fractal-server 2.12.0a0__py3-none-any.whl → 2.12.0a1__py3-none-any.whl

fractal_server/__init__.py

@@ -1 +1 @@
-__VERSION__ = "2.12.0a0"
+__VERSION__ = "2.12.0a1"

fractal_server/app/runner/executors/slurm/ssh/executor.py

@@ -385,9 +385,7 @@ class FractalSlurmSSHExecutor(SlurmExecutor):
         args_batches = []
         batch_size = tasks_per_job
         for ind_chunk in range(0, tot_tasks, batch_size):
-            args_batches.append(
-                list_args[ind_chunk : ind_chunk + batch_size]  # noqa
-            )
+            args_batches.append(list_args[ind_chunk : ind_chunk + batch_size])
         if len(args_batches) != math.ceil(tot_tasks / tasks_per_job):
             raise RuntimeError("Something wrong here while batching tasks")
 
@@ -536,10 +534,15 @@ class FractalSlurmSSHExecutor(SlurmExecutor):
             _prefixes = []
             _subfolder_names = []
             for component in components:
-                if isinstance(component, dict):
+                # In Fractal, `component` is `dict` by construction (e.g.
+                # `component = {"zarr_url": "/something", "param": 1}``). The
+                # try/except covers the case of e.g. `executor.map([1, 2])`,
+                # which is useful for testing.
+                try:
                     actual_component = component.get(_COMPONENT_KEY_, None)
-                else:
-                    actual_component = component
+                except AttributeError:
+                    actual_component = str(component)
+
                 _task_file_paths = get_task_file_paths(
                     workflow_dir_local=task_files.workflow_dir_local,
                     workflow_dir_remote=task_files.workflow_dir_remote,

fractal_server/app/runner/executors/slurm/sudo/executor.py

@@ -608,11 +608,7 @@ class FractalSlurmExecutor(SlurmExecutor):
             _prefixes = []
             _subfolder_names = []
             for component in components:
-                if isinstance(component, dict):
-                    # This is needed for V2
-                    actual_component = component.get(_COMPONENT_KEY_, None)
-                else:
-                    actual_component = component
+                actual_component = component.get(_COMPONENT_KEY_, None)
                 _task_file_paths = get_task_file_paths(
                     workflow_dir_local=task_files.workflow_dir_local,
                     workflow_dir_remote=task_files.workflow_dir_remote,

fractal_server/app/schemas/_validators.py

@@ -48,25 +48,6 @@ def valdict_keys(attribute: str):
     return val
 
 
-def valint(attribute: str, min_val: int = 1):
-    """
-    Check that an integer attribute (e.g. if it is meant to be the ID of a
-    database entry) is greater or equal to min_val.
-    """
-
-    def val(integer: Optional[int]) -> Optional[int]:
-        if integer is None:
-            raise ValueError(f"Integer attribute '{attribute}' cannot be None")
-        if integer < min_val:
-            raise ValueError(
-                f"Integer attribute '{attribute}' cannot be less than "
-                f"{min_val} (given {integer})"
-            )
-        return integer
-
-    return val
-
-
 def val_absolute_path(attribute: str, accept_none: bool = False):
     """
     Check that a string attribute is an absolute path

fractal_server/tasks/utils.py

@@ -7,9 +7,5 @@ COLLECTION_FREEZE_FILENAME = "collection_freeze.txt"
 FORBIDDEN_DEPENDENCY_STRINGS = ["github.com"]
 
 
-def get_collection_path(base: Path) -> Path:
-    return base / COLLECTION_FILENAME
-
-
 def get_log_path(base: Path) -> Path:
     return base / COLLECTION_LOG_FILENAME

{fractal_server-2.12.0a0.dist-info → fractal_server-2.12.0a1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: fractal-server
-Version: 2.12.0a0
+Version: 2.12.0a1
 Summary: Backend component of the Fractal analytics platform
 Home-page: https://github.com/fractal-analytics-platform/fractal-server
 License: BSD-3-Clause

