fiqus 2024.7.0__py3-none-any.whl → 2024.12.0__py3-none-any.whl

fiqus/geom_generators/GeometryPancake3DUtils.py

@@ -0,0 +1,549 @@
+import math
+from enum import Enum
+from typing import List, Tuple, Dict
+
+import os
+import numpy as np
+import gmsh
+import copy
+
+import matplotlib.pyplot as plt
+from mpl_toolkits.mplot3d.art3d import Poly3DCollection
+
+from fiqus.parsers.ParserCOND import ParserCOND
+
+class direction(Enum):
+    """
+    A class to specify direction easily.
+    """
+
+    ccw = 0
+    cw = 1
+
+class coordinate(Enum):
+    """
+    A class to specify coordinate types easily.
+    """
+
+    rectangular = 0
+    cylindrical = 1
+    spherical = 2
+
+class point:
+    """
+    This is a class for creating points in GMSH. It supports rectangular and cylindrical
+    coordinates. Moreover, vector operations are supported.
+
+    :param r0: x, r, or r (default: 0.0)
+    :type r0: float, optional
+    :param r1: y, theta, or theta (default: 0.0)
+    :type r1: float, optional
+    :param r2: z, z, or phi (default: 0.0)
+    :type r2: float, optional
+    :param type: coordinate type (default: coordinate.rectangular)
+    :type type: coordinate, optional
+    """
+
+    def __init__(self, r0=0.0, r1=0.0, r2=0.0, type=coordinate.rectangular) -> None:
+
+        self.type = type  # Store 'type' as an instance attribute
+
+        if type is coordinate.rectangular:
+            self.x = r0
+            self.y = r1
+            self.z = r2
+
+            self.r = math.sqrt(self.x**2 + self.y**2)
+            self.theta = math.atan2(self.y, self.x)
+        elif type is coordinate.cylindrical:
+            self.r = r0
+            self.theta = r1
+            self.x = self.r * math.cos(self.theta)
+            self.y = self.r * math.sin(self.theta)
+            self.z = r2
+        elif type is coordinate.spherical:
+            raise ValueError("Spherical coordinates are not supported yet!")
+        else:
+            raise ValueError("Improper coordinate type value!")
+
+        self.tag = gmsh.model.occ.addPoint(self.x, self.y, self.z)
+
+    def __repr__(self):
+        """
+        Returns the string representation of the point.
+
+        :return: string representation of the point
+        :rtype: str
+        """
+        return "point(%r, %r, %r, %r)" % (self.x, self.y, self.z, self.type)
+
+    def __abs__(self):
+        """
+        Returns the magnitude of the point vector.
+
+        :return: the magnitude of the point vector
+        :rtype: float
+        """
+        return math.hypot(self.x, self.y, self.z)
+
+    def __add__(self, other):
+        """
+        Returns the summation of two point vectors.
+
+        :param other: point vector to be added
+        :type other: point
+        :return: the summation of two point vectors
+        :rtype: point
+        """
+        x = self.x + other.x
+        y = self.y + other.y
+        z = self.z + other.z
+        return point(x, y, z, coordinate.rectangular)
+
+    def __mul__(self, scalar):
+        """
+        Returns the product of a point vector and a scalar.
+
+        :param scalar: a scalar value
+        :type scalar: float
+        :return: point
+        :rtype: point
+        """
+        return point(
+            self.x * scalar,
+            self.y * scalar,
+            self.z * scalar,
+            coordinate.rectangular,
+        )
+
+
+
+class spiralCurve:
+    """
+    A class to create a spiral curves parallel to XY plane in GMSH. The curve is defined
+    by a spline and it is divided into sub-curves. Sub-curves are used because it makes
+    the geometry creation process easier.
+
+    :param innerRadius: inner radius
+    :type innerRadius: float
+    :param gap: gap after each turn
+    :type gap: float
+    :param turns: number of turns
+    :type turns: float
+    :param z: z coordinate
+    :type z: float
+    :param initialTheta: initial theta angle in radians
+    :type initialTheta: float
+    :param direction: direction of the spiral (default: direction.ccw)
+    :type direction: direction, optional
+    :param cutPlaneNormal: normal vector of the plane that will cut the spiral curve
+        (default: None)
+    :type cutPlaneNormal: tuple[float, float, float], optional
+    """
+
+    # If the number of points used per turn is n, then the number of sections per turn
+    # is n-1. They set the resolution of the spiral curve. It sets the limit of the
+    # precision of the float number of turns that can be used to create the spiral
+    # curve. The value below might be modified in Geometry.__init__ method.
