figpack 0.2.35__py3-none-any.whl → 0.2.36__py3-none-any.whl

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Files changed (26) hide show
  1. figpack/__init__.py +1 -1
  2. figpack/cli.py +64 -2
  3. figpack/core/_bundle_utils.py +6 -6
  4. figpack/core/_file_handler.py +1 -1
  5. figpack/core/_save_figure.py +6 -6
  6. figpack/core/_server_manager.py +10 -3
  7. figpack/core/_show_view.py +1 -1
  8. figpack/core/_upload_bundle.py +16 -10
  9. figpack/core/_view_figure.py +15 -10
  10. figpack/core/extension_view.py +8 -4
  11. figpack/core/figpack_extension.py +1 -1
  12. figpack/core/figpack_view.py +22 -12
  13. figpack/core/zarr.py +2 -2
  14. figpack/figpack-figure-dist/assets/{index-DXkrNeMu.js → index-Bt8OPETP.js} +3 -3
  15. figpack/figpack-figure-dist/index.html +1 -1
  16. figpack/views/Box.py +2 -2
  17. figpack/views/Image.py +1 -2
  18. figpack/views/PlotlyExtension/PlotlyExtension.py +12 -12
  19. figpack/views/Spectrogram.py +2 -0
  20. figpack/views/TimeseriesGraph.py +17 -13
  21. {figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/METADATA +22 -1
  22. {figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/RECORD +26 -26
  23. {figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/WHEEL +0 -0
  24. {figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/entry_points.txt +0 -0
  25. {figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/licenses/LICENSE +0 -0
  26. {figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/top_level.txt +0 -0
figpack/figpack-figure-dist/index.html CHANGED
@@ -9,7 +9,7 @@
9
9
  // Allow script injection from trusted domains (see src/main.tsx)
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  window.script_injection_allowed_domains = ['https://manage.figpack.org', 'https://figpack.org'];
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  </script>
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- <script type="module" crossorigin src="./assets/index-DXkrNeMu.js"></script>
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+ <script type="module" crossorigin src="./assets/index-Bt8OPETP.js"></script>
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  <link rel="stylesheet" crossorigin href="./assets/index-V5m_wCvw.css">
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  </head>
15
15
  <body>
figpack/views/Box.py CHANGED
@@ -2,7 +2,7 @@
2
2
  Box view for figpack - a layout container that handles other views
3
3
  """
4
4
 
5
- from typing import Any, Dict, List, Literal, Optional
5
+ from typing import List, Literal, Optional
6
6
 
7
7
  from ..core.figpack_view import FigpackView
8
8
  from ..core.zarr import Group
@@ -21,7 +21,7 @@ class Box(FigpackView):
21
21
  show_titles: bool = True,
22
22
  items: List[LayoutItem],
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23
  title: Optional[str] = None,
24
- ):
24
+ ) -> None:
25
25
  """
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  Initialize a Box layout view
27
27
 
figpack/views/Image.py CHANGED
@@ -5,7 +5,6 @@ Image view for figpack - displays PNG and JPG images
5
5
  from typing import Union
6
6
 
7
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  import numpy as np
8
- import zarr
9
8
 
10
9
  from ..core.figpack_view import FigpackView
11
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  from ..core.zarr import Group
@@ -16,7 +15,7 @@ class Image(FigpackView):
16
15
  An image visualization component for PNG and JPG files
17
16
  """
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17
 
19
- def __init__(self, image_path_or_data: Union[str, bytes]):
18
+ def __init__(self, image_path_or_data: Union[str, bytes]) -> None:
20
19
  """
21
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  Initialize an Image view
22
21
 
figpack/views/PlotlyExtension/PlotlyExtension.py CHANGED
@@ -55,15 +55,15 @@ class PlotlyFigure(figpack.ExtensionView):
55
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  class CustomJSONEncoder(json.JSONEncoder):
56
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  """Custom JSON encoder that handles numpy arrays and datetime objects"""
57
57
 
