PyPI - figpack - Versions diffs - 0.2.5__py3-none-any.whl → 0.2.7__py3-none-any.whl - Mend

figpack 0.2.5py3-none-any.whl → 0.2.7py3-none-any.whl

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Files changed (24) hide show

figpack/__init__.py +1 -1
figpack/core/_bundle_utils.py +2 -2
figpack/core/_save_figure.py +3 -3
figpack/core/_show_view.py +5 -1
figpack/core/_upload_bundle.py +17 -1
figpack/core/figpack_view.py +3 -3
figpack/{figpack-gui-dist/assets/index-CrYQmIda.js → figpack-figure-dist/assets/index-CTBd5_Gw.js} +72 -71
figpack/{figpack-gui-dist → figpack-figure-dist}/index.html +1 -1
figpack/spike_sorting/views/Autocorrelograms.py +29 -19
figpack/spike_sorting/views/CrossCorrelograms.py +29 -19
figpack/spike_sorting/views/UnitsTable.py +27 -8
figpack/views/DataFrame.py +109 -0
figpack/views/Markdown.py +12 -2
figpack/views/MatplotlibFigure.py +26 -3
figpack/views/PlotlyFigure.py +18 -2
figpack/views/__init__.py +1 -0
{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/METADATA +2 -1
{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/RECORD +24 -23
/figpack/{figpack-gui-dist → figpack-figure-dist}/assets/index-Cmae55E4.css +0 -0
/figpack/{figpack-gui-dist → figpack-figure-dist}/assets/neurosift-logo-CLsuwLMO.png +0 -0
{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/WHEEL +0 -0
{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/entry_points.txt +0 -0
{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/licenses/LICENSE +0 -0
{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/top_level.txt +0 -0

figpack/{figpack-gui-dist → figpack-figure-dist}/index.html RENAMED Viewed

@@ -5,7 +5,7 @@
     <link rel="icon" type="image/png" href="./assets/neurosift-logo-CLsuwLMO.png" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>figpack figure</title>
-    <script type="module" crossorigin src="./assets/index-CrYQmIda.js"></script>
+    <script type="module" crossorigin src="./assets/index-CTBd5_Gw.js"></script>
     <link rel="stylesheet" crossorigin href="./assets/index-Cmae55E4.css">
   </head>
   <body>

figpack/spike_sorting/views/Autocorrelograms.py CHANGED Viewed

@@ -77,32 +77,42 @@ class Autocorrelograms(FigpackView):
         group.attrs["view_type"] = "Autocorrelograms"
         # Store the number of autocorrelograms
-        group.attrs["num_autocorrelograms"] = len(self.autocorrelograms)
+        num_autocorrelograms = len(self.autocorrelograms)
+        group.attrs["num_autocorrelograms"] = num_autocorrelograms
-        # Store metadata for each autocorrelogram
+        if num_autocorrelograms == 0:
+            return
+        # Get dimensions from first autocorrelogram
+        num_bins = len(self.autocorrelograms[0].bin_counts)
+        # Store bin edges (same for all autocorrelograms)
+        group.create_dataset(
+            "bin_edges_sec",
+            data=self.autocorrelograms[0].bin_edges_sec,
+            dtype=np.float32,
+        )
+        # Create 2D array for all bin counts
+        bin_counts = np.zeros((num_autocorrelograms, num_bins), dtype=np.int32)
+        # Store metadata for each autocorrelogram and populate bin counts array
         autocorrelogram_metadata = []
         for i, autocorr in enumerate(self.autocorrelograms):
-            autocorr_name = f"autocorrelogram_{i}"
-            # Store metadata
             metadata = {
-                "name": autocorr_name,
                 "unit_id": str(autocorr.unit_id),
-                "num_bins": len(autocorr.bin_counts),
+                "index": i,  # Store index to map to bin_counts array
+                "num_bins": num_bins,
             }
             autocorrelogram_metadata.append(metadata)
-            # Create arrays for this autocorrelogram
-            group.create_dataset(
-                f"{autocorr_name}/bin_edges_sec",
-                data=autocorr.bin_edges_sec,
-                dtype=np.float32,
-            )
-            group.create_dataset(
-                f"{autocorr_name}/bin_counts",
-                data=autocorr.bin_counts,
-                dtype=np.int32,
-            )
+            bin_counts[i] = autocorr.bin_counts
+        # Store the bin counts as a single 2D dataset
+        group.create_dataset(
+            "bin_counts",
+            data=bin_counts,
+            dtype=np.int32,
+        )
         # Store the autocorrelogram metadata
         group.attrs["autocorrelograms"] = autocorrelogram_metadata

