figpack-spike-sorting 0.1.2__py3-none-any.whl → 0.1.4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (16) hide show
  1. figpack_spike_sorting/__init__.py +1 -1
  2. figpack_spike_sorting/figpack_spike_sorting.js +41 -53
  3. figpack_spike_sorting/views/Autocorrelograms.py +2 -2
  4. figpack_spike_sorting/views/AverageWaveforms.py +2 -2
  5. figpack_spike_sorting/views/CrossCorrelograms.py +2 -2
  6. figpack_spike_sorting/views/RasterPlot.py +2 -2
  7. figpack_spike_sorting/views/SortingCuration.py +2 -2
  8. figpack_spike_sorting/views/SpikeAmplitudes.py +6 -5
  9. figpack_spike_sorting/views/UnitLocations.py +2 -2
  10. figpack_spike_sorting/views/UnitMetricsGraph.py +2 -2
  11. figpack_spike_sorting/views/UnitsTable.py +2 -2
  12. {figpack_spike_sorting-0.1.2.dist-info → figpack_spike_sorting-0.1.4.dist-info}/METADATA +1 -1
  13. figpack_spike_sorting-0.1.4.dist-info/RECORD +25 -0
  14. figpack_spike_sorting-0.1.2.dist-info/RECORD +0 -25
  15. {figpack_spike_sorting-0.1.2.dist-info → figpack_spike_sorting-0.1.4.dist-info}/WHEEL +0 -0
  16. {figpack_spike_sorting-0.1.2.dist-info → figpack_spike_sorting-0.1.4.dist-info}/top_level.txt +0 -0
figpack_spike_sorting/views/Autocorrelograms.py CHANGED
@@ -71,14 +71,14 @@ class Autocorrelograms(figpack.ExtensionView):
71
71
  view = Autocorrelograms(autocorrelograms=ac_items)
72
72
  return view
73
73
 
74
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
74
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
75
75
  """
76
76
  Write the Autocorrelograms data to a Zarr group
77
77
 
78
78
  Args:
79
79
  group: Zarr group to write data into
80
80
  """
81
- super()._write_to_zarr_group(group)
81
+ super().write_to_zarr_group(group)
82
82
 
83
83
  # Store the number of autocorrelograms
84
84
  num_autocorrelograms = len(self.autocorrelograms)
figpack_spike_sorting/views/AverageWaveforms.py CHANGED
@@ -100,14 +100,14 @@ class AverageWaveforms(figpack.ExtensionView):
100
100
  view = AverageWaveforms(average_waveforms=average_waveform_items)
101
101
  return view
102
102
 
103
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
103
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
104
104
  """
105
105
  Write the AverageWaveforms data to a Zarr group
106
106
 
107
107
  Args:
108
108
  group: Zarr group to write data into
109
109
  """
110
- super()._write_to_zarr_group(group)
110
+ super().write_to_zarr_group(group)
111
111
 
112
112
  # Store the number of average waveforms
113
113
  group.attrs["num_average_waveforms"] = len(self.average_waveforms)
figpack_spike_sorting/views/CrossCorrelograms.py CHANGED
@@ -80,14 +80,14 @@ class CrossCorrelograms(figpack.ExtensionView):
80
80
  view = CrossCorrelograms(cross_correlograms=cc_items, hide_unit_selector=False)
81
81
  return view
82
82
 
83
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
83
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
84
84
  """
85
85
  Write the CrossCorrelograms data to a Zarr group
86
86
 
87
87
  Args:
88
88
  group: Zarr group to write data into
89
89
  """
90
- super()._write_to_zarr_group(group)
90
+ super().write_to_zarr_group(group)
91
91
 
92
92
  # Set view properties
93
93
  if self.hide_unit_selector is not None:
figpack_spike_sorting/views/RasterPlot.py CHANGED
@@ -109,12 +109,12 @@ class RasterPlot(figpack.ExtensionView):
109
109
  else:
110
110
  return view
111
111
 
112
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
112
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
113
113
  """
114
114
  Args:
115
115
  group: Zarr group to write data into
116
116
  """
117
- super()._write_to_zarr_group(group)
117
+ super().write_to_zarr_group(group)
118
118
 
119
119
  # Store view parameters
120
120
  group.attrs["start_time_sec"] = self.start_time_sec
figpack_spike_sorting/views/SortingCuration.py CHANGED
@@ -26,12 +26,12 @@ class SortingCuration(figpack.ExtensionView):
26
26
  self.default_label_options = default_label_options
27
27
  self.curation = curation
28
28
 
