fhir-reada 0.1.1__py3-none-any.whl → 0.1.2__py3-none-any.whl

fhir_reada/__init__.py

@@ -1 +1 @@
-__version__ = "0.1.1"
+__version__ = "0.1.2"

fhir_reada/deid_utils.py

@@ -1,4 +1,18 @@
 from hashlib import sha256
+from datetime import datetime
+
+def get_birth_year_and_age(birth_date_str):
+    try:
+        birth = datetime.strptime(birth_date_str, "%Y-%m-%d")
+        today = datetime.today()
+        age = today.year - birth.year - ((today.month, today.day) < (birth.month, birth.day))
+        birth_year = birth.year
+        return (
+            "90+" if age >= 90 else str(birth_year),
+            "90+" if age >= 90 else str(age)
+        )
+    except Exception:
+        return ("UNKNOWN", "UNKNOWN")
 
 def deidentify_patient_bundle(bundle):
     patient = bundle["patient"]
@@ -6,12 +20,15 @@ def deidentify_patient_bundle(bundle):
     observations = bundle["observations"]
 
     patient_id = patient.get("id", "")
-    pseudo_id = sha256(patient_id.encode()).hexdigest()[:10]
+    pseudo_id = sha256(patient_id.encode()).hexdigest()
+
+    birth_year, age = get_birth_year_and_age(patient.get("birthDate"))
 
     return {
         "id": pseudo_id,
         "gender": patient.get("gender"),
-        "birthDate": patient.get("birthDate"),
+        "birthYear": birth_year,
+        "age": age,
         "conditions": "; ".join(conditions) if conditions else "None",
         "observations": "; ".join(observations) if observations else "None"
     }

{fhir_reada-0.1.1.dist-info → fhir_reada-0.1.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: fhir-reada
-Version: 0.1.1
+Version: 0.1.2
 Summary: A FHIR cohort extractor and de-identification tool for clinical research.
 Author-email: Tobenna Oduah <tjlite81@gmail.com>
 License: MIT

fhir_reada-0.1.2.dist-info/RECORD

@@ -0,0 +1,12 @@
+fhir_reada/__init__.py,sha256=K5SiDdEGYMpdqXThrqwTqECJJBOQNTQDrnpc2K5mzKs,21
+fhir_reada/cli.py,sha256=ee-qaFbC9rnRinxDY55CsrAN2jtRApMh_OcU4yyYMVg,1749
+fhir_reada/cohort_builder.py,sha256=92XcLJJZfAZWdUVJBCZ3fPlPNY6AZ-8GPOQSEixO9YM,970
+fhir_reada/deid_utils.py,sha256=O-W4vGH6XUAnZXsXYfqgz5Nu89mZ78zJbkj6CSKL-rg,1157
+fhir_reada/exporter.py,sha256=FU19ArPFrcHadm7oL4T0h1tGwbyB2XjwnTM4ctAVdNI,360
+fhir_reada/fhir_connector.py,sha256=CDGWwj6Pxw2g-4YU3DgftmQp0lwzmyx_6FAbN32GZNk,1423
+fhir_reada-0.1.2.dist-info/LICENSE,sha256=sb_e78Fe7Dk6yq7gU0w6bytrGEinwYKP527HSihtlio,1111
+fhir_reada-0.1.2.dist-info/METADATA,sha256=fiDNbsi5mN0rokMpMtoCz8kJzVdvPn4uONLGHW7iYN4,2204
+fhir_reada-0.1.2.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
+fhir_reada-0.1.2.dist-info/entry_points.txt,sha256=WGQ4P92SzyjFFTLUZlo6lSqQumr4MvfF05eOXhpgcpQ,51
+fhir_reada-0.1.2.dist-info/top_level.txt,sha256=vJum_GABH4sFXP_XWV47DC7L7Yun_8h21vM5L8pdZ_0,11
+fhir_reada-0.1.2.dist-info/RECORD,,

fhir_reada-0.1.1.dist-info/RECORD

@@ -1,12 +0,0 @@
-fhir_reada/__init__.py,sha256=8oAxKUG747GUokmxjkrWejyJa5yPNEsoJDlXxoedxTw,21
-fhir_reada/cli.py,sha256=ee-qaFbC9rnRinxDY55CsrAN2jtRApMh_OcU4yyYMVg,1749
-fhir_reada/cohort_builder.py,sha256=92XcLJJZfAZWdUVJBCZ3fPlPNY6AZ-8GPOQSEixO9YM,970
-fhir_reada/deid_utils.py,sha256=ZCNrEUm_oq6VrAgGovAwUaIavvyhOBJrU4XNqHAeghA,577
-fhir_reada/exporter.py,sha256=FU19ArPFrcHadm7oL4T0h1tGwbyB2XjwnTM4ctAVdNI,360
-fhir_reada/fhir_connector.py,sha256=CDGWwj6Pxw2g-4YU3DgftmQp0lwzmyx_6FAbN32GZNk,1423
-fhir_reada-0.1.1.dist-info/LICENSE,sha256=sb_e78Fe7Dk6yq7gU0w6bytrGEinwYKP527HSihtlio,1111
-fhir_reada-0.1.1.dist-info/METADATA,sha256=U8DUGfz8C7cTXqK0qXravIUh0otPMkVwp82Qe6EogCM,2204
-fhir_reada-0.1.1.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
-fhir_reada-0.1.1.dist-info/entry_points.txt,sha256=WGQ4P92SzyjFFTLUZlo6lSqQumr4MvfF05eOXhpgcpQ,51
-fhir_reada-0.1.1.dist-info/top_level.txt,sha256=vJum_GABH4sFXP_XWV47DC7L7Yun_8h21vM5L8pdZ_0,11
-fhir_reada-0.1.1.dist-info/RECORD,,