58
- def default(self, obj):
59
- if isinstance(obj, np.ndarray):
60
- return obj.tolist()
61
- elif isinstance(obj, (np.integer, np.floating)):
62
- return obj.item()
63
- elif isinstance(obj, (datetime, date)):
64
- return obj.isoformat()
65
- elif isinstance(obj, np.datetime64):
66
- return str(obj)
67
- elif hasattr(obj, "isoformat"): # Handle other datetime-like objects
68
- return obj.isoformat()
69
- return super().default(obj)
58
+ def default(self, o):
59
+ if isinstance(o, np.ndarray):
60
+ return o.tolist()
61
+ elif isinstance(o, (np.integer, np.floating)):
62
+ return o.item()
63
+ elif isinstance(o, (datetime, date)):
64
+ return o.isoformat()
65
+ elif isinstance(o, np.datetime64):
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+ return str(o)
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+ elif hasattr(o, "isoformat"): # Handle other datetime-like objects
68
+ return o.isoformat()
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+ return super().default(o)
figpack/views/Spectrogram.py CHANGED
@@ -62,12 +62,14 @@ class Spectrogram(FigpackView):
62
62
 
63
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  # Store frequency information
64
64
  if uniform_specified:
65
+ assert frequency_delta_hz is not None, "Frequency delta must be provided"
65
66
  assert frequency_delta_hz > 0, "Frequency delta must be positive"
66
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  self.uniform_frequencies = True
67
68
  self.frequency_min_hz = frequency_min_hz
68
69
  self.frequency_delta_hz = frequency_delta_hz
69
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  self.frequencies = None
70
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  else:
72
+ assert frequencies is not None, "Frequencies array must be provided"
71
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  assert (
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  len(frequencies) == data.shape[1]
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  ), f"Number of frequencies ({len(frequencies)}) must match data frequency dimension ({data.shape[1]})"
figpack/views/TimeseriesGraph.py CHANGED
@@ -3,7 +3,7 @@ Views module for figpack - contains visualization components
3
3
  """
4
4
 
5
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  import math
6
- from typing import Any, Dict, List, Optional, Union
6
+ from typing import Any, Dict, List, Optional, Tuple, Union
7
7
 
8
8
  import numpy as np
9
9
 
@@ -26,7 +26,7 @@ class TimeseriesGraph(FigpackView):
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  hide_nav_toolbar: bool = False,
27
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  hide_time_axis_labels: bool = False,
28
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  y_label: str = "",
29
- ):
29
+ ) -> None:
30
30
  """
31
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  Initialize a TimeseriesGraph
32
32
 
@@ -54,8 +54,8 @@ class TimeseriesGraph(FigpackView):
54
54
  self,
55
55
  *,
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  name: str,
57
- t: np.ndarray,
58
- y: np.ndarray,
57
+ t: Union[np.ndarray, List[float]],
58
+ y: Union[np.ndarray, List[float]],
59
59
  color: str = "blue",
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  width: float = 1.0,
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  dash: Optional[List[float]] = None,
@@ -241,7 +241,7 @@ class TGLineSeries:
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  color: str,
242
242
  width: float,
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  dash: Optional[List[float]],
244
- ):
244
+ ) -> None:
245
245
  assert t.ndim == 1, "Time array must be 1-dimensional"
246
246
  assert y.ndim == 1, "Y array must be 1-dimensional"
247
247
  assert len(t) == len(y), "Time and Y arrays must have the same length"
@@ -274,7 +274,7 @@ class TGMarkerSeries:
274
274
  color: str,
275
275
  radius: float,
276
276
  shape: str,
277
- ):
277
+ ) -> None:
278
278
  assert t.ndim == 1, "Time array must be 1-dimensional"
279
279
  assert y.ndim == 1, "Y array must be 1-dimensional"
280
280
  assert len(t) == len(y), "Time and Y arrays must have the same length"
@@ -309,7 +309,7 @@ class TGIntervalSeries:
309
309
  t_end: np.ndarray,
310
310
  color: str,
311
311
  alpha: float,
312
- ):
312
+ ) -> None:
313
313
  assert t_start.ndim == 1, "Start time array must be 1-dimensional"
314
314
  assert t_end.ndim == 1, "End time array must be 1-dimensional"
315
315
  assert len(t_start) == len(
@@ -352,7 +352,7 @@ class TGUniformSeries:
352
352
  channel_spacing: Optional[float] = None,
353
353
  auto_channel_spacing: Optional[float] = None,
354
354
  timestamps_for_inserting_nans: Optional[np.ndarray] = None,
355
- ):
355
+ ) -> None:
356
356
  assert sampling_frequency_hz > 0, "Sampling frequency must be positive"
357
357
 
