fastMONAI 0.5.3__py3-none-any.whl → 0.6.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. fastMONAI/__init__.py +1 -1
  2. fastMONAI/_modidx.py +224 -28
  3. fastMONAI/dataset_info.py +329 -47
  4. fastMONAI/external_data.py +1 -1
  5. fastMONAI/utils.py +394 -22
  6. fastMONAI/vision_all.py +3 -2
  7. fastMONAI/vision_augmentation.py +264 -28
  8. fastMONAI/vision_core.py +29 -132
  9. fastMONAI/vision_data.py +6 -6
  10. fastMONAI/vision_inference.py +35 -9
  11. fastMONAI/vision_metrics.py +420 -19
  12. fastMONAI/vision_patch.py +1259 -0
  13. fastMONAI/vision_plot.py +90 -1
  14. {fastmonai-0.5.3.dist-info → fastmonai-0.6.0.dist-info}/METADATA +5 -5
  15. fastmonai-0.6.0.dist-info/RECORD +21 -0
  16. {fastmonai-0.5.3.dist-info → fastmonai-0.6.0.dist-info}/WHEEL +1 -1
  17. fastmonai-0.5.3.dist-info/RECORD +0 -20
  18. {fastmonai-0.5.3.dist-info → fastmonai-0.6.0.dist-info}/entry_points.txt +0 -0
  19. {fastmonai-0.5.3.dist-info → fastmonai-0.6.0.dist-info}/licenses/LICENSE +0 -0
  20. {fastmonai-0.5.3.dist-info → fastmonai-0.6.0.dist-info}/top_level.txt +0 -0
fastMONAI/__init__.py CHANGED
@@ -1 +1 @@
1
- __version__ = "0.5.3"
1
+ __version__ = "0.6.0"
fastMONAI/_modidx.py CHANGED
@@ -12,14 +12,24 @@ d = { 'settings': { 'branch': 'main',
12
12
  'fastMONAI/dataset_info.py'),
13
13
  'fastMONAI.dataset_info.MedDataset._get_data_info': ( 'dataset_info.html#meddataset._get_data_info',
14
14
  'fastMONAI/dataset_info.py'),
15
- 'fastMONAI.dataset_info.MedDataset.get_largest_img_size': ( 'dataset_info.html#meddataset.get_largest_img_size',
16
- 'fastMONAI/dataset_info.py'),
17
- 'fastMONAI.dataset_info.MedDataset.suggestion': ( 'dataset_info.html#meddataset.suggestion',
18
- 'fastMONAI/dataset_info.py'),
15
+ 'fastMONAI.dataset_info.MedDataset._visualize_single_case': ( 'dataset_info.html#meddataset._visualize_single_case',
16
+ 'fastMONAI/dataset_info.py'),
17
+ 'fastMONAI.dataset_info.MedDataset.calculate_target_size': ( 'dataset_info.html#meddataset.calculate_target_size',
18
+ 'fastMONAI/dataset_info.py'),
19
+ 'fastMONAI.dataset_info.MedDataset.get_size_statistics': ( 'dataset_info.html#meddataset.get_size_statistics',
20
+ 'fastMONAI/dataset_info.py'),
21
+ 'fastMONAI.dataset_info.MedDataset.get_suggestion': ( 'dataset_info.html#meddataset.get_suggestion',
22
+ 'fastMONAI/dataset_info.py'),
23
+ 'fastMONAI.dataset_info.MedDataset.get_volume_summary': ( 'dataset_info.html#meddataset.get_volume_summary',
24
+ 'fastMONAI/dataset_info.py'),
19
25
  'fastMONAI.dataset_info.MedDataset.summary': ( 'dataset_info.html#meddataset.summary',
20
26
  'fastMONAI/dataset_info.py'),
27
+ 'fastMONAI.dataset_info.MedDataset.visualize_cases': ( 'dataset_info.html#meddataset.visualize_cases',
28
+ 'fastMONAI/dataset_info.py'),
21
29
  'fastMONAI.dataset_info.get_class_weights': ( 'dataset_info.html#get_class_weights',
22
- 'fastMONAI/dataset_info.py')},
30
+ 'fastMONAI/dataset_info.py'),
31
+ 'fastMONAI.dataset_info.suggest_patch_size': ( 'dataset_info.html#suggest_patch_size',
32
+ 'fastMONAI/dataset_info.py')},
23
33
  'fastMONAI.external_data': { 'fastMONAI.external_data.MURLs': ('external_data.html#murls', 'fastMONAI/external_data.py'),
24
34
  'fastMONAI.external_data._create_nodule_df': ( 'external_data.html#_create_nodule_df',
25
35
  'fastMONAI/external_data.py'),
@@ -81,8 +91,18 @@ d = { 'settings': { 'branch': 'main',
81
91
  'fastMONAI/utils.py'),
82
92
