_outputs.py,sha256=YOTKbGOM9s-uqY4KN2onoIxuHNm-v3hr5zv6Aa1KEtA,905
+fractal_server/app/runner/v2/runner.py,sha256=IsQhSxASVI-yPBO2G2uuVvZkRIoAlSY6Ev7gcSYmDOw,18989
 fractal_server/app/runner/v2/runner_functions.py,sha256=aEwEDzI2l-QvgfJSj-M2LGvqA89nOiJYIFVryKEq_3M,18988
 fractal_server/app/runner/v2/submit_workflow.py,sha256=AMnXdozwIGlXD55ch0_SNAG-ntKBO-QRhkbInrvsShU,13140
-fractal_server/app/runner/v2/task_interface.py,sha256=V2TWBK6tbhycyMrJvFaoJ9IpuKlrLrvmjJbfNMsBBXo,2527
+fractal_server/app/runner/v2/task_interface.py,sha256=BRSKpitGproY48JQdCbfrghbDonA-EqPP1yIopohpPo,2525
 fractal_server/app/runner/versions.py,sha256=4BW-8Et8RVgILgpFoUJLWkEnZz53pv8hv_2ucG480ns,398
 fractal_server/app/schemas/__init__.py,sha256=stURAU_t3AOBaH0HSUbV-GKhlPKngnnIMoqWc3orFyI,135
 fractal_server/app/schemas/user.py,sha256=t9nbyYjGCSOsxm9K97PDG3-9o27CsaFfhWb_L5nrjqA,1910
 fractal_server/app/schemas/user_group.py,sha256=x3-kqbo0q2wTP7QI0iZ7PU_9Dr957UYrFMKqS7BXLhE,1425
 fractal_server/app/schemas/user_settings.py,sha256=NpdC0Me0fgwwdfJuTSlFLCnLUjiWWzrJlPn_UPLjXnw,1862
 fractal_server/app/schemas/v2/__init__.py,sha256=GqV6kJ0nKDq2vsSA4uph-nb5pmuaq013LUCcm9LbpLE,3097
-fractal_server/app/schemas/v2/accounting.py,sha256=Wylt7uWTiDIFlHJOh4XEtYitk2FjFlmnodDrJDxcr0E,397
+fractal_server/app/schemas/v2/accounting.py,sha256=C_ekrYQwhi7PtrxxB07oVAG2y1NLigXjYwyp4E38fao,396
 fractal_server/app/schemas/v2/dataset.py,sha256=NKCjBwGBC7mPiSlXktZAcleJsvlLY6KfNKw7Wx4Zfqk,1728
 fractal_server/app/schemas/v2/dumps.py,sha256=MoQHjKZy-_ujSfr7XmZ6FjB_VR-zLedx9XJj_sp5xvc,2210
 fractal_server/app/schemas/v2/history.py,sha256=pZiMKfh6nMWbTp5MUtrnGySPKbeRFf5tM1VLFaTgGcw,1784
 fractal_server/app/schemas/v2/job.py,sha256=fPay7dLSr-skKRdVRoZig8rf_sZwUdVdHZaJ4XM8vMI,3288
 fractal_server/app/schemas/v2/manifest.py,sha256=QUpXMDB8WkB1F4UK-yYmm3O8bXoHwDGURnqwn6ayO_I,6674
-fractal_server/app/schemas/v2/project.py,sha256=l96-3bCfB3knhITaLj1WSyBgbzP_k8CdtvgX_5jO_fU,657
+fractal_server/app/schemas/v2/project.py,sha256=7UC0aZLgtmkaAiPykeUj-9OZXhMkoyi3V-475UW_EQs,654
 fractal_server/app/schemas/v2/status_legacy.py,sha256=eQT1zGxbkzSwd0EqclsOdZ60n1x6J3DB1CZ3m4LYyxc,955
 fractal_server/app/schemas/v2/task.py,sha256=IJv8loB4kx9FBkaIHoiMsswQyq02FxvyAnHK1u074fU,4364
 fractal_server/app/schemas/v2/task_collection.py,sha256=EPGe4bTRka-Y3S3_h6Wfmstq1889Cn-5cZ9ODdnsKG8,4154
 fractal_server/app/schemas/v2/task_group.py,sha256=NwU3FRPzPtoEhunE7dcF3su20dxaL_4YJQw4fPnTcgo,3231
-fractal_server/app/schemas/v2/workflow.py,sha256=JtjxbDO52bmY06WUMACUKpFSdJysO4DBv7wezsvODRQ,1775
+fractal_server/app/schemas/v2/workflow.py,sha256=L-dW6SzCH_VNoH6ENip44lTgGGqVYHHBk_3PtM-Ooy8,1772
 fractal_server/app/schemas/v2/workflowtask.py,sha256=6eweAMyziwaoMT-7R1fVJYunIeZKzT0-7fAVgPO_FEc,3639
