figpack 0.2.2__py3-none-any.whl → 0.2.4__py3-none-any.whl

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Files changed (17) hide show
  1. figpack/__init__.py +1 -1
  2. figpack/core/_server_manager.py +9 -3
  3. figpack/core/_show_view.py +23 -5
  4. figpack/core/_upload_bundle.py +21 -10
  5. figpack/core/config.py +2 -0
  6. figpack/core/figpack_view.py +37 -3
  7. figpack/figpack-gui-dist/assets/{index-DUR9Dmwh.js → index-CuFseOGX.js} +67 -67
  8. figpack/figpack-gui-dist/index.html +1 -1
  9. figpack/spike_sorting/views/RasterPlot.py +77 -0
  10. figpack/spike_sorting/views/RasterPlotItem.py +28 -0
  11. figpack/spike_sorting/views/__init__.py +4 -0
  12. {figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/METADATA +1 -1
  13. {figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/RECORD +17 -15
  14. {figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/WHEEL +0 -0
  15. {figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/entry_points.txt +0 -0
  16. {figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/licenses/LICENSE +0 -0
  17. {figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/top_level.txt +0 -0
figpack/figpack-gui-dist/index.html CHANGED
@@ -5,7 +5,7 @@
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  <link rel="icon" type="image/png" href="./assets/neurosift-logo-CLsuwLMO.png" />
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  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
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  <title>figpack figure</title>
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- <script type="module" crossorigin src="./assets/index-DUR9Dmwh.js"></script>
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+ <script type="module" crossorigin src="./assets/index-CuFseOGX.js"></script>
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  <link rel="stylesheet" crossorigin href="./assets/index-Cmae55E4.css">
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  </head>
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  <body>
figpack/spike_sorting/views/RasterPlot.py ADDED
@@ -0,0 +1,77 @@
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+ """
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+ RasterPlot view for figpack - displays multiple raster plots
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+ """
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+
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+ from typing import List
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+ import numpy as np
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+ import zarr
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+
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+ from ...core.figpack_view import FigpackView
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+ from .RasterPlotItem import RasterPlotItem
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+
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+
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+ class RasterPlot(FigpackView):
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+ """
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+ A view that displays multiple raster plots for spike sorting analysis
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+ """
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+
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+ def __init__(
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+ self,
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+ *,
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+ start_time_sec: float,
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+ end_time_sec: float,
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+ plots: List[RasterPlotItem],
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+ height: int = 500,
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+ ):
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+ """
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+ Initialize a RasterPlot view
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+
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+ Args:
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+ start_time_sec: Start time in seconds for the plot range
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+ end_time_sec: End time in seconds for the plot range
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+ plots: List of RasterPlotItem objects
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+ height: Height of the plot in pixels (default: 500)
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+ """
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+ self.start_time_sec = float(start_time_sec)
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+ self.end_time_sec = float(end_time_sec)
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+ self.plots = plots
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+ self.height = height
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+
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+ def _write_to_zarr_group(self, group: zarr.Group) -> None:
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+ """
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+ Write the RasterPlot data to a Zarr group
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+
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+ Args:
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+ group: Zarr group to write data into
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+ """
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+ # Set the view type
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+ group.attrs["view_type"] = "RasterPlot"
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+
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+ # Store view-level attributes
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+ group.attrs["start_time_sec"] = self.start_time_sec
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+ group.attrs["end_time_sec"] = self.end_time_sec
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+ group.attrs["height"] = self.height
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+ group.attrs["num_plots"] = len(self.plots)
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+
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+ # Store metadata for each plot
