figrecipe 0.5.0__py3-none-any.whl → 0.7.4__py3-none-any.whl

figrecipe-0.7.4.dist-info/METADATA

@@ -0,0 +1,429 @@
+Metadata-Version: 2.4
+Name: figrecipe
+Version: 0.7.4
+Summary: Reproducible matplotlib wrapper with mm-precision layouts
+Project-URL: Homepage, https://github.com/ywatanabe1989/figrecipe
+Project-URL: Documentation, https://github.com/ywatanabe1989/figrecipe#readme
+Project-URL: Repository, https://github.com/ywatanabe1989/figrecipe.git
+Project-URL: Issues, https://github.com/ywatanabe1989/figrecipe/issues
+Author-email: Yusuke Watanabe <ywatanabe@scitex.ai>
+License-Expression: AGPL-3.0
+License-File: LICENSE
+Keywords: matplotlib,millimeter,plotting,publication,recipe,reproducibility,scientific,visualization,yaml
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: GNU Affero General Public License v3
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Requires-Python: >=3.9
+Requires-Dist: matplotlib>=3.5.0
+Requires-Dist: numpy>=1.20.0
+Requires-Dist: ruamel-yaml>=0.17.0
+Requires-Dist: scipy>=1.7.0
+Provides-Extra: all
+Requires-Dist: flask>=2.0.0; extra == 'all'
+Requires-Dist: pandas>=1.3.0; extra == 'all'
+Requires-Dist: pillow>=9.0.0; extra == 'all'
+Requires-Dist: pytest-cov>=4.0.0; extra == 'all'
+Requires-Dist: pytest>=7.0.0; extra == 'all'
+Requires-Dist: seaborn>=0.12.0; extra == 'all'
+Provides-Extra: dev
+Requires-Dist: pre-commit>=3.5.0; extra == 'dev'
+Requires-Dist: pytest-cov>=4.0.0; extra == 'dev'
+Requires-Dist: pytest>=7.0.0; extra == 'dev'
+Provides-Extra: editor
+Requires-Dist: flask>=2.0.0; extra == 'editor'
+Requires-Dist: pillow>=9.0.0; extra == 'editor'
+Provides-Extra: imaging
+Requires-Dist: pillow>=9.0.0; extra == 'imaging'
+Provides-Extra: seaborn
+Requires-Dist: pandas>=1.3.0; extra == 'seaborn'
+Requires-Dist: seaborn>=0.12.0; extra == 'seaborn'
+Description-Content-Type: text/markdown
+
+<!-- ---
+!-- Timestamp: 2025-12-22 14:49:10
+!-- Author: ywatanabe
+!-- File: /home/ywatanabe/proj/figrecipe/README.md
+!-- --- -->
+
+<p align="center">
+  <a href="https://scitex.ai" target="_blank">
+    <img src="docs/figrecipe_logo.png" alt="figrecipe logo" width="200"/>
+  </a>
+</p>
+
+# FigRecipe
+
+**Reproducible matplotlib figures with mm-precision layouts.**
+FigRecipe is a lightweight recording & reproduction layer for matplotlib,
+designed for scientific figures that must remain **editable, inspectable,
+and reproducible**.
+
+Part of **SciTeX™ – Research OS for reproducible science**
+https://scitex.ai
+
+[![PyPI version](https://badge.fury.io/py/figrecipe.svg)](https://badge.fury.io/py/figrecipe)
+[![Tests](https://github.com/ywatanabe1989/figrecipe/actions/workflows/test.yml/badge.svg)](https://github.com/ywatanabe1989/figrecipe/actions/workflows/test.yml)
+[![License: AGPL-3.0](https://img.shields.io/badge/License-AGPL--3.0-blue.svg)](https://www.gnu.org/licenses/agpl-3.0)
+
+---
+
+## Why FigRecipe?