  'fastMONAI.utils.ModelTrackingCallback.extract_all_params': ( 'utils.html#modeltrackingcallback.extract_all_params',
83
93
  'fastMONAI/utils.py'),
94
+ 'fastMONAI.utils._detect_patch_workflow': ('utils.html#_detect_patch_workflow', 'fastMONAI/utils.py'),
95
+ 'fastMONAI.utils._extract_loss_name': ('utils.html#_extract_loss_name', 'fastMONAI/utils.py'),
96
+ 'fastMONAI.utils._extract_model_name': ('utils.html#_extract_model_name', 'fastMONAI/utils.py'),
97
+ 'fastMONAI.utils._extract_patch_config': ('utils.html#_extract_patch_config', 'fastMONAI/utils.py'),
98
+ 'fastMONAI.utils._extract_size_from_transforms': ( 'utils.html#_extract_size_from_transforms',
99
+ 'fastMONAI/utils.py'),
100
+ 'fastMONAI.utils._extract_standard_config': ('utils.html#_extract_standard_config', 'fastMONAI/utils.py'),
101
+ 'fastMONAI.utils.create_mlflow_callback': ('utils.html#create_mlflow_callback', 'fastMONAI/utils.py'),
102
+ 'fastMONAI.utils.load_patch_variables': ('utils.html#load_patch_variables', 'fastMONAI/utils.py'),
84
103
  'fastMONAI.utils.load_variables': ('utils.html#load_variables', 'fastMONAI/utils.py'),
85
104
  'fastMONAI.utils.print_colab_gpu_info': ('utils.html#print_colab_gpu_info', 'fastMONAI/utils.py'),
105
+ 'fastMONAI.utils.store_patch_variables': ('utils.html#store_patch_variables', 'fastMONAI/utils.py'),
86
106
  'fastMONAI.utils.store_variables': ('utils.html#store_variables', 'fastMONAI/utils.py')},
87
107
  'fastMONAI.vision_all': {},
88
108
  'fastMONAI.vision_augmentation': { 'fastMONAI.vision_augmentation.BinaryConverter': ( 'vision_augment.html#binaryconverter',
@@ -99,6 +119,8 @@ d = { 'settings': { 'branch': 'main',
99
119
  'fastMONAI/vision_augmentation.py'),
100
120
  'fastMONAI.vision_augmentation.CustomDictTransform.encodes': ( 'vision_augment.html#customdicttransform.encodes',
101
121
  'fastMONAI/vision_augmentation.py'),
122
+ 'fastMONAI.vision_augmentation.CustomDictTransform.tio_transform': ( 'vision_augment.html#customdicttransform.tio_transform',
123
+ 'fastMONAI/vision_augmentation.py'),
102
124
  'fastMONAI.vision_augmentation.NormalizeIntensity': ( 'vision_augment.html#normalizeintensity',
103
125
  'fastMONAI/vision_augmentation.py'),
104
126
  'fastMONAI.vision_augmentation.NormalizeIntensity.__init__': ( 'vision_augment.html#normalizeintensity.__init__',
@@ -115,6 +137,8 @@ d = { 'settings': { 'branch': 'main',
115
137
  'fastMONAI/vision_augmentation.py'),
116
138
  'fastMONAI.vision_augmentation.PadOrCrop.encodes': ( 'vision_augment.html#padorcrop.encodes',
117
139
  'fastMONAI/vision_augmentation.py'),
140
+ 'fastMONAI.vision_augmentation.PadOrCrop.tio_transform': ( 'vision_augment.html#padorcrop.tio_transform',
141
+ 'fastMONAI/vision_augmentation.py'),
118
142
  'fastMONAI.vision_augmentation.RandomAffine': ( 'vision_augment.html#randomaffine',
119
143
  'fastMONAI/vision_augmentation.py'),
120
144
  'fastMONAI.vision_augmentation.RandomAffine.__init__': ( 'vision_augment.html#randomaffine.__init__',
@@ -125,12 +149,26 @@ d = { 'settings': { 'branch': 'main',
125
149
  'fastMONAI/vision_augmentation.py'),
126
150
  'fastMONAI.vision_augmentation.RandomBiasField.encodes': ( 'vision_augment.html#randombiasfield.encodes',
127
151
  'fastMONAI/vision_augmentation.py'),
152
+ 'fastMONAI.vision_augmentation.RandomBiasField.tio_transform': ( 'vision_augment.html#randombiasfield.tio_transform',
153
+ 'fastMONAI/vision_augmentation.py'),
128
154