 fractal_server/app/security/__init__.py,sha256=oJ8RVglpOvWPQY4RokiE2YA72Nqo42dZEjywWTt8xr8,14032
 fractal_server/app/security/signup_email.py,sha256=Xd6QYxcdmg0PHpDwmUE8XQmPcOj3Xjy5oROcIMhmltM,1472
 fractal_server/app/user_settings.py,sha256=OP1yiYKtPadxwM51_Q0hdPk3z90TCN4z1BLpQsXyWiU,1316
-fractal_server/config.py,sha256=JvFF2nbXOKI6WPKv2UwvJmT4loStBytdG8EU6qZckY8,28259
-fractal_server/data_migrations/2_14_10.py,sha256=gMRR5QB0SDv0ToEiXVLg1VrHprM_Ii-9O1Kg-ZF-YhY,1599
+fractal_server/config.py,sha256=oVNGnbyLhvVzcFnCPS4UCCEXbAVyACZR_u4fDsBa534,28337
+fractal_server/data_migrations/2_14_10.py,sha256=jzMg2c1zNO8C_Nho_9_EZJD6kR1-gkFNpNrMR5Hr8hM,1598
 fractal_server/data_migrations/README.md,sha256=_3AEFvDg9YkybDqCLlFPdDmGJvr6Tw7HRI14aZ3LOIw,398
 fractal_server/data_migrations/tools.py,sha256=LeMeASwYGtEqd-3wOLle6WARdTGAimoyMmRbbJl-hAM,572
 fractal_server/exceptions.py,sha256=7ftpWwNsTQmNonWCynhH5ErUh1haPPhIaVPrNHla7-o,53
@@ -140,18 +140,18 @@ fractal_server/images/models.py,sha256=6WchcIzLLLwdkLNRfg71Dl4Y-9UFLPyrrzh1lWgju
 fractal_server/images/status_tools.py,sha256=KICcThwHniHNkDftzJmK_n2gQK2IeTKlR_PFAesf204,4912
 fractal_server/images/tools.py,sha256=92kmt2Fnyp8ycTbyuar9_U8kJTi0wKpBk8ZagARWl9Y,4177
 fractal_server/logger.py,sha256=QIeVn3QpZsiIL2jDdrKotr-MLyDcZYgiPiTluFU46lE,5317
-fractal_server/main.py,sha256=FD9KzTTsXTQnTW0z3Hu7y0Nj_oAkBeZEInKDXFd4hjE,4561
+fractal_server/main.py,sha256=0lh7JQGt7e6wekLHzhiSWURKzkE8GeRz6lhlCWjF8Ho,4560
 fractal_server/migrations/env.py,sha256=nfyBpMIOT3kny6t-b-tUjyRjZ4k906bb1_wCQ7me1BI,1353
 fractal_server/migrations/naming_convention.py,sha256=htbKrVdetx3pklowb_9Cdo5RqeF0fJ740DNecY5de_M,265
 fractal_server/migrations/versions/034a469ec2eb_task_groups.py,sha256=vrPhC8hfFu1c4HmLHNZyCuqEfecFD8-bWc49bXMNes0,6199
 fractal_server/migrations/versions/091b01f51f88_add_usergroup_and_linkusergroup_table.py,sha256=-BSS9AFTPcu3gYC-sYbawSy4MWQQx8TfMb5BW5EBKmQ,1450
 fractal_server/migrations/versions/19eca0dd47a9_user_settings_project_dir.py,sha256=Q1Gj1cJ0UrdLBJ5AXfFK9QpxTtmcv-4Z3NEGDnxOme4,961
-fractal_server/migrations/versions/1eac13a26c83_drop_v1_tables.py,sha256=ok8dl4IkI-dfsyE_NZ8IndjQrnQ_g6CDZo4PwozpIwE,1605
+fractal_server/migrations/versions/1eac13a26c83_drop_v1_tables.py,sha256=7OW3HmqAePHx53OWdEPzNxvtupxSR0lB_6tZF1b3JIM,1604
 fractal_server/migrations/versions/316140ff7ee1_remove_usersettings_cache_dir.py,sha256=lANgTox0rz459_yo1Rw7fGCT1qw5sUCUXTLUMc_Bzf8,911
 fractal_server/migrations/versions/47351f8c7ebc_drop_dataset_filters.py,sha256=vePkVm1iUHiPNKLQ3KR7BBLdHruqBdl87j_tUCbMbEA,1414
 fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py,sha256=-wHe-fOffmYeAm0JXVl_lxZ7hhDkaEVqxgxpHkb_uL8,954