+    sectionsPerTurn = 16
+
+    # There will be curvesPerTurn curve entities per turn. It will be effectively the
+    # number of volumes per turn in the end. The value below might be modified in
+    # Geometry.__init__ method.
+    curvesPerTurn = 2
+
+    def __init__(
+        self,
+        innerRadius,
+        gap,
+        turns,
+        z,
+        initialTheta,
+        transitionNotchAngle,
+        geo,
+        direction=direction.ccw, # TODO code this to understand cw direction
+        cutPlaneNormal=Tuple[float, float, float]
+    ) -> None:
+        spt = self.sectionsPerTurn  # just to make the code shorter
+        self.turnRes = 1 / spt  # turn resolution
+        cpt = self.curvesPerTurn  # just to make the code shorter
+        self.turns = turns
+        self.geo = geo
+        # =============================================================================
+        # GENERATING POINTS STARTS ====================================================
+        # =============================================================================
+        print('The theta is')
+        print(initialTheta)
+
+        print('This is the status of the cutPlane')
+        print(cutPlaneNormal)
+        # Calculate the coordinates of the points that define the spiral curve:
+        if direction is direction.ccw:
+            # If the spiral is counter-clockwise, the initial theta angle decreases,
+            # and r increases as the theta angle decreases.
+            multiplier = 1
+        elif direction is direction.cw:
+            # If the spiral is clockwise, the initial theta angle increases, and r
+            # increases as the theta angle increases.
+            multiplier = -1
+
+        NofPointsPerTurn = int(spt + 1)
+        thetaArrays = []
+        for turn in range(1, int(self.turns) + 1):
+            thetaArrays.append(
+                np.linspace(
+                    initialTheta + (turn - 1) * 2 * math.pi * multiplier,
+                    initialTheta + (turn) * 2 * math.pi * multiplier,
+                    NofPointsPerTurn,
+                )
+            )
+
+        thetaArrays.append(
+            np.linspace(
+                initialTheta + (turn) * 2 * math.pi * multiplier,
+                initialTheta + (self.turns) * 2 * math.pi * multiplier,
+                round(spt * (self.turns - turn) + 1),
+            )
+        )
+
+        if cutPlaneNormal is not None:
+            # If the cutPlaneNormal is specified, the spiral curve will be cut by a
+            # plane that is normal to the cutPlaneNormal vector and passes through the
+            # origin.
+
+            alpha = math.atan2(cutPlaneNormal[1], cutPlaneNormal[0]) - math.pi / 2
+            alpha2 = alpha + math.pi
+
+            listOfBreakPoints = []
+            for turn in range(1, int(self.turns) + 2):
+                breakPoint1 = alpha + (turn - 1) * 2 * math.pi * multiplier
+                breakPoint2 = alpha2 + (turn - 1) * 2 * math.pi * multiplier
+                if (
+                    breakPoint1 > initialTheta
+                    and breakPoint1 < initialTheta + 2 * math.pi * self.turns
+                ):
+                    listOfBreakPoints.append(breakPoint1)
+                if (
+                    breakPoint2 > initialTheta
+                    and breakPoint2 < initialTheta + 2 * math.pi * self.turns
+                ):
+                    listOfBreakPoints.append(breakPoint2)
+
+            thetaArrays.append(np.array(listOfBreakPoints))
+
+        theta = np.concatenate(thetaArrays)
+        theta = np.round(theta, 10)
+        theta = np.unique(theta)
+        theta = np.sort(theta)
+        theta = theta[::multiplier]
+
+        r = innerRadius + (theta - initialTheta) / (2 * math.pi) * (gap) * multiplier
+        z = np.ones(theta.shape) * z
+
+        # Create the points and store their tags:
+        points = []  # point objects
+        pointTags = []  # point tags
+        breakPointObjectsDueToCutPlane = []  # only used if cutPlaneNormal is not None
+        breakPointTagsDueToCutPlane = []  # only used if cutPlaneNormal is not None
+        pointObjectsWithoutBreakPoints = []  # only used if cutPlaneNormal is not None
+        pointTagsWithoutBreakPoints = []  # only used if cutPlaneNormal is not None