{fractal_server-2.12.0a0.dist-info → fractal_server-2.12.0a1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-fractal_server/__init__.py,sha256=Wn8eJa03y-IsDDGndomL0oqMXnAho6QTuQcpQidSwcA,25
+fractal_server/__init__.py,sha256=gxqCoA1Q81Ojo5b58OAPQxwUtkX0nD4cBL1wD-a3TMg,25
 fractal_server/__main__.py,sha256=D2YTmSowmXNyvqOjW_HeItCZT2UliWlySl_owicaZg0,8026
 fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
 fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -68,12 +68,12 @@ fractal_server/app/runner/executors/slurm/remote.py,sha256=wLziIsGdSMiO-jIXM8x77
 fractal_server/app/runner/executors/slurm/ssh/__init__.py,sha256=Cjn1rYvljddi96tAwS-qqGkNfOcfPzjChdaEZEObCcM,65
 fractal_server/app/runner/executors/slurm/ssh/_executor_wait_thread.py,sha256=bKo5Ja0IGxJWpPWyh9dN0AG-PwzTDZzD5LyaEHB3YU4,3742
 fractal_server/app/runner/executors/slurm/ssh/_slurm_job.py,sha256=rwlqZzoGo4SAb4nSlFjsQJdaCgfM1J6YGcjb8yYxlqc,4506
-fractal_server/app/runner/executors/slurm/ssh/executor.py,sha256=gtjXKTY0cP3h5AtTXRZChtFOP-tbJTBmvxs_6VnEWao,54082
+fractal_server/app/runner/executors/slurm/ssh/executor.py,sha256=oqXssvcjBiTYxkud-WVQQuQiAKOiBYumz6piFSY5jNg,54316
 fractal_server/app/runner/executors/slurm/sudo/__init__.py,sha256=Cjn1rYvljddi96tAwS-qqGkNfOcfPzjChdaEZEObCcM,65
 fractal_server/app/runner/executors/slurm/sudo/_check_jobs_status.py,sha256=wAgwpVcr6JIslKHOuS0FhRa_6T1KCManyRJqA-fifzw,1909
 fractal_server/app/runner/executors/slurm/sudo/_executor_wait_thread.py,sha256=uRRyVHQtK9McHCB6OsjYfDnQsu2E8At9K_UYb_pe2pg,4682
 fractal_server/app/runner/executors/slurm/sudo/_subprocess_run_as_user.py,sha256=g8wqUjSicN17UZVXlfaMomYZ-xOIbBu1oE7HdJTzfvw,5218
-fractal_server/app/runner/executors/slurm/sudo/executor.py,sha256=FVgx2mxqCLOhSoH3UTAeNc0BT0eJaxHMglGzGYePGPM,47439
+fractal_server/app/runner/executors/slurm/sudo/executor.py,sha256=z3_VKolY472GQ9mPr1MipQfRIbjt3XW-X13q-x0gAnE,47272
 fractal_server/app/runner/executors/slurm/utils_executors.py,sha256=naPyJI0I3lD-sYHbSXbMFGUBK4h_SggA5V91Z1Ch1Xg,1416
 fractal_server/app/runner/extract_archive.py,sha256=tLpjDrX47OjTNhhoWvm6iNukg8KoieWyTb7ZfvE9eWU,2483
 fractal_server/app/runner/filenames.py,sha256=lPnxKHtdRizr6FqG3zOdjDPyWA7GoaJGTtiuJV0gA8E,70
@@ -106,7 +106,7 @@ fractal_server/app/runner/v2/task_interface.py,sha256=d6HPwPzrytUMVjExTU6fuCEwtv
 fractal_server/app/runner/versions.py,sha256=dSaPRWqmFPHjg20kTCHmi_dmGNcCETflDtDLronNanU,852
 fractal_server/app/schemas/__init__.py,sha256=stURAU_t3AOBaH0HSUbV-GKhlPKngnnIMoqWc3orFyI,135