  'fastMONAI.vision_augmentation.RandomBlur': ( 'vision_augment.html#randomblur',
129
155
  'fastMONAI/vision_augmentation.py'),
130
156
  'fastMONAI.vision_augmentation.RandomBlur.__init__': ( 'vision_augment.html#randomblur.__init__',
131
157
  'fastMONAI/vision_augmentation.py'),
132
158
  'fastMONAI.vision_augmentation.RandomBlur.encodes': ( 'vision_augment.html#randomblur.encodes',
133
159
  'fastMONAI/vision_augmentation.py'),
160
+ 'fastMONAI.vision_augmentation.RandomBlur.tio_transform': ( 'vision_augment.html#randomblur.tio_transform',
161
+ 'fastMONAI/vision_augmentation.py'),
162
+ 'fastMONAI.vision_augmentation.RandomCutout': ( 'vision_augment.html#randomcutout',
163
+ 'fastMONAI/vision_augmentation.py'),
164
+ 'fastMONAI.vision_augmentation.RandomCutout.__init__': ( 'vision_augment.html#randomcutout.__init__',
165
+ 'fastMONAI/vision_augmentation.py'),
166
+ 'fastMONAI.vision_augmentation.RandomCutout._get_fill_value': ( 'vision_augment.html#randomcutout._get_fill_value',
167
+ 'fastMONAI/vision_augmentation.py'),
168
+ 'fastMONAI.vision_augmentation.RandomCutout.encodes': ( 'vision_augment.html#randomcutout.encodes',
169
+ 'fastMONAI/vision_augmentation.py'),
170
+ 'fastMONAI.vision_augmentation.RandomCutout.tio_transform': ( 'vision_augment.html#randomcutout.tio_transform',
171
+ 'fastMONAI/vision_augmentation.py'),
134
172
  'fastMONAI.vision_augmentation.RandomElasticDeformation': ( 'vision_augment.html#randomelasticdeformation',
135
173
  'fastMONAI/vision_augmentation.py'),
136
174
  'fastMONAI.vision_augmentation.RandomElasticDeformation.__init__': ( 'vision_augment.html#randomelasticdeformation.__init__',
@@ -145,42 +183,72 @@ d = { 'settings': { 'branch': 'main',
145
183
  'fastMONAI/vision_augmentation.py'),
146
184
  'fastMONAI.vision_augmentation.RandomGamma.encodes': ( 'vision_augment.html#randomgamma.encodes',
147
185
  'fastMONAI/vision_augmentation.py'),
186
+ 'fastMONAI.vision_augmentation.RandomGamma.tio_transform': ( 'vision_augment.html#randomgamma.tio_transform',
187
+ 'fastMONAI/vision_augmentation.py'),
148
188
  'fastMONAI.vision_augmentation.RandomGhosting': ( 'vision_augment.html#randomghosting',
149
189
  'fastMONAI/vision_augmentation.py'),
150
190
  'fastMONAI.vision_augmentation.RandomGhosting.__init__': ( 'vision_augment.html#randomghosting.__init__',
151
191
  'fastMONAI/vision_augmentation.py'),
152
192
  'fastMONAI.vision_augmentation.RandomGhosting.encodes': ( 'vision_augment.html#randomghosting.encodes',
153
193
  'fastMONAI/vision_augmentation.py'),
194
+ 'fastMONAI.vision_augmentation.RandomGhosting.tio_transform': ( 'vision_augment.html#randomghosting.tio_transform',
195
+ 'fastMONAI/vision_augmentation.py'),
196
+ 'fastMONAI.vision_augmentation.RandomIntensityScale': ( 'vision_augment.html#randomintensityscale',
197
+ 'fastMONAI/vision_augmentation.py'),
198
+ 'fastMONAI.vision_augmentation.RandomIntensityScale.__init__': ( 'vision_augment.html#randomintensityscale.__init__',
199
+ 'fastMONAI/vision_augmentation.py'),
200
+ 'fastMONAI.vision_augmentation.RandomIntensityScale.encodes': ( 'vision_augment.html#randomintensityscale.encodes',
201
+ 'fastMONAI/vision_augmentation.py'),
154
202
  'fastMONAI.vision_augmentation.RandomMotion': ( 'vision_augment.html#randommotion',
155
203
  'fastMONAI/vision_augmentation.py'),
156
204
  'fastMONAI.vision_augmentation.RandomMotion.__init__': ( 'vision_augment.html#randommotion.__init__',
157
205