358
358
  # Handle both 1D and 2D data
@@ -392,7 +392,11 @@ class TGUniformSeries:
392
392
  )
393
393
  rms_estimate = mad / 0.6745 # Convert MAD to RMS estimate
394
394
  channel_spacing = auto_channel_spacing * np.nanmedian(rms_estimate)
395
- if channel_spacing <= 0 or np.isnan(channel_spacing):
395
+ if (
396
+ channel_spacing is None
397
+ or (channel_spacing <= 0)
398
+ or np.isnan(channel_spacing)
399
+ ):
396
400
  channel_spacing = 1.0 # Fallback to default spacing if estimate fails
397
401
  self.channel_spacing = channel_spacing
398
402
 
@@ -437,7 +441,7 @@ class TGUniformSeries:
437
441
  # Prepare downsampled arrays for efficient rendering
438
442
  self.downsampled_data = self._compute_downsampled_data()
439
443
 
440
- def _compute_downsampled_data(self) -> dict:
444
+ def _compute_downsampled_data(self) -> Dict[int, np.ndarray]:
441
445
  """
442
446
  Compute downsampled arrays at power-of-4 factors using a vectorized
443
447
  min/max pyramid with NaN padding for partial bins.
@@ -512,8 +516,8 @@ class TGUniformSeries:
512
516
  return downsampled
513
517
 
514
518
  def _calculate_optimal_chunk_size(
515
- self, shape: tuple, target_size_mb: float = 5.0
516
- ) -> tuple:
519
+ self, shape: Tuple[int, ...], target_size_mb: float = 5.0
520
+ ) -> Tuple[int, ...]:
517
521
  """
518
522
  Calculate optimal chunk size for Zarr storage targeting ~5MB per chunk
519
523
 
@@ -610,7 +614,7 @@ def insert_nans_based_on_timestamps(
610
614
  start_time_sec: float,
611
615
  sampling_frequency_hz: float,
612
616
  timestamps: np.ndarray,
613
- ):
617
+ ) -> np.ndarray:
614
618
  end_timestamps = timestamps[-1]
615
619
  ret_length = int((end_timestamps - start_time_sec) * sampling_frequency_hz) + 1
616
620
 
{figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: figpack
3
- Version: 0.2.35
3
+ Version: 0.2.36
4
4
  Summary: A Python package for creating shareable, interactive visualizations in the browser
5
5
  Author-email: Jeremy Magland <jmagland@flatironinstitute.org>
6
6
  License: Apache-2.0
@@ -114,6 +114,27 @@ graph.show(open_in_browser=True, title="Quick Start Example")
114
114
 
115
115
  Apache-2.0
116
116
 
117
+ ## Citation
118
+
119
+ If you use figpack in your research, please cite it:
120
+
121
+ [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.17419621.svg)](https://doi.org/10.5281/zenodo.17419621)
122
+
123
+ ```bibtex
124
+ @software{magland_figpack_2025,
125
+ author = {Magland, Jeremy},
126
+ title = {figpack},
127
+ year = 2025,
128
+ publisher = {Zenodo},
129
+ doi = {10.5281/zenodo.17419621},
130
+ url = {https://doi.org/10.5281/zenodo.17419621}
131
+ }
132
+ ```
133
+
134
+ Or in APA format:
135
+
136
+ > Magland, J. (2025). figpack (Version 0.2.36) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.17419621
137
+
117
138
  ## Contributing
118
139
 
119
140
  Visit the [GitHub repository](https://github.com/flatironinstitute/figpack) for issues, contributions, and the latest updates.
{figpack-0.2.35.dist-info → figpack-0.2.36.dist-info}/RECORD RENAMED
@@ -1,49 +1,49 @@
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  figpack/extensions.py,sha256=mILB4_F1RHkca4I7t88zh74IX8VCmfT7XFZZT4XYdNw,13009
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  figpack/views/Splitter.py,sha256=BR2L-8aqicTubS1rSzsQ3XnhoJcX5GcfEnVWtEWEs0w,2016
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  figpack/views/TabLayout.py,sha256=AqdHPLcP2-caWjxbkC8r8m60z8n_eyZrIBGOOPSVNCs,1908
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  figpack/views/__init__.py,sha256=eZVhNCRRUIYtXou__k2tfNjPKyrc576whfZsVFagofY,709
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  figpack/views/PlotlyExtension/__init__.py,sha256=80Wy1mDMWyagjuR99ECxJePIYpRQ6TSyHkB0uZoBZ_0,70
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