fractal-server 1.3.0a2__py3-none-any.whl → 1.3.0a3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (37) hide show
  1. fractal_server/__init__.py +1 -1
  2. fractal_server/app/api/v1/dataset.py +21 -0
  3. fractal_server/app/api/v1/task.py +78 -16
  4. fractal_server/app/api/v1/workflow.py +36 -25
  5. fractal_server/app/models/job.py +3 -2
  6. fractal_server/app/models/project.py +4 -3
  7. fractal_server/app/models/security.py +2 -0
  8. fractal_server/app/models/state.py +2 -1
  9. fractal_server/app/models/task.py +20 -9
  10. fractal_server/app/models/workflow.py +34 -29
  11. fractal_server/app/runner/_common.py +13 -12
  12. fractal_server/app/runner/_slurm/executor.py +2 -1
  13. fractal_server/common/requirements.txt +1 -1
  14. fractal_server/common/schemas/__init__.py +2 -0
  15. fractal_server/common/schemas/applyworkflow.py +6 -7
  16. fractal_server/common/schemas/manifest.py +32 -15
  17. fractal_server/common/schemas/project.py +8 -10
  18. fractal_server/common/schemas/state.py +3 -4
  19. fractal_server/common/schemas/task.py +28 -97
  20. fractal_server/common/schemas/task_collection.py +101 -0
  21. fractal_server/common/schemas/user.py +5 -0
  22. fractal_server/common/schemas/workflow.py +9 -11
  23. fractal_server/common/tests/test_manifest.py +36 -4
  24. fractal_server/common/tests/test_task.py +16 -0
  25. fractal_server/common/tests/test_task_collection.py +24 -0
  26. fractal_server/common/tests/test_user.py +12 -0
  27. fractal_server/main.py +3 -0
  28. fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py +38 -0
  29. fractal_server/migrations/versions/{e8f4051440be_new_initial_schema.py → 50a13d6138fd_initial_schema.py} +18 -10
  30. fractal_server/migrations/versions/{fda995215ae9_drop_applyworkflow_overwrite_input.py → f384e1c0cf5d_drop_task_default_args_columns.py} +9 -10
  31. fractal_server/tasks/collection.py +180 -115
  32. {fractal_server-1.3.0a2.dist-info → fractal_server-1.3.0a3.dist-info}/METADATA +2 -1
  33. {fractal_server-1.3.0a2.dist-info → fractal_server-1.3.0a3.dist-info}/RECORD +36 -34
  34. {fractal_server-1.3.0a2.dist-info → fractal_server-1.3.0a3.dist-info}/WHEEL +1 -1
  35. fractal_server/migrations/versions/bb1cca2acc40_add_applyworkflow_end_timestamp.py +0 -31
  36. {fractal_server-1.3.0a2.dist-info → fractal_server-1.3.0a3.dist-info}/LICENSE +0 -0
  37. {fractal_server-1.3.0a2.dist-info → fractal_server-1.3.0a3.dist-info}/entry_points.txt +0 -0
@@ -1,28 +1,28 @@
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  fractal_server/.gitignore,sha256=9swdobOQ_Celjt2OgRUpy9oEpNqTBn-1NRUFfJU4rps,69
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- fractal_server/__init__.py,sha256=D3Ls20HR2AmTo9L2JxoBQx3aVxeR8tK0zTv_uUNj2ko,24
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+ fractal_server/__init__.py,sha256=csAa0jC5SNpQzyNl4S59D-bh9OqWG0ByJfw_I4XbkqE,24
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  fractal_server/__main__.py,sha256=znijcImbcEC4P26ICOhEJ9VY3_5vWdMwQcl-WP25sYA,2202
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  fractal_server/alembic.ini,sha256=MWwi7GzjzawI9cCAK1LW7NxIBQDUqD12-ptJoq5JpP0,3153
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  fractal_server/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  fractal_server/app/api/__init__.py,sha256=ahaPOVieeOY6CDiPSRkV9fMeI44fziX5WkZNoCk4pno,952
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  fractal_server/app/api/v1/__init__.py,sha256=2HMymr1YkUk39V8iof7KENyLnre4ghouOSvNZ_kF1ec,24
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  fractal_server/app/api/v1/_aux_functions.py,sha256=WIBw7KOFpiBc0QTO3Rz0R_kJzpdGx-LkYTTRbIMnMq4,6314
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- fractal_server/app/api/v1/dataset.py,sha256=VGWkDRHbAAnzYkRyWdvZQ5KZ3DAMs4a0CXZmI1YO1Uc,6974
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+ fractal_server/app/api/v1/dataset.py,sha256=lYmJBuSiGFH3by7di_OlK8_Zv1QldZaIQccF9lvSfCs,7624
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  fractal_server/app/api/v1/job.py,sha256=Q_txGDZ-_Mtnaie4LobRblUx6RRLk_ogWn4jbk1Kehc,4817
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  fractal_server/app/api/v1/project.py,sha256=lnoh0FU3diYicQeqLnAZlyGhZQ6RsFvWBgaSvJdrhYA,8880
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- fractal_server/app/api/v1/task.py,sha256=n3BLoJe2kf1gp_zK7BRIc3C4Z12Odg6wy6h4EJ7q_5k,12661
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- fractal_server/app/api/v1/workflow.py,sha256=vVmwbHBvZjMiQvbbrjCiOoWu8BPK-ZLI3G78wA_uM-w,12202
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+ fractal_server/app/api/v1/task.py,sha256=amqnYBXuiEknN-8gtbQ2ubIHLt99aUDMhJqmhyPrHkg,15343
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+ fractal_server/app/api/v1/workflow.py,sha256=RwHrZYls433n493n8_X2hdtQ5lgNnkU3H4pSZFt_de4,12501