figpack/spike_sorting/views/CrossCorrelograms.py CHANGED Viewed

@@ -90,33 +90,43 @@ class CrossCorrelograms(FigpackView):
             group.attrs["hide_unit_selector"] = self.hide_unit_selector
         # Store the number of cross-correlograms
-        group.attrs["num_cross_correlograms"] = len(self.cross_correlograms)
+        num_cross_correlograms = len(self.cross_correlograms)
+        group.attrs["num_cross_correlograms"] = num_cross_correlograms
-        # Store metadata for each cross-correlogram
+        if num_cross_correlograms == 0:
+            return
+        # Get dimensions from first cross-correlogram
+        num_bins = len(self.cross_correlograms[0].bin_counts)
+        # Store bin edges (same for all cross-correlograms)
+        group.create_dataset(
+            "bin_edges_sec",
+            data=self.cross_correlograms[0].bin_edges_sec,
+            dtype=np.float32,
+        )
+        # Create 2D array for all bin counts
+        bin_counts = np.zeros((num_cross_correlograms, num_bins), dtype=np.int32)
+        # Store metadata for each cross-correlogram and populate bin counts array
         cross_correlogram_metadata = []
         for i, cross_corr in enumerate(self.cross_correlograms):
-            cross_corr_name = f"cross_correlogram_{i}"
-            # Store metadata
             metadata = {
-                "name": cross_corr_name,
                 "unit_id1": str(cross_corr.unit_id1),
                 "unit_id2": str(cross_corr.unit_id2),
-                "num_bins": len(cross_corr.bin_counts),
+                "index": i,  # Store index to map to bin_counts array
+                "num_bins": num_bins,
             }
             cross_correlogram_metadata.append(metadata)
-            # Create arrays for this cross-correlogram
-            group.create_dataset(
-                f"{cross_corr_name}/bin_edges_sec",
-                data=cross_corr.bin_edges_sec,
-                dtype=np.float32,
-            )
-            group.create_dataset(
-                f"{cross_corr_name}/bin_counts",
-                data=cross_corr.bin_counts,
-                dtype=np.int32,
-            )
+            bin_counts[i] = cross_corr.bin_counts
+        # Store the bin counts as a single 2D dataset
+        group.create_dataset(
+            "bin_counts",
+            data=bin_counts,
+            dtype=np.int32,
+        )
         # Store the cross-correlogram metadata
         group.attrs["cross_correlograms"] = cross_correlogram_metadata