  'fastMONAI/vision_augmentation.py'),
158
206
  'fastMONAI.vision_augmentation.RandomMotion.encodes': ( 'vision_augment.html#randommotion.encodes',
159
207
  'fastMONAI/vision_augmentation.py'),
208
+ 'fastMONAI.vision_augmentation.RandomMotion.tio_transform': ( 'vision_augment.html#randommotion.tio_transform',
209
+ 'fastMONAI/vision_augmentation.py'),
160
210
  'fastMONAI.vision_augmentation.RandomNoise': ( 'vision_augment.html#randomnoise',
161
211
  'fastMONAI/vision_augmentation.py'),
162
212
  'fastMONAI.vision_augmentation.RandomNoise.__init__': ( 'vision_augment.html#randomnoise.__init__',
163
213
  'fastMONAI/vision_augmentation.py'),
164
214
  'fastMONAI.vision_augmentation.RandomNoise.encodes': ( 'vision_augment.html#randomnoise.encodes',
165
215
  'fastMONAI/vision_augmentation.py'),
216
+ 'fastMONAI.vision_augmentation.RandomNoise.tio_transform': ( 'vision_augment.html#randomnoise.tio_transform',
217
+ 'fastMONAI/vision_augmentation.py'),
166
218
  'fastMONAI.vision_augmentation.RandomSpike': ( 'vision_augment.html#randomspike',
167
219
  'fastMONAI/vision_augmentation.py'),
168
220
  'fastMONAI.vision_augmentation.RandomSpike.__init__': ( 'vision_augment.html#randomspike.__init__',
169
221
  'fastMONAI/vision_augmentation.py'),
170
222
  'fastMONAI.vision_augmentation.RandomSpike.encodes': ( 'vision_augment.html#randomspike.encodes',
171
223
  'fastMONAI/vision_augmentation.py'),
224
+ 'fastMONAI.vision_augmentation.RandomSpike.tio_transform': ( 'vision_augment.html#randomspike.tio_transform',
225
+ 'fastMONAI/vision_augmentation.py'),
172
226
  'fastMONAI.vision_augmentation.RescaleIntensity': ( 'vision_augment.html#rescaleintensity',
173
227
  'fastMONAI/vision_augmentation.py'),
174
228
  'fastMONAI.vision_augmentation.RescaleIntensity.__init__': ( 'vision_augment.html#rescaleintensity.__init__',
175
229
  'fastMONAI/vision_augmentation.py'),
176
230
  'fastMONAI.vision_augmentation.RescaleIntensity.encodes': ( 'vision_augment.html#rescaleintensity.encodes',
177
231
  'fastMONAI/vision_augmentation.py'),
232
+ 'fastMONAI.vision_augmentation.RescaleIntensity.tio_transform': ( 'vision_augment.html#rescaleintensity.tio_transform',
233
+ 'fastMONAI/vision_augmentation.py'),
178
234
  'fastMONAI.vision_augmentation.ZNormalization': ( 'vision_augment.html#znormalization',
179
235
  'fastMONAI/vision_augmentation.py'),
180
236
  'fastMONAI.vision_augmentation.ZNormalization.__init__': ( 'vision_augment.html#znormalization.__init__',
181
237
  'fastMONAI/vision_augmentation.py'),
182
238
  'fastMONAI.vision_augmentation.ZNormalization.encodes': ( 'vision_augment.html#znormalization.encodes',
183
239
  'fastMONAI/vision_augmentation.py'),
240
+ 'fastMONAI.vision_augmentation.ZNormalization.tio_transform': ( 'vision_augment.html#znormalization.tio_transform',
241
+ 'fastMONAI/vision_augmentation.py'),
242
+ 'fastMONAI.vision_augmentation._TioRandomCutout': ( 'vision_augment.html#_tiorandomcutout',
243
+ 'fastMONAI/vision_augmentation.py'),
244
+ 'fastMONAI.vision_augmentation._TioRandomCutout.__init__': ( 'vision_augment.html#_tiorandomcutout.__init__',
245
+ 'fastMONAI/vision_augmentation.py'),
246
+ 'fastMONAI.vision_augmentation._TioRandomCutout._apply_cutout': ( 'vision_augment.html#_tiorandomcutout._apply_cutout',
247
+ 'fastMONAI/vision_augmentation.py'),
248
+ 'fastMONAI.vision_augmentation._TioRandomCutout.apply_transform': ( 'vision_augment.html#_tiorandomcutout.apply_transform',
