figops 0.17.4__py3-none-any.whl

figops-0.17.4.dist-info/METADATA

@@ -0,0 +1,229 @@
+Metadata-Version: 2.4
+Name: figops
+Version: 0.17.4
+Summary: Reproducible plotting and analysis pipeline for research projects
+Author: Choemun Yeong
+Maintainer: Moonweave Research
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/Moonweave-Research/figops
+Project-URL: Repository, https://github.com/Moonweave-Research/figops
+Project-URL: Issues, https://github.com/Moonweave-Research/figops/issues
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+Requires-Dist: matplotlib<4,>=3.7
+Requires-Dist: numpy<3,>=1.24
+Requires-Dist: pandas<3,>=2.0
+Requires-Dist: pyyaml<7,>=6.0
+Requires-Dist: scipy<2,>=1.10
+Requires-Dist: statsmodels<1,>=0.14
+Requires-Dist: openpyxl<4,>=3.1
+Requires-Dist: rich<15,>=13.0
+Requires-Dist: markdown>=3.10.2
+Requires-Dist: pymdown-extensions>=10.21.3
+Requires-Dist: python-pptx>=1.0.2
+Requires-Dist: svgutils>=0.3.4
+Requires-Dist: lxml>=6.1.0
+Requires-Dist: adjusttext<2,>=1.3
+Provides-Extra: io
+Requires-Dist: pyarrow>=14.0; extra == "io"
+Requires-Dist: tables>=3.9; extra == "io"
+Dynamic: license-file
+
+# FigOps
+
+FigOps helps research teams turn raw analysis outputs into reproducible,
+publication-ready figures. It is meant to be boring in the best way: one config,
+one command, traceable inputs, repeatable outputs.
+
+The short version:
+
+```bash
+figops --help
+figops-mcp --smoke
+```
+
+If those two commands work, the package is installed and the MCP surface is alive.
+
+## Current status
+
+- **Installable package:** yes. The wheel is built and smoke-tested like an external user would run it.
+- **Current distribution name:** `figops`.
+- **Current commands:** `figops` and `figops-mcp` (legacy aliases `graphhub` / `graphhub-mcp` remain for compatibility).
+- **GitHub Release assets:** yes, for users who already have repository access.
+- **Public PyPI:** not uploaded yet. The package policy is now Apache-2.0, and the next gate is TestPyPI/PyPI account publishing.
+
+This means the built package is ready for public package-distribution checks, while the full repository can remain private until repo-only docs/tests/internal style packs are separated. Check [LICENSE](./LICENSE) and [NOTICE](./NOTICE) before redistributing.
+
+## Install from the current GitHub release
+
+For internal users with repository access:
+
+```bash
+gh release download v0.17.4 --repo Moonweave-Research/figops --pattern "*.whl" --dir dist-release
+python -m pip install dist-release/figops-0.17.4-py3-none-any.whl
+figops-mcp --smoke
+```
+
+For local development from a clone:
+
+```bash
+python hub_uv.py run python orchestrator.py --list-projects
+python hub_uv.py run python -m pytest tests/test_runtime_paths.py -q
+```
+
+`hub_uv.py` keeps the Python runtime outside the repo so the working tree does
+not get polluted with local virtualenv state.
+
+## What it does
+
+FigOps coordinates the work around a research figure:
+
+1. read a project's `project_config.yaml`,
+2. validate declared data contracts,
+3. run analysis scripts when needed,
+4. render figures and diagrams,
+5. apply journal/presentation styling,
+6. write provenance so the run can be audited later.
+
+It is designed around a simple rule: **data is the API**. A figure should be
+traceable back to declared inputs, scripts, config, environment, and output files.
+
+## Daily commands
+
+```bash
+# Choose a configured project interactively
+figops
+
+# List configured projects
+figops --list-projects
+
+# Run the full pipeline for one project
+figops --project "ProjectName" --step all
+
+# Re-render figures only
+figops --project "ProjectName" --step plot
+
+# Re-render diagrams only
+figops --project "ProjectName" --step diagrams
+
+# Force a clean rerun
