fractal-server 2.14.15__py3-none-any.whl → 2.15.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. fractal_server/__init__.py +1 -1
  2. fractal_server/app/models/security.py +2 -2
  3. fractal_server/app/models/user_settings.py +2 -2
  4. fractal_server/app/models/v2/dataset.py +3 -3
  5. fractal_server/app/models/v2/history.py +2 -0
  6. fractal_server/app/models/v2/job.py +6 -6
  7. fractal_server/app/models/v2/task.py +12 -8
  8. fractal_server/app/models/v2/task_group.py +19 -7
  9. fractal_server/app/models/v2/workflowtask.py +6 -6
  10. fractal_server/app/routes/admin/v2/task_group_lifecycle.py +2 -5
  11. fractal_server/app/routes/api/v2/__init__.py +6 -0
  12. fractal_server/app/routes/api/v2/_aux_functions_tasks.py +22 -0
  13. fractal_server/app/routes/api/v2/history.py +2 -2
  14. fractal_server/app/routes/api/v2/pre_submission_checks.py +3 -3
  15. fractal_server/app/routes/api/v2/task_collection.py +8 -18
  16. fractal_server/app/routes/api/v2/task_collection_custom.py +2 -2
  17. fractal_server/app/routes/api/v2/task_collection_pixi.py +219 -0
  18. fractal_server/app/routes/api/v2/task_group.py +3 -0
  19. fractal_server/app/routes/api/v2/task_group_lifecycle.py +26 -10
  20. fractal_server/app/runner/executors/slurm_common/_slurm_config.py +10 -0
  21. fractal_server/app/runner/executors/slurm_common/base_slurm_runner.py +39 -14
  22. fractal_server/app/runner/executors/slurm_common/get_slurm_config.py +8 -1
  23. fractal_server/app/runner/executors/slurm_ssh/runner.py +3 -1
  24. fractal_server/app/runner/v2/runner.py +2 -2
  25. fractal_server/app/schemas/v2/__init__.py +1 -1
  26. fractal_server/app/schemas/v2/dumps.py +1 -1
  27. fractal_server/app/schemas/v2/task_collection.py +1 -1
  28. fractal_server/app/schemas/v2/task_group.py +7 -5
  29. fractal_server/config.py +70 -0
  30. fractal_server/images/status_tools.py +80 -75
  31. fractal_server/migrations/versions/791ce783d3d8_add_indices.py +41 -0
  32. fractal_server/migrations/versions/b1e7f7a1ff71_task_group_for_pixi.py +53 -0
  33. fractal_server/migrations/versions/b3ffb095f973_json_to_jsonb.py +340 -0
  34. fractal_server/ssh/_fabric.py +29 -0
  35. fractal_server/tasks/v2/local/__init__.py +3 -0
  36. fractal_server/tasks/v2/local/_utils.py +4 -3
  37. fractal_server/tasks/v2/local/collect.py +26 -30
  38. fractal_server/tasks/v2/local/collect_pixi.py +252 -0
  39. fractal_server/tasks/v2/local/deactivate.py +39 -46
  40. fractal_server/tasks/v2/local/deactivate_pixi.py +98 -0
  41. fractal_server/tasks/v2/local/reactivate.py +12 -23
  42. fractal_server/tasks/v2/local/reactivate_pixi.py +184 -0
  43. fractal_server/tasks/v2/ssh/__init__.py +3 -0
  44. fractal_server/tasks/v2/ssh/_utils.py +50 -9
  45. fractal_server/tasks/v2/ssh/collect.py +46 -56
  46. fractal_server/tasks/v2/ssh/collect_pixi.py +315 -0
  47. fractal_server/tasks/v2/ssh/deactivate.py +54 -67
  48. fractal_server/tasks/v2/ssh/deactivate_pixi.py +122 -0
  49. fractal_server/tasks/v2/ssh/reactivate.py +25 -38
  50. fractal_server/tasks/v2/ssh/reactivate_pixi.py +233 -0
  51. fractal_server/tasks/v2/templates/pixi_1_extract.sh +40 -0
  52. fractal_server/tasks/v2/templates/pixi_2_install.sh +52 -0
  53. fractal_server/tasks/v2/templates/pixi_3_post_install.sh +76 -0
  54. fractal_server/tasks/v2/utils_background.py +50 -8
  55. fractal_server/tasks/v2/utils_pixi.py +38 -0
  56. fractal_server/tasks/v2/utils_templates.py +14 -1
  57. {fractal_server-2.14.15.dist-info → fractal_server-2.15.0.dist-info}/METADATA +4 -4
  58. {fractal_server-2.14.15.dist-info → fractal_server-2.15.0.dist-info}/RECORD +61 -47
  59. {fractal_server-2.14.15.dist-info → fractal_server-2.15.0.dist-info}/LICENSE +0 -0
  60. {fractal_server-2.14.15.dist-info → fractal_server-2.15.0.dist-info}/WHEEL +0 -0
  61. {fractal_server-2.14.15.dist-info → fractal_server-2.15.0.dist-info}/entry_points.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: fractal-server
