flyte 0.2.0b1__py3-none-any.whl → 2.0.0b46__py3-none-any.whl

flyte/io/{structured_dataset → _dataframe}/basic_dfs.py

@@ -3,18 +3,18 @@ import typing
 from pathlib import Path
 from typing import TypeVar
 
-from flyteidl.core import literals_pb2, types_pb2
+from flyteidl2.core import literals_pb2, types_pb2
 from fsspec.core import split_protocol, strip_protocol
 
 import flyte.storage as storage
 from flyte._logging import logger
 from flyte._utils import lazy_module
-from flyte.io.structured_dataset.structured_dataset import (
+from flyte.io._dataframe.dataframe import (
     CSV,
     PARQUET,
-    StructuredDataset,
-    StructuredDatasetDecoder,
-    StructuredDatasetEncoder,
+    DataFrame,
+    DataFrameDecoder,
+    DataFrameEncoder,
 )
 
 if typing.TYPE_CHECKING:
@@ -27,58 +27,51 @@ else:
 T = TypeVar("T")
 
 
-# pr: add back after storage
-def get_pandas_storage_options(uri: str, data_config=None, anonymous: bool = False) -> typing.Optional[typing.Dict]:
+def get_pandas_storage_options(uri: str, anonymous: bool = False) -> typing.Optional[typing.Dict]:
     from pandas.io.common import is_fsspec_url  # type: ignore
 
     if is_fsspec_url(uri):
         if uri.startswith("s3"):
-            # pr: after storage, replace with real call to get_fsspec_storage_options
-            return {
-                "cache_regions": True,
-                "client_kwargs": {"endpoint_url": "http://localhost:30002"},
-                "key": "minio",
-                "secret": "miniostorage",
-            }
+            return storage.get_configured_fsspec_kwargs("s3", anonymous=anonymous)
         return {}
 
     # Pandas does not allow storage_options for non-fsspec paths e.g. local.
     return None
 
 
-class PandasToCSVEncodingHandler(StructuredDatasetEncoder):
+class PandasToCSVEncodingHandler(DataFrameEncoder):
     def __init__(self):
         super().__init__(pd.DataFrame, None, CSV)
 
     async def encode(
         self,
-        structured_dataset: StructuredDataset,
+        dataframe: DataFrame,
         structured_dataset_type: types_pb2.StructuredDatasetType,
     ) -> literals_pb2.StructuredDataset:
-        if not structured_dataset.uri:
+        if not dataframe.uri:
             from flyte._context import internal_ctx
 
             ctx = internal_ctx()
             uri = ctx.raw_data.get_random_remote_path()
         else:
-            uri = typing.cast(str, structured_dataset.uri)
+            uri = typing.cast(str, dataframe.uri)
 
         if not storage.is_remote(uri):
             Path(uri).mkdir(parents=True, exist_ok=True)
-        path = os.path.join(uri, ".csv")
-        df = typing.cast(pd.DataFrame, structured_dataset.dataframe)
+        csv_file = storage.join(uri, "data.csv")
+        df = typing.cast(pd.DataFrame, dataframe.val)
         df.to_csv(
-            path,
+            csv_file,
             index=False,
-            storage_options=get_pandas_storage_options(uri=path, data_config=None),
+            storage_options=get_pandas_storage_options(uri=csv_file),
         )
         structured_dataset_type.format = CSV
         return literals_pb2.StructuredDataset(
-            uri=uri, metadata=literals_pb2.StructuredDatasetMetadata(structured_dataset_type)
+            uri=uri, metadata=literals_pb2.StructuredDatasetMetadata(structured_dataset_type=structured_dataset_type)
         )
 
 
-class CSVToPandasDecodingHandler(StructuredDatasetDecoder):
+class CSVToPandasDecodingHandler(DataFrameDecoder):
     def __init__(self):
         super().__init__(pd.DataFrame, None, CSV)
 