+
+In scientific workflows, figures are often:
+- hard to reproduce once scripts change,
+- resized manually in pixels or inches,
+- impossible to partially reuse or inspect later.
+
+**FigRecipe solves this by recording plotting calls as a structured “recipe”**,
+allowing figures to be:
+- faithfully reproduced,
+- partially re-rendered,
+- inspected for underlying data,
+- laid out in **exact millimeters** for publication.
+
+---
+
+## Key Features
+
+- ✅ Drop-in replacement for `matplotlib.pyplot` (use `figrecipe.pyplot` to enable recording)
+- ✅ Automatic recording of plotting calls
+- ✅ Reproduce figures from a YAML recipe
+- ✅ Extract plotted data programmatically
+- ✅ Selective reproduction of specific plots
+- ✅ Millimeter-based layout (journal-ready)
+- ✅ Publication-quality style presets
+- ✅ Dark theme support (data colors preserved)
+- ✅ Seamless seaborn integration
+- ✅ Crop figures to content with mm margins
+- ✅ **Interactive GUI editor** with live preview
+
+---
+
+## Examples
+
+📓 **[View Demo Notebook on nbviewer](https://nbviewer.org/github/ywatanabe1989/figrecipe/blob/main/examples/figrecipe_demo.ipynb)** (recommended)
+
+The notebook includes side-by-side comparisons of original and reproduced figures.
+
+Source: [examples/figrecipe_demo.ipynb](examples/figrecipe_demo.ipynb)
+
+### Supported Plot Types
+
+FigRecipe supports 46 matplotlib plot types, organized into 9 categories:
+
+<details>
+<summary><b>All Plot Types</b> (click to expand)</summary>
+<p align="center">
+  <img src="docs/images/plot_types/all_plot_types.png" alt="All Plot Types" width="100%"/>
+</p>
+</details>
+
+| Line & Curve | Scatter | Distribution |
+|:---:|:---:|:---:|
+| ![Line](docs/images/plot_types/category_line_curve.png) | ![Scatter](docs/images/plot_types/category_scatter_points.png) | ![Distribution](docs/images/plot_types/category_distribution.png) |
+
+| Bar & Categorical | Contour & Surface | 2D/Image/Matrix |
+|:---:|:---:|:---:|
+| ![Bar](docs/images/plot_types/category_bar_categorical.png) | ![Contour](docs/images/plot_types/category_contour_surface.png) | ![Image](docs/images/plot_types/category_2d_image_matrix.png) |
+
+| Vector & Flow | Spectral & Signal | Special |
+|:---:|:---:|:---:|
+| ![Vector](docs/images/plot_types/category_vector_flow.png) | ![Spectral](docs/images/plot_types/category_spectral_signal.png) | ![Special](docs/images/plot_types/category_special.png) |
+
+Generate all plots: `python examples/demo_plot_all.py`
+
+## Installation
+
+```bash
+pip install figrecipe
+
+# Optional extras
+pip install figrecipe[seaborn]   # seaborn + pandas support
+pip install figrecipe[imaging]   # image cropping (Pillow)
+pip install figrecipe[all]       # all extras
+
+# Optional: for PDF export from notebooks (SVG → PDF)
+sudo apt install inkscape  # Linux
+brew install inkscape      # macOS
+```
+
+**Requirements:** Python >= 3.9
+
+## Basic Usage
+
+### Recording & Saving
+
+``` python
+import figrecipe as fr
+# import figrecipe.pyplot as plt
+import numpy as np
+
+x = np.linspace(0, 10, 100)
+y = np.sin(x)
+
+fig, ax = fr.subplots() # or plt.subplots()
+ax.plot(x, y, color='red', linewidth=2, id='sine_wave')
+ax.set_xlabel('Time (s)')
+ax.set_ylabel('Amplitude')
+
+# Save image + recipe
+img_path, yaml_path, result = fr.save(fig, 'figure.png')
+# → creates: figure.png + figure.yaml
+```
+
+### Reproducing a Figure
+
+``` python
+import figrecipe as fr
+
+fig, ax = fr.reproduce('figure.yaml')
+```
+
+### Extracting Plotted Data
+
+``` python
+import figrecipe as fr
+
+data = fr.extract_data('figure.yaml')
+# {'sine_wave': {'x': array([...]), 'y': array([...])}}
+```
+
+### Millimeter-Based Layout (Publication-Ready)
+
+``` python
+fig, ax = fr.subplots(
+    axes_width_mm=60,
+    axes_height_mm=40,
+    margin_left_mm=15,
+    margin_bottom_mm=12,
+)
+```
+This guarantees consistent sizing across editors, exports, and journals.