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- Version: 2.14.15
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+ Version: 2.15.0
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  Summary: Backend component of the Fractal analytics platform
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  License: BSD-3-Clause
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  Author: Tommaso Comparin
@@ -11,16 +11,16 @@ Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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  Requires-Dist: alembic (>=1.13.1,<2.0.0)
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- Requires-Dist: cryptography (>=44.0.1,<44.1.0)
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+ Requires-Dist: cryptography (>=45.0.3,<45.1.0)
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  Requires-Dist: fabric (>=3.2.2,<3.3.0)
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  Requires-Dist: fastapi (>=0.115.0,<0.116.0)
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  Requires-Dist: fastapi-users[oauth] (>=14,<15)
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  Requires-Dist: gunicorn (>=23.0,<24.0)
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- Requires-Dist: packaging (>=24.0.0,<25.0.0)
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+ Requires-Dist: packaging (>=25.0.0,<26.0.0)
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  Requires-Dist: psycopg[binary] (>=3.1.0,<4.0.0)
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  Requires-Dist: pydantic (>=2.11.0,<2.12.0)
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  Requires-Dist: pydantic-settings (>=2.7.0)
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- Requires-Dist: python-dotenv (>=1.0.0,<1.1.0)
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+ Requires-Dist: python-dotenv (>=1.1.0,<1.2.0)
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  Requires-Dist: sqlalchemy[asyncio] (>=2.0.23,<2.1)
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  Requires-Dist: sqlmodel (==0.0.24)
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  Requires-Dist: uvicorn (>=0.29.0,<0.35.0)
@@ -1,4 +1,4 @@
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- fractal_server/__init__.py,sha256=1lO5LXhx8fwsKnWQVdnMtEvVmWkDE9cZ0L2RpkoG0O8,24
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+ fractal_server/__init__.py,sha256=1lql2CxPFs0mwol6UzjLDvQgpH9GjV7Hky5lqWDSf4Y,23
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  fractal_server/__main__.py,sha256=rkM8xjY1KeS3l63irB8yCrlVobR-73uDapC4wvrIlxI,6957
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  fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
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  fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -6,18 +6,18 @@ fractal_server/app/db/__init__.py,sha256=EFzcf6iKemWlOSRj4vtDT63hAE9HBYWh4abYOdD
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  fractal_server/app/models/__init__.py,sha256=xJWiGAwpXmCpnFMC4c_HTqoUCzMOXrakoGLUH_uMvdA,415
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  fractal_server/app/models/linkusergroup.py,sha256=3KkkE4QIUAlTrBAZs_tVy0pGvAxUAq6yOEjflct_z2M,678
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  fractal_server/app/models/linkuserproject.py,sha256=hvaxh3Lkiy2uUCwB8gvn8RorCpvxSSdzWdCS_U1GL7g,315
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- fractal_server/app/models/security.py,sha256=PVZ3nTZO3TYpOTLiMARNy2mHAET49i6nE7bKxn1H-vQ,3836
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- fractal_server/app/models/user_settings.py,sha256=RxzRBGLHF_wc5csrTeHGUSV77Md_X0Lf-SnYVOsEWHc,1263
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+ fractal_server/app/models/security.py,sha256=NfR0I4dRbOEmCWOKeEHyFO-uqhSJ11dS0B6yWtZRqs4,3852
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+ fractal_server/app/models/user_settings.py,sha256=WdnrLOP2w8Nqh_3K-4-b-8a7XEC9ILrE6SfbYoTk-7Y,1279