+        breakPointObjectsDueToTransition = []
+        breakPointTagsDueToTransition = []
+        coordinateList = []
+
+        for j in range(len(theta)):
+            pointObject = point(r[j], theta[j], z[j], coordinate.cylindrical)
+            [x_c, y_c, z_c] = [r[j], theta[j], z[j]]
+            coordinateList.append([x_c, y_c, z_c])
+            points.append(pointObject)
+            pointTags.append(pointObject.tag)
+            if cutPlaneNormal is not None:
+                if theta[j] in listOfBreakPoints:
+                    breakPointObjectsDueToCutPlane.append(pointObject)
+                    breakPointTagsDueToCutPlane.append(pointObject.tag)
+                else:
+                    pointObjectsWithoutBreakPoints.append(pointObject)
+                    pointTagsWithoutBreakPoints.append(pointObject.tag)
+
+            # identify if the point is a break point due to the layer transition:
+            angle1 = initialTheta + (2 * math.pi - transitionNotchAngle) * multiplier
+            angle2 = (
+                initialTheta
+                + ((self.turns % 1) * 2 * math.pi + transitionNotchAngle) * multiplier
+            )
+            if math.isclose(
+                math.fmod(theta[j], 2 * math.pi), angle1, abs_tol=1e-6
+            ) or math.isclose(math.fmod(theta[j], 2 * math.pi), angle2, abs_tol=1e-6):
+                breakPointObjectsDueToTransition.append(pointObject)
+                breakPointTagsDueToTransition.append(pointObject.tag)
+
+        # Logic to break the points up into relevant geom coordinates
+        # Brick points structure (for X-Y plane only for now):
+        # [[[x1, y1, z1], [x2, y2, z2], [x3, y3, z3], [x4, y4, z4]], ...]
+        # Theoretically, very easy to extend to 8 points knowing the height of the
+
+
+        # Defining the coordinate lists to which the points are to be added
+
+        # winding one covers the list of points in the domain of theta [k, pi*k], where k is an integer number
+        winding_1 = []
+        # winding one covers the list of points in the domain of theta [pi*k, 2pi*k], where k is an integer number
+        winding_2 = []
+        # winding one covers the list of points in the domain of theta [k, pi*k], where k is an integer number
+        winding_3 = []
+        # winding one covers the list of points in the domain of theta [pi*k, 2pi*k], where k is an integer number
+        winding_4 = []
+
+        for i in range(len(theta)-1): # range is reduced as no brick can be created starting at the last point
+            # print(i)
+            # Assuming theta is a numpy array and you're looking for the index of a value close to pi
+            value_to_find = theta[i]+2*np.pi
+            tolerance = 1e-10  # Define a small tolerance
+            # Find indices where the condition is true
+            indices = np.where(np.abs(theta - value_to_find) < tolerance)[0]
+            z = self.geo.wi.h/2
+            z_p = z
+            z_n = -z
+
+            if len(indices) > 0:
+                windingUpIndex = indices[0]  # Take the first index if there are multiple matches
+
+                try:
+                    x_1 = r[i] * np.cos(theta[i])
+                    y_1 = r[i] * np.sin(theta[i])
+                    x_2 = r[i + 1] * np.cos(theta[i + 1])
+                    y_2 = r[i + 1] * np.sin(theta[i + 1])
+                    x_3 = r[windingUpIndex] * np.cos(theta[windingUpIndex])
+                    y_3 = r[windingUpIndex] * np.sin(theta[windingUpIndex])
+                    x_4 = r[windingUpIndex + 1] * np.cos(theta[windingUpIndex + 1])
+                    y_4 = r[windingUpIndex + 1] * np.sin(theta[windingUpIndex + 1])
+
+                    addPoints = [[x_1, y_1, z_n], [x_2, y_2, z_n], [x_4, y_4, z_n], [x_3, y_3, z_n], [x_1, y_1, z_p], [x_2, y_2, z_p], [x_4, y_4, z_p], [x_3, y_3, z_p]]
+
+                    k = int(theta[i] / (2 * np.pi))
+
+                    angle_in_current_turn = round(theta[i] % (2 * np.pi), 6)
+                    angle_second_brick_point = round(theta[i+1] % (2 * np.pi), 6)
+
+                    if (((round(angle_in_current_turn, 6) <= round(np.pi, 6)) or (round(angle_in_current_turn, 6) == round(2*np.pi, 6))) and (round(angle_second_brick_point, 6) <= round(np.pi, 6))):
+                        k = int(round(theta[i] / (2 * np.pi)))