 fractal_server/migrations/versions/4cedeb448a53_workflowtask_foreign_keys_not_nullables.py,sha256=Mob8McGYAcmgvrseyyYOa54E6Gsgr-4SiGdC-r9O4_A,1157
-fractal_server/migrations/versions/501961cfcd85_remove_link_between_v1_and_v2_tasks_.py,sha256=5ROUgcoZOdjf8kMt6cxuvPhzHmV6xaCxvZEbhUEyZM4,3271
+fractal_server/migrations/versions/501961cfcd85_remove_link_between_v1_and_v2_tasks_.py,sha256=JOrVa6mGzqZ6H61YCFVOed64vFRjTWGWyN3z7NE3T08,3270
 fractal_server/migrations/versions/50a13d6138fd_initial_schema.py,sha256=zwXegXs9J40eyCWi3w0c_iIBVJjXNn4VdVnQaT3KxDg,8770
 fractal_server/migrations/versions/5bf02391cfef_v2.py,sha256=axhNkr_H6R4rRbY7oGYazNbFvPXeSyBDWFVbKNmiqs8,8433
 fractal_server/migrations/versions/70e77f1c38b0_add_applyworkflow_first_task_index_and_.py,sha256=Q-DsMzG3IcUV2Ol1dhJWosDvKERamBE6QvA2zzS5zpQ,1632
@@ -192,21 +192,21 @@ fractal_server/tasks/__init__.py,sha256=kadmVUoIghl8s190_Tt-8f-WBqMi8u8oU4Pvw39N
 fractal_server/tasks/utils.py,sha256=V7dj8o2AnoHhGSTYlqJHcRFhCIpmOrMOUhtiE_DvRVA,291
 fractal_server/tasks/v2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/tasks/v2/local/__init__.py,sha256=S842wRersYKBKjc7xbmj0ov8b5i1YuCHa2f_yYuxcaI,312
-fractal_server/tasks/v2/local/_utils.py,sha256=p2KJ4BvEwJxahICpzbvzrc5-ciLCFnLXWPCwdNGi-3Q,2495
-fractal_server/tasks/v2/local/collect.py,sha256=MQncScKbWv3g9lrjF8WOhzuEoTEOOgS02RqOJno5csI,11897
-fractal_server/tasks/v2/local/collect_pixi.py,sha256=coV9SqOf5rz2dgUFG7uVisPFS0xvXEubFwU7rb3QHe8,10753
-fractal_server/tasks/v2/local/deactivate.py,sha256=LoEs2TUoHQOq3JfxufW6zroXD-Xx_b-hLtdigEBi1JU,9732
-fractal_server/tasks/v2/local/deactivate_pixi.py,sha256=_ycvnLIZ8zUFB3fZbCzDlNudh-SSetl4UkyFrClCcUU,3494
+fractal_server/tasks/v2/local/_utils.py,sha256=vhi0LKWXeU4-2xVYe1G52-wzfl11fxgkM9SDFGo-NlM,3485
+fractal_server/tasks/v2/local/collect.py,sha256=mO1gDIQH5VbpvFQL4H37RhFRlQ1h7dInqy9RASiiBx4,11896
+fractal_server/tasks/v2/local/collect_pixi.py,sha256=Ej4ovQeFZMTN-ZQNjMZDwRxSWivEWAS233CIZlEzWDc,10897
+fractal_server/tasks/v2/local/deactivate.py,sha256=0gIOk8Cych-QCMwKPcw29tTly3pBzmWtqsJS8JseNyo,9730
+fractal_server/tasks/v2/local/deactivate_pixi.py,sha256=x9YCILEP1EjCrZccAcj5C5i0NBzqSXQc2L-r3hfOL6s,3493
 fractal_server/tasks/v2/local/reactivate.py,sha256=Q43DOadNeFyyfgNP67lUqaXmZsS6onv67XwxH_-5ANA,5756
-fractal_server/tasks/v2/local/reactivate_pixi.py,sha256=X1gdeuFGPtohjWEZ7OX2v8m6aI7Z93M-y64FqtYjApg,7320
+fractal_server/tasks/v2/local/reactivate_pixi.py,sha256=IuxDRaj8i6Rc582TIbc9HVKQ9pOvR4IepyXSaJx2PfQ,7565
 fractal_server/tasks/v2/ssh/__init__.py,sha256=vX5aIM9Hbn2T_cIP_LrZ5ekRqJzYm_GSfp-4Iv7kqeI,300
-fractal_server/tasks/v2/ssh/_utils.py,sha256=ktVH7psQSAhh353fVUe-BwiBZHzTdgXnR-Xv_vfuX0Y,3857
-fractal_server/tasks/v2/ssh/collect.py,sha256=M9gFD1h9Q1Z-BFQq65dI0vFs6HPCkKQzOkxaLddmChY,14334