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  fractal_server/app/models/v2/__init__.py,sha256=vjHwek7-IXmaZZL9VF0nD30YL9ca4wNc8P4RXJK_kDc,832
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  fractal_server/app/models/v2/accounting.py,sha256=i-2TsjqyuclxFQ21C-TeDoss7ZBTRuXdzIJfVr2UxwE,1081
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- fractal_server/app/models/v2/dataset.py,sha256=B_bPnYCSLRFN-vBIOc5nJ31JTruQPxLda9mqpPIJmGk,1209
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- fractal_server/app/models/v2/history.py,sha256=XsaUb2HNIfVekaxfdpFOG2Y6q5QyTm1SO2shl8dLYQ0,2123
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- fractal_server/app/models/v2/job.py,sha256=LfpwAedMVcA_6Ne0Rr4g3tt0asAQkWz3LSPm7IwZhYc,1978
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+ fractal_server/app/models/v2/dataset.py,sha256=P_zy4dPQAqrCALQ6737VkAFk1SvcgYjnslGUZhPI8sc,1226
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+ fractal_server/app/models/v2/history.py,sha256=CBN2WVg9vW5pHU1RP8TkB_nnJrwnuifCcxgnd53UtEE,2163
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+ fractal_server/app/models/v2/job.py,sha256=e3Un_rUgWC-KazGLDQqy17NQK_2ZsL3EmEmDAky_bN0,1998
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  fractal_server/app/models/v2/project.py,sha256=RmU5BQR4HD6xifRndUhvPBy30wntml-giBRoEysdWXw,755
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- fractal_server/app/models/v2/task.py,sha256=P7nsS5mCmVyzr4WtcjoiedesqkWvkHA2cQPsMbQt-7o,1427
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- fractal_server/app/models/v2/task_group.py,sha256=shnEBZSNmlYVtF3LSuBkTj4hOI5MqbCko-HgqukCeh4,3468
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+ fractal_server/app/models/v2/task.py,sha256=3XyVkeyqaZEN_6-13ZWXXOMswaoVzk0kF2dKO2L7k1w,1493
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+ fractal_server/app/models/v2/task_group.py,sha256=1cn14RKKOOCCjh42iaT-HyuRrRpCPcYhWRrlMK-Enwc,3857
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  fractal_server/app/models/v2/workflow.py,sha256=wuK9SV1TXrlYcieYLYj5fGvV3K3bW7g9jCM1uv9HHjA,1058
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- fractal_server/app/models/v2/workflowtask.py,sha256=tph237DXitOnzSv88rk9qgN2VmlI1smWS5fNYHR8jMo,1200
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+ fractal_server/app/models/v2/workflowtask.py,sha256=HWCNfgpINkZJsSMBy6-2PaBQTizKSdB11IASAoMk-gw,1220
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  fractal_server/app/routes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  fractal_server/app/routes/admin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  fractal_server/app/routes/admin/v2/__init__.py,sha256=_5lqb6-M8-fZqE1HRMep6pAFYRUKMxrvbZOKs-RXWkw,933
@@ -27,28 +27,29 @@ fractal_server/app/routes/admin/v2/job.py,sha256=EOnW645RaacyNof55O_NV_4ONyb7ihM
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  fractal_server/app/routes/admin/v2/project.py,sha256=MA_LdoEuSuisSGRO43TapMuJ080y5iaUGSAUgKuuKOg,1188
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  fractal_server/app/routes/admin/v2/task.py,sha256=93QIbWZNnqaBhG9R9-RStDX2mpqRNN3G7BIb0KM-jeE,4312
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  fractal_server/app/routes/admin/v2/task_group.py,sha256=biibAvMPD2w-267eyTm3wH2s3mITjiS5gYzwCCwmLbI,7099
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- fractal_server/app/routes/admin/v2/task_group_lifecycle.py,sha256=aEevPwQhlx0NPcXH6tDtIIUZEJ6a5ZJ-7eHWf7XMXOE,9226
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+ fractal_server/app/routes/admin/v2/task_group_lifecycle.py,sha256=2J3M9VXWD_0j9jRTZ5APuUXl9E-aVv0qF8K02vvcO3s,9150
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  fractal_server/app/routes/api/__init__.py,sha256=B8l6PSAhR10iZqHEiyTat-_0tkeKdrCigIE6DJGP5b8,638