+                        if k % 2 == 0:
+                            winding_1.append(addPoints)
+                        else:
+                            winding_3.append(addPoints)
+
+                    if (round(angle_in_current_turn, 6) >= round(np.pi, 6) and (round(angle_second_brick_point, 6) >= round(np.pi, 6) or round(angle_second_brick_point, 6) == 0.0)):
+
+                        if k % 2 == 0:
+                            winding_2.append(addPoints)
+                        else:
+                            winding_4.append(addPoints)
+
+                except IndexError:
+                    print('All of the winding conductor points have been found')
+
+        x_coords = []
+        y_coords = []
+        z_coords = []
+
+        # Writing the conductor file
+        windingPointList = [winding_1, winding_2, winding_3, winding_4]
+
+        if self.geo.conductorWrite:
+            dict_cond_sample = {0: {'SHAPE': 'BR8', 'XCENTRE': '0.0', 'YCENTRE': '0.0', 'ZCENTRE': '0.0', 'PHI1': '0.0', 'THETA1': '0.0', 'PSI1': '0.0', 'XCEN2': '0.0', 'YCEN2': '0.0', 'ZCEN2': '0.0', 'THETA2': '0.0', 'PHI2': '0.0', 'PSI2': '0.0', 'XP1': '-0.879570', 'YP1': '-0.002940', 'ZP1': '-1.131209', 'XP2': '-0.879570', 'YP2': '0.002940', 'ZP2': '-1.131209', 'XP3': '-0.881381', 'YP3': '0.002940', 'ZP3': '-1.114205', 'XP4': '-0.881381', 'YP4': '-0.002940', 'ZP4': '-1.114205', 'XP5': '-0.861227', 'YP5': '-0.002972', 'ZP5': '-1.129183', 'XP6': '-0.861208', 'YP6': '0.002908', 'ZP6': '-1.129182', 'XP7': '-0.863294', 'YP7': '0.002912', 'ZP7': '-1.112210', 'XP8': '-0.863313', 'YP8': '-0.002968', 'ZP8': '-1.112211', 'CURD': '201264967.975494', 'SYMMETRY': '1', 'DRIVELABEL': 'drive 0', 'IRXY': '0', 'IRYZ': '0', 'IRZX': '0', 'TOLERANCE': '1e-6'}}
+
+            # Use a dictionary to manage dict_cond_1, dict_cond_2, etc.
+            dict_conds = {}
+
+            k = 1  # Start from 1 for dict_cond_1, dict_cond_2, ...
+            for winding in windingPointList:
+                n = 0
+                dict_conds[k] = {}
+                for brick in winding:
+                    dict_conds[k][n] = copy.deepcopy(dict_cond_sample[0])
+                    for pointIndex in range(8):
+                        dict_conds[k][n][f'XP{pointIndex + 1}'] = str(brick[pointIndex][0])
+                        dict_conds[k][n][f'YP{pointIndex + 1}'] = str(brick[pointIndex][1])
+                        dict_conds[k][n][f'ZP{pointIndex + 1}'] = str(brick[pointIndex][2])
+                    n += 1
+                k += 1
+
+            target_dir = os.path.join(os.getcwd(), 'tests', '_outputs', 'parsers')
+
+            # Ensure the target directory exists
+            os.makedirs(target_dir, exist_ok=True)
+            for i in range (1, 5):
+                # Define the output file path
+                out_file = os.path.join(target_dir, f'winding_{i}.cond')
+                input_dict = dict_conds[i]
+                list_of_shapes = ['BR8']
+                for shape in list_of_shapes:
+                        pc = ParserCOND()
+                        print(f'the input dictionary is {input_dict}')
+                        pc.write_cond(input_dict, out_file)
+
+        # =============================================================================
+        # GENERATING POINTS ENDS ======================================================
+        # =============================================================================
+
+        # =============================================================================
+        # GENERATING SPLINES STARTS ===================================================
+        # =============================================================================
+
+        # Create the spline with the points:
+        spline = gmsh.model.occ.addSpline(pointTags)
+
+        # Split the spline into sub-curves:
+        sectionsPerCurve = int(spt / cpt)
+
+        # Create a list of point tags that will split the spline:
+        # Basically, they are the points to divide the spirals into sectionsPerCurve
+        # turns. However, some other points are also included to support the float
+        # number of turns. It is best to visually look at the divisions with
+        # gmsh.fltk.run() to understand why the split points are chosen the way they are
+        # selected.