figpack/spike_sorting/views/UnitsTable.py CHANGED Viewed

@@ -3,6 +3,7 @@ UnitsTable view for figpack - displays a table of units with their properties
 """
 from typing import List, Optional
+import json
 import numpy as np
 import zarr
@@ -58,13 +59,31 @@ class UnitsTable(FigpackView):
         columns_metadata = [col.to_dict() for col in self.columns]
         group.attrs["columns"] = columns_metadata
-        # Store rows metadata
-        rows_metadata = [row.to_dict() for row in self.rows]
-        group.attrs["rows"] = rows_metadata
+        # Store rows data in a zarr array
+        rows_data = [row.to_dict() for row in self.rows]
+        rows_json = json.dumps(rows_data).encode("utf-8")
+        rows_array = np.frombuffer(rows_json, dtype=np.uint8)
+        group.create_dataset(
+            "rows_data",
+            data=rows_array,
+            dtype=np.uint8,
+            chunks=True,
+            compressor=zarr.Blosc(cname="zstd", clevel=3, shuffle=zarr.Blosc.SHUFFLE),
+        )
+        group.attrs["rows_data_size"] = len(rows_json)
-        # Store similarity scores if provided
+        # Store similarity scores in a zarr array
         if self.similarity_scores:
-            similarity_scores_metadata = [
-                score.to_dict() for score in self.similarity_scores
-            ]
-            group.attrs["similarityScores"] = similarity_scores_metadata
+            scores_data = [score.to_dict() for score in self.similarity_scores]
+            scores_json = json.dumps(scores_data).encode("utf-8")
+            scores_array = np.frombuffer(scores_json, dtype=np.uint8)
+            group.create_dataset(
+                "similarity_scores_data",
+                data=scores_array,
+                dtype=np.uint8,
+                chunks=True,
+                compressor=zarr.Blosc(
+                    cname="zstd", clevel=3, shuffle=zarr.Blosc.SHUFFLE
+                ),
+            )
+            group.attrs["similarity_scores_data_size"] = len(scores_json)

figpack/views/DataFrame.py ADDED Viewed

@@ -0,0 +1,109 @@
+"""
+DataFrame view for figpack - displays pandas DataFrames as interactive tables
+"""
+import json
+from typing import Any, Dict, Union
+import numpy as np
+import pandas as pd
+import zarr
+from ..core.figpack_view import FigpackView
+class DataFrame(FigpackView):
+    """
+    A DataFrame visualization component for displaying pandas DataFrames as interactive tables
+    """
+    def __init__(self, df: pd.DataFrame):
+        """
+        Initialize a DataFrame view
+        Args:
+            df: The pandas DataFrame to display
+        Raises:
+            ValueError: If df is not a pandas DataFrame
+        """
+        if not isinstance(df, pd.DataFrame):
+            raise ValueError("df must be a pandas DataFrame")
+        self.df = df
+    def _write_to_zarr_group(self, group: zarr.Group) -> None:
+        """
+        Write the DataFrame data to a Zarr group
+        Args:
+            group: Zarr group to write data into
+        """
+        # Set the view type
+        group.attrs["view_type"] = "DataFrame"
+        try:
+            # Convert DataFrame to CSV string
+            csv_string = self.df.to_csv(index=False)
+            # Convert CSV string to bytes and store in numpy array
+            csv_bytes = csv_string.encode("utf-8")
+            csv_array = np.frombuffer(csv_bytes, dtype=np.uint8)
+            # Store the CSV data as compressed array
+            group.create_dataset(
+                "csv_data",
+                data=csv_array,
+                dtype=np.uint8,
+                chunks=True,
+                compressor=zarr.Blosc(
+                    cname="zstd", clevel=3, shuffle=zarr.Blosc.SHUFFLE
+                ),
+            )
+            # Store metadata about the DataFrame
+            group.attrs["data_size"] = len(csv_bytes)
+            group.attrs["row_count"] = len(self.df)
+            group.attrs["column_count"] = len(self.df.columns)
+            # Store column information
+            column_info = []
+            for col in self.df.columns:
+                dtype_str = str(self.df[col].dtype)
+                # Simplify dtype names for frontend
+                if dtype_str.startswith("int"):
+                    simple_dtype = "integer"
+                elif dtype_str.startswith("float"):
+                    simple_dtype = "float"
+                elif dtype_str.startswith("bool"):
+                    simple_dtype = "boolean"
+                elif dtype_str.startswith("datetime"):
+                    simple_dtype = "datetime"
+                elif dtype_str == "object":
+                    # Check if it's actually strings
+                    if self.df[col].dtype == "object":
+                        simple_dtype = "string"
+                    else:
+                        simple_dtype = "object"
+                else:
+                    simple_dtype = "string"
+                column_info.append(
+                    {"name": str(col), "dtype": dtype_str, "simple_dtype": simple_dtype}
+                )
+            # Store column info as JSON string
+            column_info_json = json.dumps(column_info)
+            group.attrs["column_info"] = column_info_json
+        except Exception as e:
+            # If DataFrame processing fails, store error information
+            group.attrs["error"] = f"Failed to process DataFrame: {str(e)}"
+            group.attrs["row_count"] = 0
+            group.attrs["column_count"] = 0
+            group.attrs["data_size"] = 0
+            group.attrs["column_info"] = "[]"
+            # Create empty array as placeholder
+            group.create_dataset(
+                "csv_data", data=np.array([], dtype=np.uint8), dtype=np.uint8
+            )