29
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
29
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
30
30
  """
31
31
  Args:
32
32
  group: Zarr group to write data into
33
33
  """
34
- super()._write_to_zarr_group(group)
34
+ super().write_to_zarr_group(group)
35
35
 
36
36
  # Store view parameters
37
37
  group.attrs["default_label_options"] = self.default_label_options
figpack_spike_sorting/views/SpikeAmplitudes.py CHANGED
@@ -10,6 +10,7 @@ from .SpikeAmplitudesItem import SpikeAmplitudesItem
10
10
  from .UnitsTable import UnitsTable, UnitsTableColumn, UnitsTableRow
11
11
 
12
12
  import figpack
13
+ import figpack.views as fpv
13
14
  from ..spike_sorting_extension import spike_sorting_extension
14
15
 
15
16
 
@@ -104,25 +105,25 @@ class SpikeAmplitudes(figpack.ExtensionView):
104
105
  columns=columns,
105
106
  rows=rows,
106
107
  )
107
- layout = Box(
108
+ layout = fpv.Box(
108
109
  direction="horizontal",
109
110
  items=[
110
- LayoutItem(view=units_table, max_size=150, title="Units"),
111
- LayoutItem(view=view, title="Spike Amplitudes"),
111
+ fpv.LayoutItem(view=units_table, max_size=150, title="Units"),
112
+ fpv.LayoutItem(view=view, title="Spike Amplitudes"),
112
113
  ],
113
114
  )
114
115
  return layout
115
116
  else:
116
117
  return view
117
118
 
118
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
119
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
119
120
  """
120
121
  Write the SpikeAmplitudes data to a Zarr group using unified storage format
121
122
 
122
123
  Args:
123
124
  group: Zarr group to write data into
124
125
  """
125
- super()._write_to_zarr_group(group)
126
+ super().write_to_zarr_group(group)
126
127
 
127
128
  # Store view parameters
128
129
  group.attrs["start_time_sec"] = self.start_time_sec
figpack_spike_sorting/views/UnitLocations.py CHANGED
@@ -51,14 +51,14 @@ class UnitLocations(figpack.ExtensionView):
51
51
  self.channel_locations = channel_locations
52
52
  self.disable_auto_rotate = disable_auto_rotate
53
53
 
54
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
54
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
55
55
  """
56
56
  Write the UnitLocations data to a Zarr group
57
57
 
58
58
  Args:
59
59
  group: Zarr group to write data into
60
60
  """
61
- super()._write_to_zarr_group(group)
61
+ super().write_to_zarr_group(group)
62
62
 
63
63
  channel_locations = {}
64
64
  for channel_id, loc in self.channel_locations.items():
figpack_spike_sorting/views/UnitMetricsGraph.py CHANGED
@@ -101,14 +101,14 @@ class UnitMetricsGraph(figpack.ExtensionView):
101
101
  self.metrics = metrics
102
102
  self.height = height
103
103
 
104
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
104
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
105
105
  """
106
106
  Write the UnitMetricsGraph data to a Zarr group
107
107
 
108
108
  Args:
109
109
  group: Zarr group to write data into
110
110
  """
111
- super()._write_to_zarr_group(group)
111
+ super().write_to_zarr_group(group)
112
112
 
113
113
  # Set view properties
114
114
  if self.height is not None:
figpack_spike_sorting/views/UnitsTable.py CHANGED
@@ -44,14 +44,14 @@ class UnitsTable(figpack.ExtensionView):
44
44
  self.similarity_scores = similarity_scores or []
45
45
  self.height = height
46
46
 
47
- def _write_to_zarr_group(self, group: figpack.Group) -> None:
47
+ def write_to_zarr_group(self, group: figpack.Group) -> None:
48
48
  """
49
49
  Write the UnitsTable data to a Zarr group
50
50
 
51
51
  Args:
52
52
  group: Zarr group to write data into
53
53
  """
54
- super()._write_to_zarr_group(group)
54
+ super().write_to_zarr_group(group)
55
55
 