+figops --project "ProjectName" --step all --force
+```
+
+From a source checkout, the equivalent command is `python orchestrator.py ...` or
+`python hub_uv.py run python orchestrator.py ...`.
+
+## Starting a new project
+
+```bash
+figops --init --project "new_project_folder"
+```
+
+That creates a scaffold with a `project_config.yaml`, script folders, and output
+folders. The config is the contract between your data, analysis, and figures.
+
+A minimal project shape looks like this:
+
+```yaml
+project:
+  name: "Example Study"
+
+visual_style:
+  target_format: nature
+  font_scale: 1.0
+  profile: baseline
+
+pipeline:
+  analysis:
+    - script: "hub_scripts/analyze.R"
+      lang: R
+      cache: true
+
+figures:
+  - id: Fig1
+    script: "hub_scripts/plot.py"
+    output: "results/figures/Fig1.png"
+    cache: true
+```
+
+## MCP smoke check
+
+The package exposes a Model Context Protocol server entry point:
+
+```bash
+figops-mcp --smoke
+```
+
+A healthy smoke response looks like:
+
+```json
+{"status": "ok", "health_status": "ok", "tool_surface": "figops_mcp"}
+```
+
+Use this before wiring the package into an agent or external MCP client.
+
+## Quality gates
+
+The repository currently verifies release candidates with these checks:
+
+```bash
+uv build
+python scripts/package_metadata_smoke.py
+python scripts/public_package_surface.py
+python scripts/consumer_install_smoke.py
+uv run --with twine python -m twine check dist/*
+python hub_uv.py run python -m pytest -q
+python hub_uv.py run ruff check .
+```
+
+After the GitHub Release is created and the wheel/sdist are uploaded, maintainers
+also run:
+
+```bash
+python scripts/github_release_asset_smoke.py
+```
+
+`python scripts/check_public_release.py` may still block for repo-only private docs/tests.
+For PyPI, the manual Trusted Publishing workflow runs the guarded uploader before publishing, so distribution policy, LICENSE/NOTICE, and the built wheel/sdist package surface are checked first.
+
+## When something goes wrong
+
+- `project_config.yaml not found`
+  Run `figops --init --project "<project>"` or move into a configured project.
+
+- `Project directory not found`
+  Run `figops --list-projects` and copy the exact configured name.
+
+- Strict lockfile errors
+  `--strict-lock` is for reproducibility checks. For a quick local render, rerun
+  without strict mode; for release or audit work, add/fix the lockfiles.
+
+- Google Drive files feel stuck
+  Let Drive finish syncing, then rerun. The hub also has a prefetch layer for
+  declared inputs, but it cannot repair a broken Drive login/session.
+
+## Repo map
+
+- `orchestrator.py` — CLI entry point.
+- `hub_core/` — config parsing, validation, cache, provenance, process execution, MCP logic.
+- `plotting/` — reusable plotting helpers.
+- `themes/` — journal and presentation style presets.
+- `scripts/` — release, packaging, and distribution checks.
+- `tests/` — regression and contract tests.
+- `docs/packaging/pypi-readiness.md` — current packaging and public-release boundary.
+
+## What is next
+
+The next public-distribution step is TestPyPI, then PyPI, through the manual Trusted Publishing workflow:
+
+1. keep `figops` as the public PyPI name unless a final product review changes it,
+2. rebuild wheel/sdist from a clean tree,
+3. confirm package artifacts exclude private docs/tests/research markers,
+4. make `scripts/guarded_pypi_upload.py --repository testpypi` pass in dry-run mode,
+5. run `publish.yml` for TestPyPI, install-check from TestPyPI, then run `publish.yml` for PyPI.
+
+The working checklist is in
+[`docs/packaging/public-release-clearance.md`](./docs/packaging/public-release-clearance.md), with exact publishing setup in
+[`docs/packaging/trusted-publishing.md`](./docs/packaging/trusted-publishing.md).

