figpack-spike-sorting 0.1.1__py3-none-any.whl → 0.1.3__py3-none-any.whl

figpack_spike_sorting/style.css

@@ -1 +1 @@
-.VerticalToolbar{overflow:hidden;position:absolute}.HorizontalToolbar{display:flex;justify-content:center;align-items:center;overflow:hidden;margin:auto}.SortableTableWidget .MuiTableCell-root{padding:1px 0;font-size:12px;border:solid 1px #f0f0f0}.SortableTableWidget .MuiTableRow-root.selectedRow{background-color:#b5d1ff}.SortableTableWidget .MuiTableRow-root.currentRow{background-color:#95b1df}.SortCaretSpan{font-size:16px;color:gray;padding-left:3px;padding-right:5px;padding-top:2px}.SortableTableWidget .unitLabel{width:10px;height:10px;position:relative;display:inline-block}.SortableTableWidget .SortableTableCheckbox{padding:1px}.NiceTable .MuiTableCell-root{padding:5px}.NiceTable .MuiIconButton-root{padding:1px}
+.VerticalToolbar{overflow:hidden;position:absolute}.HorizontalToolbar{display:flex;justify-content:center;align-items:center;overflow:hidden;margin:auto}.compact-table-container{font-family:-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Helvetica Neue,sans-serif;font-size:28px;line-height:1;overflow:auto;background:#fff}.compact-table{width:100%;border-collapse:collapse;border-spacing:0;font-size:28px;table-layout:auto;background:#fff}.compact-table-header{background:linear-gradient(135deg,#f8f9fa,#e9ecef);border:1px solid #d1d5db;border-bottom:2px solid #9ca3af;padding:1px 3px;font-size:28px;font-weight:600;text-align:left;height:16px;line-height:1;white-space:nowrap;position:sticky;top:0;z-index:10;color:#374151;text-transform:uppercase;letter-spacing:.025em;user-select:none;transition:all .15s ease}.compact-table-header:hover{background:linear-gradient(135deg,#e9ecef,#dee2e6);transform:translateY(-1px);box-shadow:0 2px 4px #0000001a}.compact-table-cell{border-right:1px solid #e5e7eb;border-bottom:1px solid #f3f4f6;padding:0 3px;font-size:28px;height:14px;line-height:1;vertical-align:middle;white-space:nowrap;overflow:hidden;text-overflow:ellipsis;max-width:100px;color:#1f2937;transition:background-color .1s ease}.compact-table-row{height:14px;transition:all .1s ease}.compact-table-row:nth-child(2n){background-color:#fafafa}.compact-table-row:hover{background-color:#f0f9ff!important;transform:scale(1.002);box-shadow:0 1px 3px #0000000d}.compact-table-row.selected{background:linear-gradient(135deg,#dbeafe,#bfdbfe)!important;border-left:3px solid #3b82f6}.compact-table-row.current{background:linear-gradient(135deg,#fef3c7,#fde68a)!important;border-left:3px solid #f59e0b;font-weight:600}.sort-indicator{font-size:7px;margin-left:1px;color:#6b7280;font-weight:700;text-shadow:0 1px 1px rgba(255,255,255,.8)}.compact-table input[type=checkbox]{transform:scale(.7);margin:0;padding:0;accent-color:#3b82f6;cursor:pointer}.compact-table-cell>span{font-size:28px!important;line-height:1!important}.compact-table-cell>div{font-size:28px!important;line-height:1!important}.compact-table .unitLabel{width:6px;height:6px;display:inline-block;margin-right:2px;border-radius:1px;box-shadow:0 1px 2px #0000001a}.compact-table *{font-size:28px!important;line-height:1!important}.compact-table-cell:last-child{border-right:none}.compact-table-container{box-shadow:0 1px 3px #0000001a;border-radius:4px;overflow:hidden}.compact-table input[type=checkbox]:checked{background-color:#3b82f6;border-color:#3b82f6}.SortableTableWidget .MuiTableCell-root,.SortableTableWidget .MuiTableRow-root,.SortableTableWidget .MuiTable-root,.SortableTableWidget *{font-size:28px!important;line-height:1!important;padding:0 3px!important;height:14px!important;min-height:14px!important;max-height:14px!important}.compact-table-container::-webkit-scrollbar{width:8px;height:8px}.compact-table-container::-webkit-scrollbar-track{background:#f1f5f9;border-radius:4px}.compact-table-container::-webkit-scrollbar-thumb{background:#cbd5e1;border-radius:4px}.compact-table-container::-webkit-scrollbar-thumb:hover{background:#94a3b8}.NiceTable .MuiTableCell-root{padding:5px}.NiceTable .MuiIconButton-root{padding:1px}