@@ -87,48 +80,58 @@ class CSVToPandasDecodingHandler(StructuredDatasetDecoder):
         proto_value: literals_pb2.StructuredDataset,
         current_task_metadata: literals_pb2.StructuredDatasetMetadata,
     ) -> "pd.DataFrame":
-        from botocore.exceptions import NoCredentialsError
-
         uri = proto_value.uri
         columns = None
-        kwargs = get_pandas_storage_options(uri=uri, data_config=None)
-        path = os.path.join(uri, ".csv")
+        kwargs = get_pandas_storage_options(uri=uri)
+        csv_file = storage.join(uri, "data.csv")
         if current_task_metadata.structured_dataset_type and current_task_metadata.structured_dataset_type.columns:
             columns = [c.name for c in current_task_metadata.structured_dataset_type.columns]
         try:
-            return pd.read_csv(path, usecols=columns, storage_options=kwargs)
-        except NoCredentialsError:
-            logger.debug("S3 source detected, attempting anonymous S3 access")
-            kwargs = get_pandas_storage_options(uri=uri, data_config=None, anonymous=True)
-            return pd.read_csv(path, usecols=columns, storage_options=kwargs)
-
-
-class PandasToParquetEncodingHandler(StructuredDatasetEncoder):
+            import io
+
+            # The pattern used here is a bit wonky because of obstore issues with csv, getting early eof error.
+            buf = io.BytesIO()
+            async for chunk in storage.get_stream(csv_file):
+                buf.write(chunk)
+            buf.seek(0)
+            df = pd.read_csv(buf)
+            return df
+
+        except Exception as exc:
+            if exc.__class__.__name__ == "NoCredentialsError":
+                logger.debug("S3 source detected, attempting anonymous S3 access")
+                kwargs = get_pandas_storage_options(uri=uri, anonymous=True)
+                return pd.read_csv(csv_file, usecols=columns, storage_options=kwargs)
+            else:
+                raise
+
+
+class PandasToParquetEncodingHandler(DataFrameEncoder):
     def __init__(self):
         super().__init__(pd.DataFrame, None, PARQUET)
 
     async def encode(
         self,
-        structured_dataset: StructuredDataset,
+        dataframe: DataFrame,
         structured_dataset_type: types_pb2.StructuredDatasetType,
     ) -> literals_pb2.StructuredDataset:
-        if not structured_dataset.uri:
+        if not dataframe.uri:
             from flyte._context import internal_ctx
 
             ctx = internal_ctx()
             uri = str(ctx.raw_data.get_random_remote_path())
         else:
-            uri = typing.cast(str, structured_dataset.uri)
+            uri = typing.cast(str, dataframe.uri)
 
         if not storage.is_remote(uri):
             Path(uri).mkdir(parents=True, exist_ok=True)
         path = os.path.join(uri, f"{0:05}")
-        df = typing.cast(pd.DataFrame, structured_dataset.dataframe)
+        df = typing.cast(pd.DataFrame, dataframe.val)
         df.to_parquet(
             path,
             coerce_timestamps="us",
             allow_truncated_timestamps=False,
-            storage_options=get_pandas_storage_options(uri=path, data_config=None),
+            storage_options=get_pandas_storage_options(uri=path),
         )
         structured_dataset_type.format = PARQUET
         return literals_pb2.StructuredDataset(
@@ -136,7 +139,7 @@ class PandasToParquetEncodingHandler(StructuredDatasetEncoder):
         )
 
 
-class ParquetToPandasDecodingHandler(StructuredDatasetDecoder):
+class ParquetToPandasDecodingHandler(DataFrameDecoder):
     def __init__(self):
         super().__init__(pd.DataFrame, None, PARQUET)
 
@@ -145,51 +148,53 @@ class ParquetToPandasDecodingHandler(StructuredDatasetDecoder):
         flyte_value: literals_pb2.StructuredDataset,
         current_task_metadata: literals_pb2.StructuredDatasetMetadata,
     ) -> "pd.DataFrame":
-        from botocore.exceptions import NoCredentialsError
-
         uri = flyte_value.uri
         columns = None
-        kwargs = get_pandas_storage_options(uri=uri, data_config=None)
+        kwargs = get_pandas_storage_options(uri=uri)
         if current_task_metadata.structured_dataset_type and current_task_metadata.structured_dataset_type.columns:
             columns = [c.name for c in current_task_metadata.structured_dataset_type.columns]
         try:
             return pd.read_parquet(uri, columns=columns, storage_options=kwargs)
-        except NoCredentialsError:
-            logger.debug("S3 source detected, attempting anonymous S3 access")
-            kwargs = get_pandas_storage_options(uri=uri, data_config=None, anonymous=True)
-            return pd.read_parquet(uri, columns=columns, storage_options=kwargs)
+        except Exception as exc:
+            if exc.__class__.__name__ == "NoCredentialsError":
+                logger.debug("S3 source detected, attempting anonymous S3 access")
+                kwargs = get_pandas_storage_options(uri=uri, anonymous=True)
+                return pd.read_parquet(uri, columns=columns, storage_options=kwargs)
+            else:
+                raise
 