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figops-0.17.4.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: setuptools (82.0.1)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

figops-0.17.4.dist-info/entry_points.txt

@@ -0,0 +1,5 @@
+[console_scripts]
+figops = orchestrator:main
+figops-mcp = figops_mcp_server:main
+graphhub = orchestrator:main
+graphhub-mcp = graphhub_mcp_server:main

figops-0.17.4.dist-info/licenses/LICENSE

@@ -0,0 +1,202 @@
+
+                                 Apache License
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+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
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+      "You" (or "Your") shall mean an individual or Legal Entity
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+   limitations under the License.

figops-0.17.4.dist-info/licenses/NOTICE

@@ -0,0 +1,7 @@
+FigOps
+Copyright 2026 Choemun Yeong
+
+Licensed under the Apache License, Version 2.0.
+
+This product includes software developed for reproducible research figure
+operations and plotting workflows.

figops-0.17.4.dist-info/top_level.txt

@@ -0,0 +1,7 @@
+figops_mcp_server
+graphhub_mcp_server
+hub_core
+hub_uv
+orchestrator
+plotting
+themes

figops_mcp_server.py

@@ -0,0 +1,9 @@
+#!/usr/bin/env python3
+"""FigOps MCP stdio server entry point."""
+
+from __future__ import annotations
+
+from graphhub_mcp_server import main
+
+if __name__ == "__main__":
+    raise SystemExit(main())

graphhub_mcp_server.py

@@ -0,0 +1,61 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import argparse
+import json
+
+from hub_core.doctor import format_doctor_report, run_doctor
+from hub_core.logging import configure_logging
+from hub_core.mcp import FigOpsMCPServer, McpServerConfig, run_stdio_server
+
+
+def _run_smoke(config: McpServerConfig) -> int:
+    server = FigOpsMCPServer(config=config)
+    health = server.call_tool("figops.health", {})["structuredContent"]
+    styles = server.call_tool("figops.list_styles", {})["structuredContent"]
+    payload = {
+        "status": "ok" if health.get("status") in {"ok", "warning"} and styles.get("status") == "ok" else "error",
+        "health_status": health.get("status"),
+        "style_format_count": styles.get("style_format_count") or len(styles.get("target_formats", [])),
+        "tool_surface": "figops_mcp",
+    }
+    print(json.dumps(payload, ensure_ascii=False, sort_keys=True))
+    return 0 if payload["status"] == "ok" else 1
+
+
+def main() -> int:
+    parser = argparse.ArgumentParser(description="FigOps MCP stdio server")
+    parser.add_argument("--smoke", action="store_true", help="Run a read-only MCP health/style smoke check")
+    subparsers = parser.add_subparsers(dest="command")
+    doctor_parser = subparsers.add_parser("doctor", help="Run a FigOps environment readiness check")
+    doctor_parser.add_argument("--json", action="store_true", help="Emit structured doctor output for agents")
+    parser.add_argument("--hub-path", help="Explicit FigOps repository path")
+    parser.add_argument("--research-root", help="Explicit research/project discovery root")
+    parser.add_argument("--runtime-root", help="Explicit MCP runtime root")
+    parser.add_argument(
+        "--enable-write-tools",
+        action="store_true",
+        help="Enable MCP tools that write files or execute render jobs",
+    )
+    args = parser.parse_args()
+    configure_logging()
+    config = McpServerConfig.from_env().overlay(
+        hub_path=args.hub_path,
+        research_root=args.research_root,
+        runtime_root=args.runtime_root,
+        write_tools_enabled=True if args.enable_write_tools else None,
+    )
+    if args.smoke:
+        return _run_smoke(config)
+    if args.command == "doctor":
+        report = run_doctor(config)
+        if args.json:
+            print(json.dumps(report, ensure_ascii=False, sort_keys=True))
+        else:
+            print(format_doctor_report(report))
+        return 0 if report["ready"] else 1
+    return run_stdio_server(FigOpsMCPServer(config=config, require_initialize=True))
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())