56
56
  # Set view properties
57
57
  if self.height is not None:
{figpack_spike_sorting-0.1.2.dist-info → figpack_spike_sorting-0.1.4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: figpack_spike_sorting
3
- Version: 0.1.2
3
+ Version: 0.1.4
4
4
  Summary: Spike Sorting specific extension for figpack
5
5
  Home-page: https://github.com/flatironinstitute/figpack
6
6
  Author: figpack contributors
figpack_spike_sorting-0.1.4.dist-info/RECORD ADDED
@@ -0,0 +1,25 @@
1
+ figpack_spike_sorting/__init__.py,sha256=F4mjEwIZvZptuP_x9XUrJ2JRDXGDgiOv57FcpW3Gq-0,100
2
+ figpack_spike_sorting/figpack_spike_sorting.js,sha256=U5oI2Bdt_b-39nWZDlbXxesXxaKu584ZfhuBwFfAIws,662213
3
+ figpack_spike_sorting/spike_sorting_extension.py,sha256=ugpk8hDsO4RmyQRNjfhB4Pw5p10FmhQeu3koBynSPHU,755
4
+ figpack_spike_sorting/style.css,sha256=R4pcnrpSMpOsBn7X1t-JBP8ODktsc5e8o95Fl_0LVps,3208
5
+ figpack_spike_sorting/views/AutocorrelogramItem.py,sha256=qHmvIdHpbfVA_utPb5N2oP3hSP2cGnlT8VLaxOXV4UM,738
6
+ figpack_spike_sorting/views/Autocorrelograms.py,sha256=-vyBayJPnJsGY6fMXKOJyA4qfmKlUBngTXCYzali4sY,3742
7
+ figpack_spike_sorting/views/AverageWaveforms.py,sha256=mqbQeAbunvMnMU1vS7_u4nDThBoCrvaciRuoBdyvWD8,5218
8
+ figpack_spike_sorting/views/CrossCorrelogramItem.py,sha256=uSd0i2hupteuILi_aKp7bYPYpL_PdC3CUDRMOEKUEM0,880
9
+ figpack_spike_sorting/views/CrossCorrelograms.py,sha256=uDq27k2ixpc3yQVvzpZzogXbq2uCIPKoKCcTRlPBG6w,4490
10
+ figpack_spike_sorting/views/RasterPlot.py,sha256=Rk0tj2gniGm3EtUmyV4LHLZ-N4-PTwDAZd0iC_K3_Rw,9908
11
+ figpack_spike_sorting/views/RasterPlotItem.py,sha256=iW7fuDEjSfvf5YMIwrF_6cmKvD76oCigOUMHtGgBsPI,638
12
+ figpack_spike_sorting/views/SortingCuration.py,sha256=J3p9vrhbnRt05qeihZk_i6EBWDcTGYs293WVW_9qLSk,1243
13
+ figpack_spike_sorting/views/SpikeAmplitudes.py,sha256=lpc_bQrX5kisvc__3FyBTchKyqRhAijAWrrZvLyR7u4,13216
14
+ figpack_spike_sorting/views/SpikeAmplitudesItem.py,sha256=j5Na-diY-vRUAPu0t0VkyFCSKFnQ_f5HT077mB3Cy8c,1134
15
+ figpack_spike_sorting/views/UnitLocations.py,sha256=K18oJFnKshn0fZ9NtgKXcWGroJGc_OaF3f_ZEEInZPA,2336
16
+ figpack_spike_sorting/views/UnitMetricsGraph.py,sha256=8YZo2-5d-RHKSfyUKYAfDvW9hZDCTzmnUAyb3fPWo3I,3373
17
+ figpack_spike_sorting/views/UnitSimilarityScore.py,sha256=cJA9MkETos9qHhV1tqgA7SfNEaPo-duXYCE76hSFGnA,948
18
+ figpack_spike_sorting/views/UnitsTable.py,sha256=8aluJ2tCnwsFOLbjbJDyY2z1ml9VK7Sz5_bxdRUAeDI,2758
19
+ figpack_spike_sorting/views/UnitsTableColumn.py,sha256=zBnuoeILTuiVLDvtcOxqa37E5WlbR12rlwNJUeWXxY4,847
20
+ figpack_spike_sorting/views/UnitsTableRow.py,sha256=rEb2hMTA_pl2fTW1nOvnGir0ysfNx4uww3aekZzfWjk,720
21
+ figpack_spike_sorting/views/__init__.py,sha256=m7XRK-rCsqXXbNtilncHsUzDK09j3gWeTqfYWUs9_jM,1316
22
+ figpack_spike_sorting-0.1.4.dist-info/METADATA,sha256=ImLsPylyUhpeeZ0KvDaQGqIj-rGxGwHDtBQzbOQdUPo,1218
23
+ figpack_spike_sorting-0.1.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