figpack/views/Markdown.py CHANGED Viewed

@@ -2,6 +2,7 @@
 Markdown view for figpack - displays markdown content
 """
+import numpy as np
 import zarr
 from ..core.figpack_view import FigpackView
@@ -31,5 +32,14 @@ class Markdown(FigpackView):
         # Set the view type
         group.attrs["view_type"] = "Markdown"
-        # Store the markdown content
-        group.attrs["content"] = self.content
+        # Convert string content to numpy array of bytes
+        content_bytes = self.content.encode("utf-8")
+        content_array = np.frombuffer(content_bytes, dtype=np.uint8)
+        # Store the markdown content as a zarr array
+        group.create_dataset(
+            "content_data", data=content_array, dtype=np.uint8, chunks=True
+        )
+        # Store content size in attrs
+        group.attrs["data_size"] = len(content_bytes)

figpack/views/MatplotlibFigure.py CHANGED Viewed

@@ -3,6 +3,7 @@ MatplotlibFigure view for figpack - displays matplotlib figures
 """
 import io
+import numpy as np
 from typing import Any, Union
 import zarr
@@ -47,8 +48,18 @@ class MatplotlibFigure(FigpackView):
             svg_string = svg_buffer.getvalue()
             svg_buffer.close()
-            # Store the SVG data
-            group.attrs["svg_data"] = svg_string
+            # Convert SVG string to numpy array and store in zarr array
+            svg_bytes = svg_string.encode("utf-8")
+            svg_array = np.frombuffer(svg_bytes, dtype=np.uint8)
+            group.create_dataset(
+                "svg_data",
+                data=svg_array,
+                dtype=np.uint8,
+                chunks=True,
+                compressor=zarr.Blosc(
+                    cname="zstd", clevel=3, shuffle=zarr.Blosc.SHUFFLE
+                ),
+            )
             # Store figure dimensions for reference
             fig_width, fig_height = self.fig.get_size_inches()
@@ -58,10 +69,22 @@ class MatplotlibFigure(FigpackView):
             # Store DPI for reference
             group.attrs["figure_dpi"] = float(self.fig.dpi)
+            # Store data size for reference
+            group.attrs["data_size"] = len(svg_bytes)
         except Exception as e:
             # If SVG export fails, store error information
-            group.attrs["svg_data"] = ""
+            group.create_dataset(
+                "svg_data",
+                data=np.array([], dtype=np.uint8),
+                dtype=np.uint8,
+                chunks=True,
+                compressor=zarr.Blosc(
+                    cname="zstd", clevel=3, shuffle=zarr.Blosc.SHUFFLE
+                ),
+            )
             group.attrs["error"] = f"Failed to export matplotlib figure: {str(e)}"
             group.attrs["figure_width_inches"] = 6.0
             group.attrs["figure_height_inches"] = 4.0
             group.attrs["figure_dpi"] = 100.0
+            group.attrs["data_size"] = 0