+        if cutPlaneNormal is None:
+            pointObjectsWithoutBreakPoints = points
+            pointTagsWithoutBreakPoints = pointTags
+
+        splitPointTags = list(
+            set(pointTagsWithoutBreakPoints[:-1:sectionsPerCurve])
+            | set(pointTagsWithoutBreakPoints[-spt - 1 :: -spt])
+            | set(breakPointTagsDueToCutPlane)
+            | set(breakPointTagsDueToTransition)
+        )
+        splitPointTags = sorted(splitPointTags)
+        # Remove the first element of the list (starting point):
+        _, *splitPointTags = splitPointTags
+
+        # Also create a list of corresponding point objects:
+        splitPoints = list(
+            set(pointObjectsWithoutBreakPoints[:-1:sectionsPerCurve])
+            | set(pointObjectsWithoutBreakPoints[-spt - 1 :: -spt])
+            | set(breakPointObjectsDueToCutPlane)
+            | set(breakPointObjectsDueToTransition)
+        )
+        splitPoints = sorted(splitPoints, key=lambda x: x.tag)
+        # Remove the first element of the list (starting point):
+        _, *splitPoints = splitPoints
+
+        # Split the spline:
+        dims = [0] * len(splitPointTags)
+        _, splines = gmsh.model.occ.fragment(
+            [(1, spline)],
+            list(zip(dims, splitPointTags)),
+            removeObject=True,
+            removeTool=True,
+        )
+        splines = splines[0]
+        self.splineTags = [j for _, j in splines]
+
+        # Note the turn number of each spline. This will be used in getSplineTag and
+        # getSplineTags methods.
+        self.splineTurns = []
+        for i in range(len(self.splineTags)):
+            if i == 0:
+                startPoint = points[0]
+                endPoint = splitPoints[0]
+            elif i == len(self.splineTags) - 1:
+                startPoint = splitPoints[-1]
+                endPoint = points[-1]
+            else:
+                startPoint = splitPoints[i - 1]
+                endPoint = splitPoints[i]
+
+            startTurn = (startPoint.theta - initialTheta) / (2 * math.pi)
+            startTurn = round(startTurn / self.turnRes) * self.turnRes
+            endTurn = (endPoint.theta - initialTheta) / (2 * math.pi)
+            endTurn = round(endTurn / self.turnRes) * self.turnRes
+
+            if direction is direction.ccw:
+                self.splineTurns.append((startTurn, endTurn))
+            else:
+                self.splineTurns.append((-startTurn, -endTurn))
+
+        # Check if splineTurn tuples starts with the small turn number:
+        for i in range(len(self.splineTurns)):
+            self.splineTurns[i] = sorted(self.splineTurns[i])
+
+        # =============================================================================
+        # GENERATING SPLINES ENDS =====================================================
+        # =============================================================================
+
+        # Find start and end points of the spiral curve:
+        gmsh.model.occ.synchronize()  # synchronize the model to make getBoundary work
+        self.startPointTag = gmsh.model.getBoundary([(1, self.getSplineTag(0))])[1][1]
+        self.endPointTag = gmsh.model.getBoundary(
+            [(1, self.getSplineTag(self.turns, endPoint=True))]
+        )[1][1]
+
+    def getSplineTag(self, turn, endPoint=False):
+        """
+        Returns the spline tag at a specific turn. It returns the spline tag of the
+        section that is on the turn except its end point.