24
+ figpack_spike_sorting-0.1.4.dist-info/top_level.txt,sha256=CAkWrQc1wGK5laYDkT2GBjGgAuNwWNXKodTQlTcpxus,22
25
+ figpack_spike_sorting-0.1.4.dist-info/RECORD,,
figpack_spike_sorting-0.1.2.dist-info/RECORD DELETED
@@ -1,25 +0,0 @@
1
- figpack_spike_sorting/__init__.py,sha256=mrQmwb0pdTVRVtmrsgX728eZfAu_G1U2lpS532M1X9Q,100
2
- figpack_spike_sorting/figpack_spike_sorting.js,sha256=DtTJ9DxjUOIkxeFULc4q65bc1ce751aeRiIiQ5CDZYc,705056
3
- figpack_spike_sorting/spike_sorting_extension.py,sha256=ugpk8hDsO4RmyQRNjfhB4Pw5p10FmhQeu3koBynSPHU,755
4
- figpack_spike_sorting/style.css,sha256=R4pcnrpSMpOsBn7X1t-JBP8ODktsc5e8o95Fl_0LVps,3208
5
- figpack_spike_sorting/views/AutocorrelogramItem.py,sha256=qHmvIdHpbfVA_utPb5N2oP3hSP2cGnlT8VLaxOXV4UM,738
6
- figpack_spike_sorting/views/Autocorrelograms.py,sha256=zNeYM7tVXhBCaN-OWtMaIUJZUdAKh6tEidQTZ1E7N8A,3744
7
- figpack_spike_sorting/views/AverageWaveforms.py,sha256=tHYeURvJFyKpxpPpMc12jeQBxm9iGFzHos2G92Z0kIk,5220
8
- figpack_spike_sorting/views/CrossCorrelogramItem.py,sha256=uSd0i2hupteuILi_aKp7bYPYpL_PdC3CUDRMOEKUEM0,880
9
- figpack_spike_sorting/views/CrossCorrelograms.py,sha256=begMIpv5KG6ycH5fS85SPpXxmjZZHoIYGNcH8qBw0S0,4492
10
- figpack_spike_sorting/views/RasterPlot.py,sha256=MyLes4QpYs28C3IPq48-lo9_NU6cYVhO8QErgcZsy_4,9910
11
- figpack_spike_sorting/views/RasterPlotItem.py,sha256=iW7fuDEjSfvf5YMIwrF_6cmKvD76oCigOUMHtGgBsPI,638
12
- figpack_spike_sorting/views/SortingCuration.py,sha256=zGzdfrOZ-Dg8828dbRKTDSRw7mRzjddCn2CD3tDajNE,1245
13
- figpack_spike_sorting/views/SpikeAmplitudes.py,sha256=dH5Dpgiys8WwdhESesxnuGQsZjKDMbs8eSL1YklnsL8,13178
14
- figpack_spike_sorting/views/SpikeAmplitudesItem.py,sha256=j5Na-diY-vRUAPu0t0VkyFCSKFnQ_f5HT077mB3Cy8c,1134
15
- figpack_spike_sorting/views/UnitLocations.py,sha256=N7YRAqvtShkVcNPnLu4gIIy2HqgGco5MJRr7YLoTaL0,2338
16
- figpack_spike_sorting/views/UnitMetricsGraph.py,sha256=TOxqrBHrJLiOcD4-JdvgYXZYdUOm3D4nMMUayPfOAMk,3375
17
- figpack_spike_sorting/views/UnitSimilarityScore.py,sha256=cJA9MkETos9qHhV1tqgA7SfNEaPo-duXYCE76hSFGnA,948
18
- figpack_spike_sorting/views/UnitsTable.py,sha256=dNWBcdN9aSmTdNF1fNZKXLcPwweLzbYnWGhxR9q9BZI,2760
19
- figpack_spike_sorting/views/UnitsTableColumn.py,sha256=zBnuoeILTuiVLDvtcOxqa37E5WlbR12rlwNJUeWXxY4,847
20
- figpack_spike_sorting/views/UnitsTableRow.py,sha256=rEb2hMTA_pl2fTW1nOvnGir0ysfNx4uww3aekZzfWjk,720
21
- figpack_spike_sorting/views/__init__.py,sha256=m7XRK-rCsqXXbNtilncHsUzDK09j3gWeTqfYWUs9_jM,1316
22
- figpack_spike_sorting-0.1.2.dist-info/METADATA,sha256=5jEoyq4mlvpIJIHJT17j07hADVCjyCXMz7ldIJev9YI,1218
23
- figpack_spike_sorting-0.1.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
24
- figpack_spike_sorting-0.1.2.dist-info/top_level.txt,sha256=CAkWrQc1wGK5laYDkT2GBjGgAuNwWNXKodTQlTcpxus,22
25
- figpack_spike_sorting-0.1.2.dist-info/RECORD,,