-fractal_server/tasks/v2/ssh/collect_pixi.py,sha256=MYxHY5P69P7DdM4uC8FAsAoQBuqr8UJdDti0CPHAn_U,13801
-fractal_server/tasks/v2/ssh/deactivate.py,sha256=XAIy84cLT9MSTMiN67U-wfOjxMm5s7lmrGwhW0qp7BU,12439
+fractal_server/tasks/v2/ssh/_utils.py,sha256=jMe3eg2duad8wtGS_RD6oOIvA0LyJEg5cn--qanGuwE,4954
+fractal_server/tasks/v2/ssh/collect.py,sha256=WesUBtNaax9ST7CtgqAD2qd-ZII4t1JFPzRzltEOuM8,14333
+fractal_server/tasks/v2/ssh/collect_pixi.py,sha256=PWv-5cQFLA3n4NeFsTU-zfE1xWEy8LoLvHy41gRtWW8,14169
+fractal_server/tasks/v2/ssh/deactivate.py,sha256=7gJ2mOah0wKwUnK0S9QpaXg08_WE95P0rC-oExAGhLE,12438
 fractal_server/tasks/v2/ssh/deactivate_pixi.py,sha256=K0yK_NPUqhFMj6cp6G_0Kfn0Yo7oQux4kT5dFPulnos,4748
 fractal_server/tasks/v2/ssh/reactivate.py,sha256=NJIgMNFKaXMhbvK0iZOsMwMtsms6Boj9f8N4L01X9Bo,8271
-fractal_server/tasks/v2/ssh/reactivate_pixi.py,sha256=Vay6kfsrc5XKx2WJVTu_pLhgpuHZDdnrEB6Er8XchYo,9784
+fractal_server/tasks/v2/ssh/reactivate_pixi.py,sha256=JGP19nbmCCuE8Ya7sBfgrm78vORM0bF0tkt3bWakvF0,10281
 fractal_server/tasks/v2/templates/1_create_venv.sh,sha256=PK0jdHKtQpda1zULebBaVPORt4t6V17wa4N1ohcj5ac,548
 fractal_server/tasks/v2/templates/2_pip_install.sh,sha256=jMJPQJXHKznO6fxOOXtFXKPdCmTf1VLLWj_JL_ZdKxo,1644
 fractal_server/tasks/v2/templates/3_pip_freeze.sh,sha256=JldREScEBI4cD_qjfX4UK7V4aI-FnX9ZvVNxgpSOBFc,168
@@ -219,19 +219,19 @@ fractal_server/tasks/v2/templates/pixi_3_post_install.sh,sha256=99J8KXkNeQk9utuE
 fractal_server/tasks/v2/utils_background.py,sha256=_4wGETgZ3JdnJXLYKSI0Lns8LwokJL-NEzUOK5SxCJU,4811
 fractal_server/tasks/v2/utils_database.py,sha256=yi7793Uue32O59OBVUgomO42oUrVKdSKXoShBUNDdK0,1807
 fractal_server/tasks/v2/utils_package_names.py,sha256=RDg__xrvQs4ieeVzmVdMcEh95vGQYrv9Hfal-5EDBM8,2393
-fractal_server/tasks/v2/utils_pixi.py,sha256=QrRVtN8SZM_ZDoRadXK98R27irOvTJuZO4c_mCfJ92A,1221
-fractal_server/tasks/v2/utils_python_interpreter.py,sha256=5_wrlrTqXyo1YuLZvAW9hrSoh5MyLOzdPVUlUwM7uDQ,955
+fractal_server/tasks/v2/utils_pixi.py,sha256=VNcHNaHH8uceEtBvuiD-hCjkJHutAP6F4BbEVrAKfbU,3102
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 fractal_server/types/__init__.py,sha256=aA_8J1xXzuiLqpwO_Qf18-qzaRcYkHzevhH_T-diXWM,2026
 fractal_server/types/validators/__init__.py,sha256=5uj6KJ9MelFZgyoq3MzXLhgWCl0yiriS7XKmb0gathg,392
 fractal_server/types/validators/_common_validators.py,sha256=MpxyaP2kwgbyCTOaVRjYnJ74Lfi0f2X0q3rjX9w3vTk,1170
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 fractal_server/types/validators/_workflow_task_arguments_validators.py,sha256=HL7NgV8d56XbcD6gG5PVFUPMHjDm5Q-d7cXhVLdFAGU,387
 fractal_server/urls.py,sha256=QjIKAC1a46bCdiPMu3AlpgFbcv6a4l3ABcd5xz190Og,471
 fractal_server/utils.py,sha256=Vn35lApt1T1J8nc09sAVqd10Cy0sa3dLipcljI-hkuk,2185
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