+
+### Style Presets
+
+``` python
+fr.list_presets()
+# ['MATPLOTLIB', 'SCITEX']
+
+# Publication-quality preset (applied globally)
+fr.load_style('SCITEX')
+fig, ax = fr.subplots()
+
+# Dark theme (UI-only, data colors preserved)
+fr.load_style('SCITEX_DARK')
+# or: fr.load_style('SCITEX', dark=True)
+
+# Custom style
+fr.load_style('/path/to/my_style.yaml')
+```
+
+See [src/figrecipe/styles/presets/](src/figrecipe/styles/presets/) for full examples.
+
+### Interactive GUI Editor
+
+``` python
+import figrecipe as fr
+import numpy as np
+
+fig, ax = fr.subplots()
+ax.plot(np.sin(np.linspace(0, 10, 100)))
+
+# Launch browser-based editor
+overrides = fr.edit(fig, port=5050)
+
+# Returns style overrides when editor is closed (Ctrl+C)
+# Apply overrides to future figures or save to custom YAML
+```
+
+<p align="center">
+  <img src="docs/images/gui_editor_demo.png" alt="FigRecipe GUI Editor" width="100%"/>
+</p>
+
+The editor provides:
+- **Live preview** with real-time style updates
+- **Theme switching** between SCITEX/MATPLOTLIB presets
+- **Element selection** with hover highlighting
+- **Property panels** for Figure, Axis, Legend, and Labels
+- **Download** in PNG, SVG, PDF formats
+- **Export** updated recipe YAML
+
+| Axis Properties | Download Options | Dark Mode |
+|:---:|:---:|:---:|
+| ![Axis Panel](docs/images/editor_axis_panel.png) | ![Download](docs/images/editor_download_options.png) | ![Dark Mode](docs/images/editor_dark_mode.png) |
+
+### Style Format (YAML)
+
+``` yaml
+# Timestamp: "2025-12-22 12:40:36 (ywatanabe)"
+# File: ./src/figrecipe/styles/presets/SCITEX.yaml
+# FIGRECIPE Style Preset
+# ======================
+# Publication-quality settings for scientific figures.
+# Optimized for scientific journals with Arial font.