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- fractal_server/app/routes/api/v2/__init__.py,sha256=3i4Aa-sgXq5Bb21hjONRilAloz0olagem1uIJB_WaRo,2625
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+ fractal_server/app/routes/api/v2/__init__.py,sha256=D3sRRsqkmZO6kBxUjg40q0aRDsnuXI4sOOfn0xF9JsM,2820
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  fractal_server/app/routes/api/v2/_aux_functions.py,sha256=P5exwdiNm0ZxtoGw4wxvm_-u8e83gXz8iYEVFuUq_cU,12792
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  fractal_server/app/routes/api/v2/_aux_functions_history.py,sha256=Z23xwvBaVEEQ5B-JsWZJpjj4_QqoXqHYONztnbAH6gw,4425
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  fractal_server/app/routes/api/v2/_aux_functions_task_lifecycle.py,sha256=GpKfw9yj01LmOAuNMTOreU1PFkCKpjK5oCt7_wp35-A,6741
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  fractal_server/app/routes/api/v2/_aux_functions_task_version_update.py,sha256=WLDOYCnb6fnS5avKflyx6yN24Vo1n5kJk5ZyiKbzb8Y,1175
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- fractal_server/app/routes/api/v2/_aux_functions_tasks.py,sha256=MFYnyNPBACSHXTDLXe6cSennnpmlpajN84iivOOMW7Y,11599
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+ fractal_server/app/routes/api/v2/_aux_functions_tasks.py,sha256=MNty8CBnTMPSAKE5gMT7tCY8QWpCQyhft_shq12hHpA,12208
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  fractal_server/app/routes/api/v2/_aux_task_group_disambiguation.py,sha256=8x1_q9FyCzItnPmdSdLQuwUTy4B9xCsXscp97_lJcpM,4635
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  fractal_server/app/routes/api/v2/dataset.py,sha256=6u4MFqJ3YZ0Zq6Xx8CRMrTPKW55ZaR63Uno21DqFr4Q,8889
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- fractal_server/app/routes/api/v2/history.py,sha256=BEmf_ENF5HNMy8yXrxRdo4280rWuRUa1Jw4u8R9-LQQ,15477
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+ fractal_server/app/routes/api/v2/history.py,sha256=BHBZYFSF5lw-YYOl0OVV5yEZPMxiqjH72_KwR66EtaE,15495
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  fractal_server/app/routes/api/v2/images.py,sha256=TS1ltUhP0_SaViupdHrSh3MLDi5OVk-lOhE1VCVyZj0,7869
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  fractal_server/app/routes/api/v2/job.py,sha256=8xRTwh_OCHmK9IfI_zUASa2ozewR0qu0zVBl_a4IvHw,6467
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- fractal_server/app/routes/api/v2/pre_submission_checks.py,sha256=122MlfYwBBIw39bo9b3xuhvzBG20olPvjCzudAxX8H4,4909
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+ fractal_server/app/routes/api/v2/pre_submission_checks.py,sha256=2jaaM5WJBTGpOWhm6a42JViT8j4X5hixltxIY1p-188,4936
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  fractal_server/app/routes/api/v2/project.py,sha256=ldMEyjtwGpX2teu85sCNWaubDFlw-En8U1SA7G1VaIw,4567
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  fractal_server/app/routes/api/v2/status_legacy.py,sha256=ZckHeBy8y21cyQ_OLY-VmkapzMhd3g9ae-qg-r4-uVo,6317
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- fractal_server/app/routes/api/v2/task_collection.py,sha256=FGMhTnU88Umd8nMdriUYPtpTtAHcRBRrZIYyOesFhrU,12577
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- fractal_server/app/routes/api/v2/task_collection_custom.py,sha256=EfGpv6W7xDyuYYp6E7XAcXLJiLNAImUHFqMDLgfh-4s,6730
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- fractal_server/app/routes/api/v2/task_group.py,sha256=M96VoKcLqOpZlY0RWnsHza8jN0dzAWK9lxw87Om3Fbw,9063
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- fractal_server/app/routes/api/v2/task_group_lifecycle.py,sha256=C2U2V76YbbqDWmErJ98MH9C2C26Lve2p_35FZ1dNmXg,9095
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+ fractal_server/app/routes/api/v2/task_collection.py,sha256=UcS7tb9RjiDimeI-iWwD0wqnXYQEdEZT56PnPa0zC9Q,12233
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+ fractal_server/app/routes/api/v2/task_collection_custom.py,sha256=3EZAzTVlt3wrHAuwxfcYo7LpHefLCcQUctZuolJOQHE,6728