figpack/views/PlotlyFigure.py CHANGED Viewed

@@ -56,5 +56,21 @@ class PlotlyFigure(FigpackView):
         # Convert the plotly figure to a dictionary
         fig_dict = self.fig.to_dict()
-        # Store the figure data as JSON string using custom encoder
-        group.attrs["figure_data"] = json.dumps(fig_dict, cls=CustomJSONEncoder)
+        # Convert figure data to JSON string using custom encoder
+        json_string = json.dumps(fig_dict, cls=CustomJSONEncoder)
+        # Convert JSON string to bytes and store in numpy array
+        json_bytes = json_string.encode("utf-8")
+        json_array = np.frombuffer(json_bytes, dtype=np.uint8)
+        # Store the figure data as compressed array
+        group.create_dataset(
+            "figure_data",
+            data=json_array,
+            dtype=np.uint8,
+            chunks=True,
+            compressor=zarr.Blosc(cname="zstd", clevel=3, shuffle=zarr.Blosc.SHUFFLE),
+        )
+        # Store data size for reference
+        group.attrs["data_size"] = len(json_bytes)

figpack/views/__init__.py CHANGED Viewed

@@ -1,4 +1,5 @@
 from .Box import Box
+from .DataFrame import DataFrame
 from .Gallery import Gallery
 from .GalleryItem import GalleryItem
 from .Image import Image

{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/METADATA RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: figpack
-Version: 0.2.5
+Version: 0.2.7
 Summary: A Python package for creating shareable, interactive visualizations in the browser
 Author-email: Jeremy Magland <jmagland@flatironinstitute.org>
 License: Apache-2.0
@@ -36,6 +36,7 @@ Requires-Dist: spikeinterface; extra == "test"
 Requires-Dist: matplotlib; extra == "test"
 Requires-Dist: plotly; extra == "test"
 Requires-Dist: Pillow; extra == "test"
+Requires-Dist: pandas; extra == "test"
 Provides-Extra: dev
 Requires-Dist: pytest>=7.0; extra == "dev"
 Requires-Dist: pytest-cov>=4.0; extra == "dev"