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  fractal_server/app/db/__init__.py,sha256=yrgST0p9RKI-hpNDPshbSrPxk6KSEr2YAyKzwcFTMhk,3081
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- fractal_server/app/models/job.py,sha256=CAF7DsvM7J5AFlxQMG0SjFTGR_wMloKvfJJLiRywsjg,3370
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+ fractal_server/app/models/job.py,sha256=db1o_Jrd4mB3Xq_TYlq25EW0WDqx95aTsbwk1B_N87E,3412
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  fractal_server/app/models/linkuserproject.py,sha256=RVtl25Q_N99uoVDE7wx0IN0SgFjc7Id5XbScsgrjv_E,309
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- fractal_server/app/models/project.py,sha256=vRnSSsglMauKeBIpxkT3587S9YOoxPbW6AE2NzRriZg,2295
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- fractal_server/app/models/security.py,sha256=agTLokd7E4gGOSPy_dYQYrzYNIQ44LfEUNULLp_lZ2o,2534
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- fractal_server/app/models/state.py,sha256=uVMwkpalARAni7DNbOQ44v9LikRHJqR7MWlsGyzoAZ8,1079
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- fractal_server/app/models/task.py,sha256=3lTZMmHcQK0CgWLjcceyOANdqRt-89n1_z1AMEL2L2Q,1080
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- fractal_server/app/models/workflow.py,sha256=-h4DyPknE_oKfE9ksI3rOG0cTfGCk3iQnrWLfZ9oePM,5464
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+ fractal_server/app/models/project.py,sha256=KojpE9j6aKxUVP5jsc0gcSekT1aE5WRcLanI9KX0Nt4,2355
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+ fractal_server/app/models/security.py,sha256=wrue4eUgKHtj_nDmreoJSDf1rJo7oDNLHvwE3G7MBP8,2563
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+ fractal_server/app/models/state.py,sha256=80IeVsju9DPwEzuW2Pw_JdZvnFa2RRQHCsLcBb32ZRE,1119
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+ fractal_server/app/models/task.py,sha256=4YxSY6BXaJezlQNJDSIaiXPkyoN3fJJIzwOZpjH2Aw4,1591
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+ fractal_server/app/models/workflow.py,sha256=JUu8LJofJzbtfPcnWxT5qF_xn5kRxdW3ka6QvoiFkBQ,5948
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- fractal_server/app/runner/_common.py,sha256=OT2wIANjCTGLRTOdHrR4rGjXgmU8XsEUk7iap3upXyg,19458
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+ fractal_server/app/runner/_common.py,sha256=8Mk3rif-KN6_RYZrBiiTTEeYMcX1WFzXeX5vx33t91c,19523
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@@ -34,7 +34,7 @@ fractal_server/app/runner/_slurm/_executor_wait_thread.py,sha256=GRDSDHz4wvYBMNT
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  fractal_server/app/runner/_slurm/_subprocess_run_as_user.py,sha256=k7JWKJ5oSM-WEPcRRv9kLEPXKMbXceef5alT8iyTKUg,4534
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- fractal_server/app/runner/_slurm/executor.py,sha256=6rPlzA6JY91maTzB_vM-2lKYTmnZw6IeNwFTS_k4Eak,42127
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+ fractal_server/app/runner/_slurm/executor.py,sha256=zpgY9uSdlUmcrr53zFSHJo8algxzjR8IPbrOj5SVndI,42200
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@@ -45,41 +45,43 @@ fractal_server/common/.gitignore,sha256=NBuYvX-LQLfkxvn7-9Rs_Hrwv-KQNVV5FMddadDe
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- fractal_server/common/schemas/__init__.py,sha256=ivgMxDl48SsTSSURURpc69YVKirNiCfVFQTqxnt0jQk,525
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+ fractal_server/common/requirements.txt,sha256=DuDd8APW8rR4M90c4qkn5GmScoL8an3O6XVYEe8CZME,57
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+ fractal_server/common/schemas/__init__.py,sha256=U2gAT9IsDxWNodOwglsRMyerVdkjE4jcEW2XzAdEwIs,614
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- fractal_server/common/schemas/applyworkflow.py,sha256=C5rRqx_KzSNX_b5wBlTZNWa-GBwl9sSPzzi76Cu7qdo,1135
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- fractal_server/common/schemas/manifest.py,sha256=Er3rP7z7XaUE810w0NicMLN2kGC8o-CvcIrs30qRl9A,2817
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- fractal_server/common/schemas/project.py,sha256=vnFu56GlIFYbUYJG09ZhIairxXdv06zfC_SyCDjTmPM,2527
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- fractal_server/common/schemas/state.py,sha256=rdZmh2UpibELUMoXtGkG1zfLG4gRnaiv9fvkoKmYGx0,695
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- fractal_server/common/schemas/task.py,sha256=FN06OZojgK8kNY4ZlO08AHc3tMwhvtpLEbdcYWIPmZ0,4323
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- fractal_server/common/schemas/user.py,sha256=qJIjpvS6fDcwgYORnTYRJykFT9uq_U3SDSmDkdGhlhw,980
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- fractal_server/common/schemas/workflow.py,sha256=4g4vXCYk-Wz_Z0CXhIb4kPwBDQp3YRJyYu-x-7lyGEc,2502
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+ fractal_server/common/schemas/applyworkflow.py,sha256=O7e4MqoRWkzO6goj8SBqxNnasCq5DnrjNFBfouSKLnI,1117
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+ fractal_server/common/schemas/manifest.py,sha256=XN--J82S9YxGk22KFvg3X6mPAInWGBA1CV4zeWmlfKM,3479