 
-class ArrowToParquetEncodingHandler(StructuredDatasetEncoder):
+class ArrowToParquetEncodingHandler(DataFrameEncoder):
     def __init__(self):
         super().__init__(pa.Table, None, PARQUET)
 
     async def encode(
         self,
-        structured_dataset: StructuredDataset,
-        structured_dataset_type: types_pb2.StructuredDatasetType,
+        dataframe: DataFrame,
+        dataframe_type: types_pb2.StructuredDatasetType,
     ) -> literals_pb2.StructuredDataset:
         import pyarrow.parquet as pq
 
-        if not structured_dataset.uri:
+        if not dataframe.uri:
             from flyte._context import internal_ctx
 
             ctx = internal_ctx()
             uri = ctx.raw_data.get_random_remote_path()
         else:
-            uri = typing.cast(str, structured_dataset.uri)
+            uri = typing.cast(str, dataframe.uri)
 
         if not storage.is_remote(uri):
             Path(uri).mkdir(parents=True, exist_ok=True)
         path = os.path.join(uri, f"{0:05}")
         filesystem = storage.get_underlying_filesystem(path=path)
-        pq.write_table(structured_dataset.dataframe, strip_protocol(path), filesystem=filesystem)
+        pq.write_table(dataframe.val, strip_protocol(path), filesystem=filesystem)
         return literals_pb2.StructuredDataset(
-            uri=uri, metadata=literals_pb2.StructuredDatasetMetadata(structured_dataset_type)
+            uri=uri,
+            metadata=literals_pb2.StructuredDatasetMetadata(structured_dataset_type=dataframe_type),
         )
 
 
-class ParquetToArrowDecodingHandler(StructuredDatasetDecoder):
+class ParquetToArrowDecodingHandler(DataFrameDecoder):
     def __init__(self):
         super().__init__(pa.Table, None, PARQUET)
 
@@ -199,21 +204,23 @@ class ParquetToArrowDecodingHandler(StructuredDatasetDecoder):
         current_task_metadata: literals_pb2.StructuredDatasetMetadata,
     ) -> "pa.Table":
         import pyarrow.parquet as pq
-        from botocore.exceptions import NoCredentialsError
 
-        uri = proto_value.uri
-        if not storage.is_remote(uri):
-            Path(uri).parent.mkdir(parents=True, exist_ok=True)
-        _, path = split_protocol(uri)
+        path = proto_value.uri
+        if not storage.is_remote(path):
+            Path(path).parent.mkdir(parents=True, exist_ok=True)
+            _, path = split_protocol(path)
 
         columns = None
         if current_task_metadata.structured_dataset_type and current_task_metadata.structured_dataset_type.columns:
             columns = [c.name for c in current_task_metadata.structured_dataset_type.columns]
         try:
             return pq.read_table(path, columns=columns)
-        except NoCredentialsError as e:
-            logger.debug("S3 source detected, attempting anonymous S3 access")
-            fs = storage.get_underlying_filesystem(path=uri, anonymous=True)
-            if fs is not None:
-                return pq.read_table(path, filesystem=fs, columns=columns)
-            raise e
+        except Exception as exc:
+            if exc.__class__.__name__ == "NoCredentialsError":
+                logger.debug("S3 source detected, attempting anonymous S3 access")
+                fs = storage.get_underlying_filesystem(path=path, anonymous=True)
+                if fs is not None:
+                    return pq.read_table(path, filesystem=fs, columns=columns)
+                return None
+            else:
+                raise