+
+axes:
+  width_mm: 40
+  height_mm: 28
+  thickness_mm: 0.2
+
+margins:
+  left_mm: 1
+  right_mm: 1
+  bottom_mm: 1
+  top_mm: 1
+
+spacing:
+  horizontal_mm: 8
+  vertical_mm: 10
+
+fonts:
+  family: "Arial"
+  axis_label_pt: 7
+  tick_label_pt: 7
+  title_pt: 8
+  suptitle_pt: 8
+  legend_pt: 6
+  annotation_pt: 6
+
+padding:
+  label_pt: 2.0
+  tick_pt: 2.0
+  title_pt: 4.0
+
+lines:
+  trace_mm: 0.2
+  errorbar_mm: 0.2
+  errorbar_cap_mm: 0.8
+
+ticks:
+  length_mm: 0.8
+  thickness_mm: 0.2
+  direction: "out"
+  n_ticks: 4
+
+markers:
+  size_mm: 0.8
+  scatter_mm: 0.8
+  edge_width_mm: null  # None = no border (cleaner than 0)
+
+legend:
+  frameon: false         # No frame for clean look
+  bg: null               # Background (null = use theme.legend_bg)
+  edgecolor: null        # Frame edge color
+  alpha: 1.0             # Transparency
+  loc: "best"
+
+output:
+  dpi: 300
+  transparent: true
+  format: "pdf"
+
+behavior:
+  auto_scale_axes: true
+  hide_top_spine: true
+  hide_right_spine: true
+  grid: false
+
+theme:
+  mode: "light"
+  dark:
+    figure_bg: "transparent"
+    axes_bg: "transparent"
+    legend_bg: "transparent"
+    text: "#d4d4d4"
+    spine: "#d4d4d4"
+    tick: "#d4d4d4"
+    grid: "#3a3a3a"
+  light:
+    figure_bg: "transparent"
+    axes_bg: "transparent"
+    legend_bg: "transparent"
+    text: "black"
+    spine: "black"
+    tick: "black"
+    grid: "#cccccc"
+
+# SciTeX Color Palette (RGB format)
+colors:
+  palette:
+    - [0, 128, 192]      # blue
+    - [255, 70, 50]      # red
+    - [20, 180, 20]      # green
+    - [230, 160, 20]     # yellow
+    - [200, 50, 255]     # purple
+    - [20, 200, 200]     # lightblue
+    - [228, 94, 50]      # orange
+    - [255, 150, 200]    # pink
+
+  # Named colors
+  white: [255, 255, 255]
+  black: [0, 0, 0]
+  blue: [0, 128, 192]
+  red: [255, 70, 50]
+  pink: [255, 150, 200]
+  green: [20, 180, 20]
+  yellow: [230, 160, 20]
+  gray: [128, 128, 128]
+  grey: [128, 128, 128]
+  purple: [200, 50, 255]
+  lightblue: [20, 200, 200]
+  brown: [128, 0, 0]
+  navy: [0, 0, 100]
+  orange: [228, 94, 50]
+
+  # Semantic
+  primary: [0, 128, 192]
+  secondary: [255, 70, 50]
+  accent: [20, 180, 20]
+
+# EOF
+```
+
+
+### API Overview
+
+| Import                           | Description                                       |
+|----------------------------------|---------------------------------------------------|
+| `import figrecipe.pyplot as plt` | Drop-in replacement of `matplotlib.pyplot as plt` |
+| `import figrecipe as fr`         | Import figrecipe package                          |
+|----------------------------------|---------------------------------------------------|
+| Function                         |                                                   |
+|----------------------------------|---------------------------------------------------|
+| `fr.subplots()`                  | Create a recording-enabled figure                 |
+| `fr.save(fig, 'fig.png')`        | Save image + recipe                               |
+| `fr.reproduce('fig.yaml')`       | Reproduce figure from recipe                      |
+| `fr.extract_data('fig.yaml')`    | Extract plotted data                              |
+| `fr.info('fig.yaml')`            | Inspect recipe metadata                           |
+| `fr.edit(fig)`                   | Launch interactive GUI editor                     |
+| `fr.load_style()`                | Load style preset (global)                        |
+| `fr.list_presets()`              | List available presets                            |
+| `fr.crop('fig.png')`             | Crop to content with mm margin                    |
+
+## Positioning
+
+FigRecipe focuses on *how* figures are constructed, not *what* they represent.
+
+FigRecipe provides recording, reproduction, layout fidelity, and interactive editing.
+
+Higher-level workflows (figures–tables–statistics bundle, integration with manuscript writing) are handled in:
+
+FTS (Figure-Table-Statistics Bundle) in SciTeX Ecosystem:
+https://github.com/ywatanabe1989/scitex-code
+https://scitex.ai/vis/
+https://scitex.ai/writer/
+
+
+## License
+
+AGPL-3.0 See [LICENSE](LICENSE)
+.
+
+<!-- EOF -->

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