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+ fractal_server/common/schemas/project.py,sha256=mcOMA_26jeeEpS_pCQPYxnIh9ikzQe4gyTFGmtZ-tF0,2483
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+ fractal_server/common/schemas/state.py,sha256=UPCZF5jlZCWzIkCOuDFSQN9tqp2EHb5Nc-WxTg4tC2I,673
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+ fractal_server/common/schemas/task.py,sha256=PQ8CvD2NRF8QFsU2AEyhqsFI-B5MjJepqz5uhoK6YA4,2578
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+ fractal_server/common/schemas/task_collection.py,sha256=8J0YeNAWtScKS2V_wJTmmbBro55wMhqcsG5wPDS57wE,2741
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+ fractal_server/common/schemas/user.py,sha256=MXsUCRrqI-6IUyCHBoRc7TRkn3wdARZdgeRgP0U9R-8,1216
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+ fractal_server/common/schemas/workflow.py,sha256=XRJZRkmTFyFwwHBQhfbmCCckxNJ0Lj_VhVPz0Y0jw88,2457
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- fractal_server/migrations/versions/e8f4051440be_new_initial_schema.py,sha256=13wafl_ntgq1r1aUTR7BAPENe8vFR8Rie0GhXr_n6xw,8438
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+ fractal_server/migrations/versions/4c308bcaea2b_add_task_args_schema_and_task_args_.py,sha256=b2fdv2aEPjrFDZQdrxjxO07Ri10IOSGo3UBx76SdGNg,954
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- fractal_server-1.3.0a2.dist-info/METADATA,sha256=IOgH-Q3pWWkkP3gONCpBFzOrOawtE5QpzGHESG4Zjfo,3596
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- fractal_server-1.3.0a2.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
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- fractal_server-1.3.0a2.dist-info/RECORD,,
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+ fractal_server-1.3.0a3.dist-info/LICENSE,sha256=QKAharUuhxL58kSoLizKJeZE3mTCBnX6ucmz8W0lxlk,1576
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+ fractal_server-1.3.0a3.dist-info/METADATA,sha256=aRDvLSA-bFAl3mM0CGKrrnVdo531_Jt2vTzMVpY6xtQ,3631
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+ fractal_server-1.3.0a3.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
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+ fractal_server-1.3.0a3.dist-info/entry_points.txt,sha256=8tV2kynvFkjnhbtDnxAqImL6HMVKsopgGfew0DOp5UY,58
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@@ -1,4 +1,4 @@
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  Wheel-Version: 1.0
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- Generator: poetry-core 1.4.0
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+ Generator: poetry-core 1.6.1
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@@ -1,31 +0,0 @@
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- """add ApplyWorkflow.end_timestamp
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-
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- Revision ID: bb1cca2acc40
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- Revises: fda995215ae9
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- Create Date: 2023-05-12 10:15:50.102921
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-
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- """
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- import sqlalchemy as sa
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- from alembic import op
10
-
11
-
12
- # revision identifiers, used by Alembic.
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- revision = "bb1cca2acc40"
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- down_revision = "fda995215ae9"
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- branch_labels = None
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- depends_on = None
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-
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-
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- def upgrade() -> None:
20
- # ### commands auto generated by Alembic - please adjust! ###
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- op.add_column(
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- "applyworkflow",
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- sa.Column("end_timestamp", sa.DateTime(timezone=True), nullable=True),
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- )
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- # ### end Alembic commands ###
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-
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-
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- def downgrade() -> None:
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- # ### commands auto generated by Alembic - please adjust! ###
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- op.drop_column("applyworkflow", "end_timestamp")
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- # ### end Alembic commands ###