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+ fractal_server/app/routes/api/v2/task_collection_pixi.py,sha256=LS5xOYRRvI25TyvPWR9anxQt3emTfuV610zUVKc7eJU,7518
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+ fractal_server/app/routes/api/v2/task_group.py,sha256=Wmp5Rt6NQm8_EbdJyi3XOkTXxJTTd4MNIy0ja6K-ifA,9205
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+ fractal_server/app/routes/api/v2/task_group_lifecycle.py,sha256=-uS_z8E3__t_twEqhZOzcEcAxZsgnpg-c7Ya9RF3_bs,9998
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- fractal_server/app/runner/executors/slurm_common/_slurm_config.py,sha256=Zv2l_6X1EfSHGRqcBMj2dbai_kP8hfuMfh-WoIUj0tY,15646
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- fractal_server/app/runner/executors/slurm_common/base_slurm_runner.py,sha256=2F2zgg3DJKAJ5LecFAzMSGLFmsMiM4lMk4Kh9It35F4,35626
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- fractal_server/app/runner/executors/slurm_common/get_slurm_config.py,sha256=VJNryceLzF5_fx9_lS1nGq85EW8rOQ0KrgtMATcfdQc,7271
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+ fractal_server/app/runner/executors/slurm_common/_slurm_config.py,sha256=U9BONnnwn8eDqDevwUtFSBcvIsxvNgDHirhcQGJ9t9E,15947
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+ fractal_server/app/runner/executors/slurm_common/base_slurm_runner.py,sha256=iXRlTuPvBqqq_I-WYF2IRocPEayMCBxCSJkn_eop6t4,36226
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+ fractal_server/app/runner/executors/slurm_common/get_slurm_config.py,sha256=jhoFHauWJm55bIC_v7pFylbK8WgcRJemGu2OjUiRbpQ,7377
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- fractal_server/app/runner/v2/runner.py,sha256=vi5AAHl-MZwq0FMMCfdgzXv4DB8cCDWsAqvTdpaXh9Q,18972
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+ fractal_server/app/schemas/v2/dumps.py,sha256=MoQHjKZy-_ujSfr7XmZ6FjB_VR-zLedx9XJj_sp5xvc,2210
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+ fractal_server/app/schemas/v2/task_collection.py,sha256=EPGe4bTRka-Y3S3_h6Wfmstq1889Cn-5cZ9ODdnsKG8,4154
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+ fractal_server/tasks/v2/ssh/__init__.py,sha256=vX5aIM9Hbn2T_cIP_LrZ5ekRqJzYm_GSfp-4Iv7kqeI,300
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+ fractal_server/tasks/v2/ssh/_utils.py,sha256=ktVH7psQSAhh353fVUe-BwiBZHzTdgXnR-Xv_vfuX0Y,3857
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+ fractal_server/tasks/v2/templates/pixi_1_extract.sh,sha256=Jdy5OyKo2jxe_qIDB9Zi4a0FL0cMBysxvBPHlUrARQM,1099
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+ fractal_server/tasks/v2/templates/pixi_2_install.sh,sha256=h6-M101Q1AdAfZNZyPfSUc8AlZ-uS84Hae4vJdDSglY,1601
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+ fractal_server/tasks/v2/templates/pixi_3_post_install.sh,sha256=99J8KXkNeQk9utuEtUxfAZS6VCThC32X7I7HAp2gdTU,2501
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@@ -216,8 +230,8 @@ fractal_server/types/validators/_workflow_task_arguments_validators.py,sha256=HL
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  fractal_server/zip_tools.py,sha256=tqz_8f-vQ9OBRW-4OQfO6xxY-YInHTyHmZxU7U4PqZo,4885
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- fractal_server-2.14.15.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
220
- fractal_server-2.14.15.dist-info/METADATA,sha256=Sz4teXD8HvAhlbNjhwBKfOiswHcP47lMAIMnHK6puVU,4244
221
- fractal_server-2.14.15.dist-info/WHEEL,sha256=7dDg4QLnNKTvwIDR9Ac8jJaAmBC_owJrckbC0jjThyA,88
222
- fractal_server-2.14.15.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
223
- fractal_server-2.14.15.dist-info/RECORD,,
233
+ fractal_server-2.15.0.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
234
+ fractal_server-2.15.0.dist-info/METADATA,sha256=BDrHl5UNb4zkg65yrXGfLvrnORfHyaiRBQq-THCL1hs,4243
235
+ fractal_server-2.15.0.dist-info/WHEEL,sha256=7dDg4QLnNKTvwIDR9Ac8jJaAmBC_owJrckbC0jjThyA,88
236
+ fractal_server-2.15.0.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
237
+ fractal_server-2.15.0.dist-info/RECORD,,