fountain-life-service-clients 3.40.0__py3-none-any.whl → 3.42.0__py3-none-any.whl

fountain_life_service_clients/genomic_ingestion_service.py

@@ -0,0 +1,30 @@
+# This file was generated automatically. Do not edit it directly.
+from typing import TypedDict, Unpack, cast
+from urllib.parse import quote
+
+from fountain_life_service_clients._base_client import (
+    AlphaConfig,
+    AlphaResponse,
+    BaseClient,
+)
+
+
+class GetBroadInfoByGenomicsFileIdResponse(TypedDict):
+    orderId: str
+    sampleId: str
+
+
+class GenomicIngestionServiceClient(BaseClient):
+    def __init__(self, **cfg: Unpack[AlphaConfig]):
+        kwargs = {
+            "target": "lambda://genomic-ingestion-service:deployed",
+            **(cfg or {}),
+        }
+        super().__init__(**kwargs)
+
+    async def get_broad_info_by_genomics_file_id(self, file_id: str):
+        """Provide any genomics file id related to a patients broad genomic ingestion and get info to the originating Broad order"""
+        res = await self.client.request(
+            path=f"/v1/genomic-ingestion/broad/order/{quote(file_id)}", method="GET"
+        )
+        return cast(AlphaResponse[GetBroadInfoByGenomicsFileIdResponse], res)

fountain_life_service_clients/genomics_service.py

@@ -9,6 +9,7 @@ from typing import (
     Unpack,
     cast,
 )
+from urllib.parse import quote
 
 from fountain_life_service_clients._base_client import (
     AlphaConfig,
@@ -145,6 +146,36 @@ class SearchVariantsResponse(TypedDict):
     invalid: NotRequired[Invalid]
 
 
+class Set(TypedDict):
+    id: str
+    fileId: NotRequired[str]
+    sequenceId: NotRequired[str]
+    name: NotRequired[str]
+    setType: NotRequired[str]
+    status: NotRequired[str]
+    sequenceType: NotRequired[str]
+
+
+class item(TypedDict):
+    id: str
+    datasetId: NotRequired[str]
+    name: NotRequired[str]
+    patientId: NotRequired[str]
+    reportFileId: NotRequired[str]
+    indexedDate: NotRequired[str]
+    testType: NotRequired[str]
+    referenceSetId: NotRequired[str]
+    sourceFileId: NotRequired[str]
+    ingestFileId: NotRequired[str]
+    status: NotRequired[str]
+    createdDate: NotRequired[str]
+    sets: List[Set]
+
+
+class GetSubjectTestsResponse(TypedDict):
+    items: List[item]
+
+
 class GenomicsServiceClient(BaseClient):
     def __init__(self, **cfg: Unpack[AlphaConfig]):
         kwargs = {"target": "lambda://genomics-service:deployed", **(cfg or {})}
@@ -156,3 +187,11 @@ class GenomicsServiceClient(BaseClient):
             path="/v1/genomics/variants/_search", method="POST", body=cast(dict, body)
         )
         return cast(AlphaResponse[SearchVariantsResponse], res)
+
+    async def get_subject_tests(self, project_id: str, subject_id: str):
+        """Get subject tests"""
+        res = await self.client.request(
+            path=f"/v1/genomics/projects/{quote(project_id)}/subjects/{quote(subject_id)}/tests",
+            method="GET",
+        )
+        return cast(AlphaResponse[GetSubjectTestsResponse], res)

{fountain_life_service_clients-3.40.0.dist-info → fountain_life_service_clients-3.42.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: fountain-life-service-clients
-Version: 3.40.0
+Version: 3.42.0
 Summary: 
 License: UNLICENSED
 Author: Fountain Life

{fountain_life_service_clients-3.40.0.dist-info → fountain_life_service_clients-3.42.0.dist-info}/RECORD

@@ -14,8 +14,9 @@ fountain_life_service_clients/fhir_post_processor_service.py,sha256=4IsyyRoCIzSN
 fountain_life_service_clients/fhir_search_service.py,sha256=O_y8YrOjvKj_Tfs5Pj4MM4X6RvV1E2s762lRH5U8ji8,6014
 fountain_life_service_clients/file_service.py,sha256=CY36fpvCAi17npAKAWkFDDaNhwbvTC5hx-sGZmPfyBM,4046
 fountain_life_service_clients/ga4gh_service.py,sha256=SSFdYM_oW2ZATUOaZT_xjp3jlEJt7rR_ai2US6HolgI,989
+fountain_life_service_clients/genomic_ingestion_service.py,sha256=rQ9lv2ezCjMxgc8P4jYl3xNeSV6DwZOQOLg_Fe2u9PE,1025
 fountain_life_service_clients/genomics_report_service.py,sha256=d2w16pZ3ZaakX0pYkidWT7buY-RB_GRzLf0R6lbIvw0,993
-fountain_life_service_clients/genomics_service.py,sha256=Xx5rhgzjEJfdNA_g0Je4xDo26NKZQiIuNC88cUI-v-s,4225
+fountain_life_service_clients/genomics_service.py,sha256=p6fvhf6i3FJVXnLDAFNJgS2IVTYjbkSNX-osy-rRYjo,5305
 fountain_life_service_clients/invitation_service.py,sha256=tKWgb-bGIwT4x3MWSLiVChQRaZURj43S6Uyrg3Lt7HA,2596
 fountain_life_service_clients/medical_results_service_results.py,sha256=L0clTifU4LWWKgBsIzEfelmkaICxG1_q8sHyrdA5es4,4876
 fountain_life_service_clients/member_notification_service.py,sha256=wRkgmUqAV59BV81c3Iwz7JxSTuOLagHrcJcXvMbdBco,1814
@@ -27,6 +28,6 @@ fountain_life_service_clients/rules_service.py,sha256=VxPYboYQmw--6Kn78RKu6_9as1
 fountain_life_service_clients/scheduler_service.py,sha256=IkwRns_QHh6fx1IZWEXZ35DeRiW7OHaROM5wjWubZm4,4440
 fountain_life_service_clients/survey_service.py,sha256=RPpPBhXqmvYZ-T4n1BFX9TUSAfnnjfVcUo3k76a91PQ,14206
 fountain_life_service_clients/user_service.py,sha256=rM9xcF-VzdLp9aDOhg1UbecX2VPPMxH9PlgpNpGdC18,4253
-fountain_life_service_clients-3.40.0.dist-info/METADATA,sha256=WertbNkjZNj4BvxauFze9QJDcB2-vGvRbE77vWFCfpY,1405
-fountain_life_service_clients-3.40.0.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
-fountain_life_service_clients-3.40.0.dist-info/RECORD,,
+fountain_life_service_clients-3.42.0.dist-info/METADATA,sha256=dojuCCsN5-4obmg-6BgBhdeyy6288zYUSJlkfdI1trk,1405
+fountain_life_service_clients-3.42.0.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
+fountain_life_service_clients-3.42.0.dist-info/RECORD,,