 fractal_server/app/schemas/_filter_validators.py,sha256=0wJuZzMa-hJsMCEMxtBalW3lSk1Qey25uSVmS7GVcPM,1534
-fractal_server/app/schemas/_validators.py,sha256=3dotVxUHWKAmUO3aeoluYDLRKrw1OS-NxcZ4Fg_HOYk,3560
+fractal_server/app/schemas/_validators.py,sha256=wS09d8hX7mN91C8_BF9jfB8rgBbuAmmZ1BAmLKi3BU8,2974
 fractal_server/app/schemas/user.py,sha256=icjox9gK_invW44Nh_L4CvqfRa92qghyQhmevyg09nQ,2243
 fractal_server/app/schemas/user_group.py,sha256=t30Kd07PY43G_AqFDb8vjdInTeLeU9WvFZDx8fVLPSI,1750
 fractal_server/app/schemas/user_settings.py,sha256=re7ZFS8BLjR9MdIoZNRt2DNPc7znCgDpEYFKr8ZsAZg,2980
@@ -171,7 +171,7 @@ fractal_server/ssh/_fabric.py,sha256=lNy4IX1I4We6VoWa4Bz4fUPuApLMSoejpyE6I3jDZeM
 fractal_server/string_tools.py,sha256=niViRrrZAOo0y6pEFI9L_eUYS1PoOiQZUBtngiLc2_k,1877
 fractal_server/syringe.py,sha256=3qSMW3YaMKKnLdgnooAINOPxnCOxP7y2jeAQYB21Gdo,2786
 fractal_server/tasks/__init__.py,sha256=kadmVUoIghl8s190_Tt-8f-WBqMi8u8oU4Pvw39NHE8,23
-fractal_server/tasks/utils.py,sha256=iJcfOCU5FAOosj6yEWlHtnvF0PuvaQGGvgdFWbbycYo,376
+fractal_server/tasks/utils.py,sha256=V7dj8o2AnoHhGSTYlqJHcRFhCIpmOrMOUhtiE_DvRVA,291
 fractal_server/tasks/v2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 fractal_server/tasks/v2/local/__init__.py,sha256=9RVItnS7OyLsJOuJjWMCicaky4ASUPQEYD4SzDs0hOE,141
 fractal_server/tasks/v2/local/_utils.py,sha256=EvhmVwYjqaNyDCUMEsTWYOUXLgEwR1xr6bu32apCEI8,2491
@@ -197,8 +197,8 @@ fractal_server/tasks/v2/utils_templates.py,sha256=07TZpJ0Mh_A4lXVXrrH2o1VLFFGwxe
 fractal_server/urls.py,sha256=QjIKAC1a46bCdiPMu3AlpgFbcv6a4l3ABcd5xz190Og,471
 fractal_server/utils.py,sha256=PMwrxWFxRTQRl1b9h-NRIbFGPKqpH_hXnkAT3NfZdpY,3571
 fractal_server/zip_tools.py,sha256=GjDgo_sf6V_DDg6wWeBlZu5zypIxycn_l257p_YVKGc,4876
-fractal_server-2.12.0a0.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
-fractal_server-2.12.0a0.dist-info/METADATA,sha256=LghysLw-HvU3qdWps85YpkIfYdEYWBMcl0Wc_JygZaQ,4564
-fractal_server-2.12.0a0.dist-info/WHEEL,sha256=RaoafKOydTQ7I_I3JTrPCg6kUmTgtm4BornzOqyEfJ8,88
-fractal_server-2.12.0a0.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
-fractal_server-2.12.0a0.dist-info/RECORD,,
+fractal_server-2.12.0a1.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
+fractal_server-2.12.0a1.dist-info/METADATA,sha256=toS3YbZbnMrVzQOHOFPN8c4uj3gEJbjSdagv3NbrfjA,4564
+fractal_server-2.12.0a1.dist-info/WHEEL,sha256=RaoafKOydTQ7I_I3JTrPCg6kUmTgtm4BornzOqyEfJ8,88
+fractal_server-2.12.0a1.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
+fractal_server-2.12.0a1.dist-info/RECORD,,