figpack_spike_sorting/views/SortingCuration.py

@@ -0,0 +1,44 @@
+from typing import List
+import json
+import numpy as np
+
+import figpack
+
+from ..spike_sorting_extension import spike_sorting_extension
+
+
+class SortingCuration(figpack.ExtensionView):
+    def __init__(
+        self,
+        *,
+        default_label_options: List[str] = ["mua", "good", "noise"],
+        curation: dict = {},
+    ):
+        """
+        Initialize a SortingCuration view
+
+        Args:
+            default_label_options: List of default label options for the view
+        """
+        super().__init__(
+            extension=spike_sorting_extension, view_type="spike_sorting.SortingCuration"
+        )
+        self.default_label_options = default_label_options
+        self.curation = curation
+
+    def _write_to_zarr_group(self, group: figpack.Group) -> None:
+        """
+        Args:
+            group: Zarr group to write data into
+        """
+        super()._write_to_zarr_group(group)
+
+        # Store view parameters
+        group.attrs["default_label_options"] = self.default_label_options
+
+        curation_json = json.dumps(self.curation).encode("utf-8")
+        curation_array = np.frombuffer(curation_json, dtype=np.uint8)
+        group.create_dataset(
+            "curation",
+            data=curation_array,
+        )

figpack_spike_sorting/views/SpikeAmplitudes.py

@@ -10,6 +10,7 @@ from .SpikeAmplitudesItem import SpikeAmplitudesItem
 from .UnitsTable import UnitsTable, UnitsTableColumn, UnitsTableRow
 
 import figpack
+import figpack.views as fpv
 from ..spike_sorting_extension import spike_sorting_extension
 
 
@@ -104,11 +105,11 @@ class SpikeAmplitudes(figpack.ExtensionView):
                 columns=columns,
                 rows=rows,
             )
-            layout = Box(
+            layout = fpv.Box(
                 direction="horizontal",
                 items=[
-                    LayoutItem(view=units_table, max_size=150, title="Units"),
-                    LayoutItem(view=view, title="Spike Amplitudes"),
+                    fpv.LayoutItem(view=units_table, max_size=150, title="Units"),
+                    fpv.LayoutItem(view=view, title="Spike Amplitudes"),
                 ],
             )
             return layout

figpack_spike_sorting/views/__init__.py

@@ -19,6 +19,7 @@ from .UnitMetricsGraph import (
     UnitMetricsGraphMetric,
     UnitMetricsGraphUnit,
 )
+from .SortingCuration import SortingCuration
 
 __all__ = [
     "Autocorrelograms",
@@ -40,4 +41,5 @@ __all__ = [
     "UnitMetricsGraph",
     "UnitMetricsGraphMetric",
     "UnitMetricsGraphUnit",
+    "SortingCuration",
 ]

{figpack_spike_sorting-0.1.1.dist-info → figpack_spike_sorting-0.1.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: figpack_spike_sorting
-Version: 0.1.1
+Version: 0.1.3
 Summary: Spike Sorting specific extension for figpack
 Home-page: https://github.com/flatironinstitute/figpack
 Author: figpack contributors

{figpack_spike_sorting-0.1.1.dist-info → figpack_spike_sorting-0.1.3.dist-info}/RECORD

