fountain-life-service-clients 3.34.2__py3-none-any.whl → 3.35.0__py3-none-any.whl

fountain_life_service_clients/ga4gh_service.py

@@ -0,0 +1,34 @@
+# This file was generated automatically. Do not edit it directly.
+from typing import List, NotRequired, TypedDict, Unpack, cast
+from urllib.parse import quote
+
+from fountain_life_service_clients._base_client import (
+    AlphaConfig,
+    AlphaResponse,
+    BaseClient,
+)
+
+
+class Sample(TypedDict):
+    sampleId: str
+    patientId: NotRequired[str]
+
+
+class GetVariantSetResponse(TypedDict):
+    id: str
+    datasetId: str
+    patientId: NotRequired[str]
+    samples: NotRequired[List[Sample]]
+
+
+class Ga4ghServiceClient(BaseClient):
+    def __init__(self, **cfg: Unpack[AlphaConfig]):
+        kwargs = {"target": "lambda://ga4gh-service:deployed", **(cfg or {})}
+        super().__init__(**kwargs)
+
+    async def get_variant_set(self, account: str, id: str):
+        """Get a variant set by id"""
+        res = await self.client.request(
+            path=f"/{quote(account)}/v1/variantsets/{quote(id)}", method="GET"
+        )
+        return cast(AlphaResponse[GetVariantSetResponse], res)

fountain_life_service_clients/genomics_service.py

@@ -9,7 +9,6 @@ from typing import (
     Unpack,
     cast,
 )
-from urllib.parse import quote
 
 from fountain_life_service_clients._base_client import (
     AlphaConfig,
@@ -17,19 +16,6 @@ from fountain_life_service_clients._base_client import (
     BaseClient,
 )
 
-
-class Sample(TypedDict):
-    sampleId: str
-    patientId: NotRequired[str]
-
-
-class GetVariantSetResponse(TypedDict):
-    id: str
-    datasetId: str
-    patientId: NotRequired[str]
-    samples: NotRequired[List[Sample]]
-
-
 SearchVariantsRequest = TypedDict(
     "SearchVariantsRequest",
     {
@@ -212,13 +198,6 @@ class GenomicsServiceClient(BaseClient):
         kwargs = {"target": "lambda://genomics-service:deployed", **(cfg or {})}
         super().__init__(**kwargs)
 
-    async def get_variant_set(self, id: str):
-        """Get a variant set by id"""
-        res = await self.client.request(
-            path=f"/v1/genomics/variantsets/{quote(id)}", method="GET"
-        )
-        return cast(AlphaResponse[GetVariantSetResponse], res)
-
     async def search_variants(self, body: SearchVariantsRequest):
         """Search for variants"""
         res = await self.client.request(

{fountain_life_service_clients-3.34.2.dist-info → fountain_life_service_clients-3.35.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: fountain-life-service-clients
-Version: 3.34.2
+Version: 3.35.0
 Summary: 
 License: UNLICENSED
 Author: Fountain Life

{fountain_life_service_clients-3.34.2.dist-info → fountain_life_service_clients-3.35.0.dist-info}/RECORD

@@ -13,7 +13,8 @@ fountain_life_service_clients/email_service_sms.py,sha256=6W9Ba0Qj8oRtPMOrMx2HPk
 fountain_life_service_clients/fhir_post_processor_service.py,sha256=4IsyyRoCIzSNIBMvJFi1QyFuekikmtoY7ahQCh8Oncw,1355
 fountain_life_service_clients/fhir_search_service.py,sha256=O_y8YrOjvKj_Tfs5Pj4MM4X6RvV1E2s762lRH5U8ji8,6014
 fountain_life_service_clients/file_service.py,sha256=CY36fpvCAi17npAKAWkFDDaNhwbvTC5hx-sGZmPfyBM,4046
-fountain_life_service_clients/genomics_service.py,sha256=folZvWiDFZltWqcle_4Ch-b_cg53Sw36oSjeeXZSkdY,8041
+fountain_life_service_clients/ga4gh_service.py,sha256=SSFdYM_oW2ZATUOaZT_xjp3jlEJt7rR_ai2US6HolgI,989
+fountain_life_service_clients/genomics_service.py,sha256=twqjv2jTHmetJCwQou1HKS-etXt1NpKctZnIt5q1uXY,7518
 fountain_life_service_clients/invitation_service.py,sha256=tKWgb-bGIwT4x3MWSLiVChQRaZURj43S6Uyrg3Lt7HA,2596
 fountain_life_service_clients/medical_results_service_results.py,sha256=L0clTifU4LWWKgBsIzEfelmkaICxG1_q8sHyrdA5es4,4876
 fountain_life_service_clients/member_notification_service.py,sha256=wRkgmUqAV59BV81c3Iwz7JxSTuOLagHrcJcXvMbdBco,1814
@@ -25,6 +26,6 @@ fountain_life_service_clients/rules_service.py,sha256=VxPYboYQmw--6Kn78RKu6_9as1
 fountain_life_service_clients/scheduler_service.py,sha256=IkwRns_QHh6fx1IZWEXZ35DeRiW7OHaROM5wjWubZm4,4440
 fountain_life_service_clients/survey_service.py,sha256=hxOl3gBDxEdjrsKcMCoPl9RxumQzRT-e4zTbEAA0Iq4,13343
 fountain_life_service_clients/user_service.py,sha256=rM9xcF-VzdLp9aDOhg1UbecX2VPPMxH9PlgpNpGdC18,4253
-fountain_life_service_clients-3.34.2.dist-info/METADATA,sha256=oaAiqWtnGu8Wh0Fl24HXsssry0-e7DThMvSWevjpqH0,1405
-fountain_life_service_clients-3.34.2.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
-fountain_life_service_clients-3.34.2.dist-info/RECORD,,
+fountain_life_service_clients-3.35.0.dist-info/METADATA,sha256=iCksGOa4Y6VFdqmnDyRZQInv8UfNtERocP278IwaBRQ,1405
+fountain_life_service_clients-3.35.0.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
+fountain_life_service_clients-3.35.0.dist-info/RECORD,,