+
+        :param turn: turn number (it can be a float)
+        :type turn: float
+        :param endPoint: if True, return the spline tag of the section that is on the
+            turn including its end point but not its start point (default: False)
+        :type endPoint: bool, optional
+        :return: spline tag
+        """
+        if endPoint:
+            for i, r in enumerate(self.splineTurns):
+                if r[0] + (self.turnRes / 2) < turn <= r[1] + (self.turnRes / 2):
+                    return self.splineTags[i]
+        else:
+            for i, r in enumerate(self.splineTurns):
+                if r[0] - (self.turnRes / 2) <= turn < r[1] - (self.turnRes / 2):
+                    return self.splineTags[i]
+
+    def getPointTag(self, turn, endPoint=False):
+        """
+        Returns the point object at a specific turn.
+
+        :param turn: turn number (it can be a float)
+        :type turn: float
+        :return: point object
+        :rtype: point
+        """
+        if turn < 0 or turn > self.turns:
+            raise ValueError("Turn number is out of range!")
+
+        if turn == 0:
+            return self.startPointTag
+        elif turn == self.turns:
+            return self.endPointTag
+        else:
+            curveTag = self.getSplineTag(turn, endPoint=endPoint)
+            if endPoint:
+                points = gmsh.model.getBoundary([(1, curveTag)])
+                return points[1][1]
+            else:
+                points = gmsh.model.getBoundary([(1, curveTag)])
+                return points[0][1]
+
+    def getSplineTags(self, turnStart=None, turnEnd=None):
+        """
+        Get the spline tags from a specific turn to another specific turn. If turnStart
+        and turnEnd are not specified, it returns all the spline tags.
+
+        :param turnStart: start turn number (it can be a float) (default: None)
+        :type turnStart: float, optional
+        :param turnEnd: end turn number (it can be a float) (default: None)
+        :type turnEnd: float, optional
+        :return: spline tags
+        :rtype: list[int]
+        """
+        if turnStart is None and turnEnd is None:
+            return self.splineTags
+        elif turnStart is None or turnEnd is None:
+            raise ValueError(
+                "turnStart and turnEnd must be both specified or both not specified."
+                " You specified only one of them."
+            )
+        else:
+            start = self.splineTags.index(self.getSplineTag(turnStart, False))
+            end = self.splineTags.index(self.getSplineTag(turnEnd, True)) + 1
+            return self.splineTags[start:end]
+

fiqus/getdp_runners/RunGetdpCCT.py

@@ -11,14 +11,14 @@ from fiqus.pro_assemblers.ProAssembler import ASS_PRO as ass_pro
 
 
 class RunGetdpCCT:
-    def __init__(self, fdm, settings: dict = None, verbose=True):
+    def __init__(self, fdm, GetDP_path: dict = None, verbose=True):
         """
         Class to preparing brep files by adding terminals.
         :param fdm: FiQuS data model
         :param verbose: If True more information is printed in python console.
         """
         self.cctdm = fdm.magnet
-        self.settings = settings
+        self.GetDP_path = GetDP_path
         self.model_folder = os.path.join(os.getcwd())
         self.magnet_name = fdm.general.magnet_name
         self.mesh_folder = Path(self.model_folder).parent
@@ -26,7 +26,7 @@ class RunGetdpCCT:
         self.cctrm = uff.read_data_from_yaml(os.path.join(self.model_folder, f'{self.magnet_name}.regions'), RegionsModel)
         self.ap = ass_pro(os.path.join(self.model_folder, self.magnet_name))
         self.gu = GmshUtils(self.model_folder, self.verbose)
-        self.gu.initialize()
+        self.gu.initialize(verbosity_Gmsh=fdm.run.verbosity_Gmsh)
         self.pos_names = []
         # for variable, volume, file_ext in zip(self.cctdm.solve.variables, self.cctdm.solve.volumes, self.cctdm.solve.file_exts):
         #     self.pos_names.append(f'{variable}_{volume}.{file_ext}')
@@ -55,7 +55,7 @@ class RunGetdpCCT:
         if self.verbose:
             print('Solving Started !!!')
             start_time = timeit.default_timer()
-        getdp_binary = self.settings['GetDP_path']
+        getdp_binary = self.GetDP_path
         gmsh.onelab.run(f"{self.magnet_name}", f"{getdp_binary} {os.path.join(self.model_folder, self.magnet_name)}.pro {command} -msh {os.path.join(self.mesh_folder, self.magnet_name)}.msh")
         gmsh.onelab.setChanged("GetDP", 0)