@@ -1,7 +1,7 @@
-figpack_spike_sorting/__init__.py,sha256=yFZ0ILkrRk7vq9ZLGz8deON3XnXp3HMi40qBdK9BYfk,100
-figpack_spike_sorting/figpack_spike_sorting.js,sha256=29zXjIQZQUvwLmuD1g4heugJ1987YOt6gr-a1FSsUxI,775729
+figpack_spike_sorting/__init__.py,sha256=3nkrc3nbdf89NB5MXiyimDhKuzB_pIivkRLvznP_7Ok,100
+figpack_spike_sorting/figpack_spike_sorting.js,sha256=5Wf8uZ00M3hSGCnn3x-9rBjX4coNTUeo5mlCqJstcWc,662213
 figpack_spike_sorting/spike_sorting_extension.py,sha256=ugpk8hDsO4RmyQRNjfhB4Pw5p10FmhQeu3koBynSPHU,755
-figpack_spike_sorting/style.css,sha256=O9PbGwIks7Qd1XH6y11fJGdprJL1u6z4HRudU2Npl4I,726
+figpack_spike_sorting/style.css,sha256=R4pcnrpSMpOsBn7X1t-JBP8ODktsc5e8o95Fl_0LVps,3208
 figpack_spike_sorting/views/AutocorrelogramItem.py,sha256=qHmvIdHpbfVA_utPb5N2oP3hSP2cGnlT8VLaxOXV4UM,738
 figpack_spike_sorting/views/Autocorrelograms.py,sha256=zNeYM7tVXhBCaN-OWtMaIUJZUdAKh6tEidQTZ1E7N8A,3744
 figpack_spike_sorting/views/AverageWaveforms.py,sha256=tHYeURvJFyKpxpPpMc12jeQBxm9iGFzHos2G92Z0kIk,5220
@@ -9,7 +9,8 @@ figpack_spike_sorting/views/CrossCorrelogramItem.py,sha256=uSd0i2hupteuILi_aKp7b
 figpack_spike_sorting/views/CrossCorrelograms.py,sha256=begMIpv5KG6ycH5fS85SPpXxmjZZHoIYGNcH8qBw0S0,4492
 figpack_spike_sorting/views/RasterPlot.py,sha256=MyLes4QpYs28C3IPq48-lo9_NU6cYVhO8QErgcZsy_4,9910
 figpack_spike_sorting/views/RasterPlotItem.py,sha256=iW7fuDEjSfvf5YMIwrF_6cmKvD76oCigOUMHtGgBsPI,638
-figpack_spike_sorting/views/SpikeAmplitudes.py,sha256=dH5Dpgiys8WwdhESesxnuGQsZjKDMbs8eSL1YklnsL8,13178
+figpack_spike_sorting/views/SortingCuration.py,sha256=zGzdfrOZ-Dg8828dbRKTDSRw7mRzjddCn2CD3tDajNE,1245
+figpack_spike_sorting/views/SpikeAmplitudes.py,sha256=xwINU41xq2w1jdR4PXuBJj66IlD7E8j1rPTgvCPQfyE,13218
 figpack_spike_sorting/views/SpikeAmplitudesItem.py,sha256=j5Na-diY-vRUAPu0t0VkyFCSKFnQ_f5HT077mB3Cy8c,1134
 figpack_spike_sorting/views/UnitLocations.py,sha256=N7YRAqvtShkVcNPnLu4gIIy2HqgGco5MJRr7YLoTaL0,2338
 figpack_spike_sorting/views/UnitMetricsGraph.py,sha256=TOxqrBHrJLiOcD4-JdvgYXZYdUOm3D4nMMUayPfOAMk,3375
@@ -17,8 +18,8 @@ figpack_spike_sorting/views/UnitSimilarityScore.py,sha256=cJA9MkETos9qHhV1tqgA7S
 figpack_spike_sorting/views/UnitsTable.py,sha256=dNWBcdN9aSmTdNF1fNZKXLcPwweLzbYnWGhxR9q9BZI,2760
 figpack_spike_sorting/views/UnitsTableColumn.py,sha256=zBnuoeILTuiVLDvtcOxqa37E5WlbR12rlwNJUeWXxY4,847
 figpack_spike_sorting/views/UnitsTableRow.py,sha256=rEb2hMTA_pl2fTW1nOvnGir0ysfNx4uww3aekZzfWjk,720
-figpack_spike_sorting/views/__init__.py,sha256=32LVR983RlvbGblG2akBJuj4ZEIvVgqmap5OoJAAALA,1248
-figpack_spike_sorting-0.1.1.dist-info/METADATA,sha256=nTJtfd3iXJ_1us8HEvsu1EQLNr3tjms_9KSvmNRUQHQ,1218
-figpack_spike_sorting-0.1.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-figpack_spike_sorting-0.1.1.dist-info/top_level.txt,sha256=CAkWrQc1wGK5laYDkT2GBjGgAuNwWNXKodTQlTcpxus,22
-figpack_spike_sorting-0.1.1.dist-info/RECORD,,
+figpack_spike_sorting/views/__init__.py,sha256=m7XRK-rCsqXXbNtilncHsUzDK09j3gWeTqfYWUs9_jM,1316
+figpack_spike_sorting-0.1.3.dist-info/METADATA,sha256=MC2VfNyTJvQQsrZV2JNYCuPWKRDW4QNEHmucvkGJYbg,1218
+figpack_spike_sorting-0.1.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+figpack_spike_sorting-0.1.3.dist-info/top_level.txt,sha256=CAkWrQc1wGK5laYDkT2GBjGgAuNwWNXKodTQlTcpxus,22
+figpack_spike_sorting-0.1.3.dist-info/RECORD,,