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+ plot_metadata = []
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+ for i, plot in enumerate(self.plots):
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+ plot_name = f"plot_{i}"
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+
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+ # Store metadata
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+ metadata = {
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+ "name": plot_name,
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+ "unit_id": str(plot.unit_id),
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+ "num_spikes": len(plot.spike_times_sec),
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+ }
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+ plot_metadata.append(metadata)
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+
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+ # Create arrays for this plot
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+ group.create_dataset(
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+ f"{plot_name}/spike_times_sec",
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+ data=plot.spike_times_sec,
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+ dtype=np.float32,
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+ )
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+
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+ # Store the plot metadata
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+ group.attrs["plots"] = plot_metadata
figpack/spike_sorting/views/RasterPlotItem.py ADDED
@@ -0,0 +1,28 @@
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+ """
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+ RasterPlotItem for figpack - represents a single unit's raster plot
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+ """
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+
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+ from typing import Union
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+ import numpy as np
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+
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+
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+ class RasterPlotItem:
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+ """
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+ Represents spike times for a single unit in a raster plot
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+ """
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+
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+ def __init__(
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+ self,
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+ *,
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+ unit_id: Union[str, int],
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+ spike_times_sec: np.ndarray,
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+ ):
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+ """
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+ Initialize a RasterPlotItem
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+
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+ Args:
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+ unit_id: Identifier for the unit
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+ spike_times_sec: Numpy array of spike times in seconds
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+ """
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+ self.unit_id = unit_id
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+ self.spike_times_sec = np.array(spike_times_sec, dtype=np.float32)
figpack/spike_sorting/views/__init__.py CHANGED
@@ -13,6 +13,8 @@ from .UnitsTableRow import UnitsTableRow
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  from .AverageWaveforms import AverageWaveforms
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  from .SpikeAmplitudesItem import SpikeAmplitudesItem
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  from .SpikeAmplitudes import SpikeAmplitudes
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+ from .RasterPlotItem import RasterPlotItem
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+ from .RasterPlot import RasterPlot
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  __all__ = [
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  "AutocorrelogramItem",
@@ -26,4 +28,6 @@ __all__ = [
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  "AverageWaveforms",
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  "SpikeAmplitudesItem",
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  "SpikeAmplitudes",
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+ "RasterPlotItem",
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+ "RasterPlot",
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  ]
{figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: figpack
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- Version: 0.2.2
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+ Version: 0.2.4
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  Summary: A Python package for creating shareable, interactive visualizations in the browser
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  Author-email: Jeremy Magland <jmagland@flatironinstitute.org>
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  License: Apache-2.0
{figpack-0.2.2.dist-info → figpack-0.2.4.dist-info}/RECORD RENAMED
@@ -1,15 +1,15 @@
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- figpack/__init__.py,sha256=BlI-Bj-E91wj4Sbs7MKpLjKuVrld9nLGeiNTSjNHoGw,124
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+ figpack/__init__.py,sha256=9I8fC_RO4PRKHgMbTZqh-HfikC6KBrpKRaaJ4WQUKDg,124
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  figpack/cli.py,sha256=DYV-DxzWnQTMNywW-ZzhlTEFOEIt11rAKdobdBmRQFk,12051
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  figpack/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  figpack/core/_bundle_utils.py,sha256=73E6FinAvrt1QATGncIqyg6JLeiWVmlGF8NOcFyeYSs,1913
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- figpack/core/_server_manager.py,sha256=8uxJftMgJ7EcVXtLo_VQuaiCZIyqgE89yDfCXKEgyeQ,10922
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- figpack/core/_show_view.py,sha256=muuz0jMptAz7Z63kHlQzaBstKDwYWx4aM912xUD7Vrs,4892