{figpack-0.2.5.dist-info → figpack-0.2.7.dist-info}/RECORD RENAMED Viewed

@@ -1,53 +1,54 @@
-figpack/__init__.py,sha256=MgpfFlGDmvR6fsmnN1k1RyoeOxl6pBtfaXgvZj1RStY,181
+figpack/__init__.py,sha256=nCb6Q0Xx4-eGvV5pZeidWcrG1X2wYX3V2bhNXOXAvTo,181
 figpack/cli.py,sha256=xWF7J2BxUqOLvPu-Kje7Q6oGukTroXsLq8WN8vJgyw0,8321
 figpack/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-figpack/core/_bundle_utils.py,sha256=PIBVce4SXZyNTKpXsoEKlHbY7QUFRMBLwSECmJn0INE,1878
-figpack/core/_save_figure.py,sha256=9fn37xxZgSBQVOHaKuzsPRMgD2pcibuJ1jkjhTVv4ks,1002
+figpack/core/_bundle_utils.py,sha256=JBZh2LJyu0oYHQBBVw5fF3uUNQJY_2bxVf6V7CN10FM,1884
+figpack/core/_save_figure.py,sha256=52ny-m1ThGgxY4ZgMn7m33n8A2OCyezj8H8TMvw0Y8Q,1043
 figpack/core/_server_manager.py,sha256=BTLeZtSbaJtAmtslAfgvp9C-SV0aJnn4WCpUJzd1Mlg,10997
-figpack/core/_show_view.py,sha256=fwd6o6K0IHnlLDRMvo-dwQ_zrHs9bkAFqZJpID22Tso,5044
-figpack/core/_upload_bundle.py,sha256=hseJDKe2s7fO8siWpAGuwGDniOlOvPJ5Jksql6SVMug,14192
+figpack/core/_show_view.py,sha256=-5HT1MYSeVuEoaL3RNNyoCjYsZy4Jy9XLjljUqLuvV4,5146
+figpack/core/_upload_bundle.py,sha256=54hdWayJJdRZdx7N9V2aH_X33KkR6hImMjN6tkBTLi8,14894
 figpack/core/_view_figure.py,sha256=o1x1I2VKFrp2W_TStUS3fQblRW8AvGbu7Uy7MgVjofA,4186
 figpack/core/config.py,sha256=oOR7SlP192vuFhYlS-h14HnG-kd_3gaz0vshXch2RNc,173
-figpack/core/figpack_view.py,sha256=NMinVYTByDG_JrplxyGNvPalN-XLnQNNhnwIsT4km1Q,6099
-figpack/figpack-gui-dist/index.html,sha256=Iir-EDyhLfsZDZ3m0oGeB-N1AjXtIAC68lu3rOx2WKo,486
-figpack/figpack-gui-dist/assets/index-Cmae55E4.css,sha256=Yg0apcYehJwQvSQIUH13S7tsfqWQDevpJsAho0dDf0g,5499
-figpack/figpack-gui-dist/assets/index-CrYQmIda.js,sha256=3wyvEZye-j_IBlv5lBP4qCBY9-a6-sJ6inh0ZeTHDjA,1594728
-figpack/figpack-gui-dist/assets/neurosift-logo-CLsuwLMO.png,sha256=g5m-TwrGh5f6-9rXtWV-znH4B0nHgc__0GWclRDLUHs,9307
+figpack/core/figpack_view.py,sha256=peJFkoP6HIqyNATzyucxAIq9HuCnK7SRO_-gE_rbEvg,6130
+figpack/figpack-figure-dist/index.html,sha256=oIpc8fQvHp6xW9SGsqyqJg7kYImJlKrWDDGkoMPFfEk,486
+figpack/figpack-figure-dist/assets/index-CTBd5_Gw.js,sha256=5cp20fBzUQGAXUpWZPBrNQsHe5VnE0oCeXnL_d5sdNM,1602680
+figpack/figpack-figure-dist/assets/index-Cmae55E4.css,sha256=Yg0apcYehJwQvSQIUH13S7tsfqWQDevpJsAho0dDf0g,5499
+figpack/figpack-figure-dist/assets/neurosift-logo-CLsuwLMO.png,sha256=g5m-TwrGh5f6-9rXtWV-znH4B0nHgc__0GWclRDLUHs,9307
 figpack/franklab/__init__.py,sha256=HkehqGImJE_sE2vbPDo-HbgtEYaMICb9-230xTYvRTU,56
 figpack/franklab/views/TrackAnimation.py,sha256=3Jv1Ri4FIwTyqNahinqhHsBH1Bv_iZrEGx12w6diJ2M,5636
 figpack/franklab/views/__init__.py,sha256=XXZ9QJLh9KAeeLgKbi6ogYOyfTgHP-N6o3u981NFwx8,116
 figpack/spike_sorting/__init__.py,sha256=09njqh-oFaCTdZUsc4HAOFTliUYV9DClddfZ0Q_dm0I,61
 figpack/spike_sorting/views/AutocorrelogramItem.py,sha256=qHmvIdHpbfVA_utPb5N2oP3hSP2cGnlT8VLaxOXV4UM,738
-figpack/spike_sorting/views/Autocorrelograms.py,sha256=43EgKHvUmXUA9QSOJQZiTeLHq_kKW43Ku3FIH7ZjfM8,3323
+figpack/spike_sorting/views/Autocorrelograms.py,sha256=6MXOYJKUNEhJokiyOs8SGJVF9U9N6sHuQNYz7IEssqc,3677
 figpack/spike_sorting/views/AverageWaveforms.py,sha256=mvMkS3wf6MpI95tlGqKxBjxZlHqJr4aqG7SZvHigIsI,5193
 figpack/spike_sorting/views/CrossCorrelogramItem.py,sha256=uSd0i2hupteuILi_aKp7bYPYpL_PdC3CUDRMOEKUEM0,880
-figpack/spike_sorting/views/CrossCorrelograms.py,sha256=gqPXbEgg-GE3NCJQT2bahp1ITSW33F3q9ZuJRGrR68M,4061
+figpack/spike_sorting/views/CrossCorrelograms.py,sha256=OGQq_5t_T1zq4eFCpuTAvUIhZQu7ef7LVexKNdByMvo,4415
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