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- figpack/core/_upload_bundle.py,sha256=5nVNfHJewhu0oPPrBDkf9pzYj4T7ZyQFyZBgpK2v4qQ,12960
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- figpack/core/config.py,sha256=6EU9CMvzGk9308Xlx8iJ2cIHJV6pqhXyiZGkK2snA4g,108
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- figpack/core/figpack_view.py,sha256=85wb_oom0MSOk7eV8Xm96lOKYo0ggYyQJ_NC4F79qn8,2474
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- figpack/figpack-gui-dist/index.html,sha256=HU8Dv1EzISPzQjibGxDA6tAz7VpzjL6o-HXOPKv4s4E,486
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+ figpack/core/_server_manager.py,sha256=5-OUZ9Np9aKIjkYxGkjKjJKVL44FOydNWHpGuPm_Qs8,11085
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+ figpack/core/_show_view.py,sha256=8OOuicYEvqN3wwuioKpffHChOpH5Gm_G564HArFo1FA,5302
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+ figpack/core/_upload_bundle.py,sha256=lZQHl7pmXD-jQjyCBMN_w79xnHSDgxAx430qeImTyuE,13401
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+ figpack/core/config.py,sha256=oOR7SlP192vuFhYlS-h14HnG-kd_3gaz0vshXch2RNc,173
9
+ figpack/core/figpack_view.py,sha256=h5D67h_71bb1kW3U0yRH34ZZN_4PGr8OwNL1U8fb5fg,4032
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+ figpack/figpack-gui-dist/index.html,sha256=rObLsUTtDMwDG5vpeCsQC94MhnbNsVGjUVw0w7q2dIM,486
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  figpack/figpack-gui-dist/assets/index-Cmae55E4.css,sha256=Yg0apcYehJwQvSQIUH13S7tsfqWQDevpJsAho0dDf0g,5499
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- figpack/figpack-gui-dist/assets/index-DUR9Dmwh.js,sha256=iHbhpBXkfKoDzn-ZDxh2_uktWyzSTwes9gzgdBEM7PU,1590964
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+ figpack/figpack-gui-dist/assets/index-CuFseOGX.js,sha256=wNJFCDKOVSoTMyipnTvnsTRv2tvB3FkxPAmsceAL2W4,1593545
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  figpack/figpack-gui-dist/assets/neurosift-logo-CLsuwLMO.png,sha256=g5m-TwrGh5f6-9rXtWV-znH4B0nHgc__0GWclRDLUHs,9307
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  figpack/franklab/__init__.py,sha256=HkehqGImJE_sE2vbPDo-HbgtEYaMICb9-230xTYvRTU,56
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  figpack/franklab/views/TrackAnimation.py,sha256=3Jv1Ri4FIwTyqNahinqhHsBH1Bv_iZrEGx12w6diJ2M,5636
@@ -20,13 +20,15 @@ figpack/spike_sorting/views/Autocorrelograms.py,sha256=43EgKHvUmXUA9QSOJQZiTeLHq
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  figpack/spike_sorting/views/AverageWaveforms.py,sha256=mvMkS3wf6MpI95tlGqKxBjxZlHqJr4aqG7SZvHigIsI,5193
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  figpack/spike_sorting/views/CrossCorrelogramItem.py,sha256=uSd0i2hupteuILi_aKp7bYPYpL_PdC3CUDRMOEKUEM0,880
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  figpack/spike_sorting/views/CrossCorrelograms.py,sha256=gqPXbEgg-GE3NCJQT2bahp1ITSW33F3q9ZuJRGrR68M,4061
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+ figpack/spike_sorting/views/RasterPlot.py,sha256=gFdfH9SEm-tf8Ptqw4M1Q7IHRytUOULpBZfM2TdMfZQ,2215
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+ figpack/spike_sorting/views/RasterPlotItem.py,sha256=iW7fuDEjSfvf5YMIwrF_6cmKvD76oCigOUMHtGgBsPI,638
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  figpack/spike_sorting/views/SpikeAmplitudes.py,sha256=vQYWdJM-3qu568bcfGDC9k9LW_PgvU8j4tN9QYc08Mo,2665
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  figpack/spike_sorting/views/SpikeAmplitudesItem.py,sha256=j5Na-diY-vRUAPu0t0VkyFCSKFnQ_f5HT077mB3Cy8c,1134
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  figpack/spike_sorting/views/UnitSimilarityScore.py,sha256=cJA9MkETos9qHhV1tqgA7SfNEaPo-duXYCE76hSFGnA,948
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  figpack/spike_sorting/views/UnitsTable.py,sha256=kQZvMlnPk8MAMPr3GlL4T3cAvGfSHBbB52jvMJ2-YAU,2173
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  figpack/spike_sorting/views/UnitsTableColumn.py,sha256=zBnuoeILTuiVLDvtcOxqa37E5WlbR12rlwNJUeWXxY4,847
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  figpack/spike_sorting/views/UnitsTableRow.py,sha256=rEb2hMTA_pl2fTW1nOvnGir0ysfNx4uww3aekZzfWjk,720
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- figpack/spike_sorting/views/__init__.py,sha256=WdGhMcptNM5OJ5hG3PXOIyjGRsFcp12DtABocMehVSU,849
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+ figpack/spike_sorting/views/__init__.py,sha256=iRq7xPmyhnQ3GffnPC0GxKGEWnlqXY_8IOxsMqYZ1IM,967
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  figpack/views/Box.py,sha256=TfhPFNtVEq71LCucmWk3XX2WxQLdaeRiWGm5BM0k2l4,2236
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  figpack/views/Image.py,sha256=xbnkmiqlrYD9_BGsQgSGgqXJbvNECTI7iJhLsEd3kSg,2990
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  figpack/views/LayoutItem.py,sha256=wy8DggkIzZpU0F1zFIBceS7HpBb6lu-A3hpYINQzedk,1595
@@ -39,9 +41,9 @@ figpack/views/TabLayout.py,sha256=5g3nmL95PfqgI0naqZXHMwLVo2ebDlGX01Hy9044bUw,18
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  figpack/views/TabLayoutItem.py,sha256=xmHA0JsW_6naJze4_mQuP_Fy0Nm17p2N7w_AsmVRp8k,880
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  figpack/views/TimeseriesGraph.py,sha256=OAaCjO8fo86u_gO_frNfRGxng3tczxGDGKcJEvZo3rE,7469
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  figpack/views/__init__.py,sha256=8y4KdRtrdDF0-xtQQkj4k_d8Ajk44Q7myztl3StdZcU,407
42
- figpack-0.2.2.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- figpack-0.2.2.dist-info/METADATA,sha256=vbtrTDAXwFUDxLwYY_7DsjhXY6gHjMvl3r_5UH8Ectk,5886
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- figpack-0.2.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- figpack-0.2.2.dist-info/entry_points.txt,sha256=l6d3siH2LxXa8qJGbjAqpIZtI5AkMSyDeoRDCzdrUto,45
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- figpack-0.2.2.dist-info/top_level.txt,sha256=lMKGaC5xWmAYBx9Ac1iMokm42KFnJFjmkP2ldyvOo-c,8
47
- figpack-0.2.2.dist-info/RECORD,,
44
+ figpack-0.2.4.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
45
+ figpack-0.2.4.dist-info/METADATA,sha256=6sTrCsnt0haWZvUyuQdXXajQU8fyKtEtX0yFYN2JJ0U,5886
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+ figpack-0.2.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ figpack-0.2.4.dist-info/entry_points.txt,sha256=l6d3siH2LxXa8qJGbjAqpIZtI5AkMSyDeoRDCzdrUto,45
48
+ figpack-0.2.4.dist-info/top_level.txt,sha256=lMKGaC5xWmAYBx9Ac1iMokm42KFnJFjmkP2ldyvOo-c,8
49
+ figpack-0.2.4.dist-info/RECORD,,