249
+ 'fastMONAI/vision_augmentation.py'),
250
+ 'fastMONAI.vision_augmentation._create_ellipsoid_mask': ( 'vision_augment.html#_create_ellipsoid_mask',
251
+ 'fastMONAI/vision_augmentation.py'),
184
252
  'fastMONAI.vision_augmentation.do_pad_or_crop': ( 'vision_augment.html#do_pad_or_crop',
185
253
  'fastMONAI/vision_augmentation.py')},
186
254
  'fastMONAI.vision_core': { 'fastMONAI.vision_core.MedBase': ('vision_core.html#medbase', 'fastMONAI/vision_core.py'),
@@ -202,33 +270,13 @@ d = { 'settings': { 'branch': 'main',
202
270
  'fastMONAI.vision_core.MedImage': ('vision_core.html#medimage', 'fastMONAI/vision_core.py'),
203
271
  'fastMONAI.vision_core.MedMask': ('vision_core.html#medmask', 'fastMONAI/vision_core.py'),
204
272
  'fastMONAI.vision_core.MetaResolver': ('vision_core.html#metaresolver', 'fastMONAI/vision_core.py'),
205
- 'fastMONAI.vision_core.VSCodeProgressCallback': ( 'vision_core.html#vscodeprogresscallback',
206
- 'fastMONAI/vision_core.py'),
207
- 'fastMONAI.vision_core.VSCodeProgressCallback.__init__': ( 'vision_core.html#vscodeprogresscallback.__init__',
208
- 'fastMONAI/vision_core.py'),
209
- 'fastMONAI.vision_core.VSCodeProgressCallback._detect_vscode_environment': ( 'vision_core.html#vscodeprogresscallback._detect_vscode_environment',
210
- 'fastMONAI/vision_core.py'),
211
- 'fastMONAI.vision_core.VSCodeProgressCallback.after_batch': ( 'vision_core.html#vscodeprogresscallback.after_batch',
212
- 'fastMONAI/vision_core.py'),
213
- 'fastMONAI.vision_core.VSCodeProgressCallback.after_fit': ( 'vision_core.html#vscodeprogresscallback.after_fit',
214
- 'fastMONAI/vision_core.py'),
215
- 'fastMONAI.vision_core.VSCodeProgressCallback.after_validate': ( 'vision_core.html#vscodeprogresscallback.after_validate',
216
- 'fastMONAI/vision_core.py'),
217
- 'fastMONAI.vision_core.VSCodeProgressCallback.before_epoch': ( 'vision_core.html#vscodeprogresscallback.before_epoch',
218
- 'fastMONAI/vision_core.py'),
219
- 'fastMONAI.vision_core.VSCodeProgressCallback.before_fit': ( 'vision_core.html#vscodeprogresscallback.before_fit',
220
- 'fastMONAI/vision_core.py'),
221
- 'fastMONAI.vision_core.VSCodeProgressCallback.before_validate': ( 'vision_core.html#vscodeprogresscallback.before_validate',
222
- 'fastMONAI/vision_core.py'),
223
273
  'fastMONAI.vision_core._load_and_preprocess': ( 'vision_core.html#_load_and_preprocess',
224
274
  'fastMONAI/vision_core.py'),
225
275
  'fastMONAI.vision_core._multi_channel': ( 'vision_core.html#_multi_channel',
226
276
  'fastMONAI/vision_core.py'),
227
277
  'fastMONAI.vision_core._preprocess': ('vision_core.html#_preprocess', 'fastMONAI/vision_core.py'),
228
278
  'fastMONAI.vision_core.med_img_reader': ( 'vision_core.html#med_img_reader',
229
- 'fastMONAI/vision_core.py'),
230
- 'fastMONAI.vision_core.setup_vscode_progress': ( 'vision_core.html#setup_vscode_progress',
231
- 'fastMONAI/vision_core.py')},
279
+ 'fastMONAI/vision_core.py')},
232
280
  'fastMONAI.vision_data': { 'fastMONAI.vision_data.MedDataBlock': ('vision_data.html#meddatablock', 'fastMONAI/vision_data.py'),
233
281
  'fastMONAI.vision_data.MedDataBlock.__init__': ( 'vision_data.html#meddatablock.__init__',
234
282
  'fastMONAI/vision_data.py'),
@@ -259,6 +307,8 @@ d = { 'settings': { 'branch': 'main',
259
307
  'fastMONAI/vision_inference.py'),
260
308
  'fastMONAI.vision_inference.inference': ( 'vision_inference.html#inference',
261
309
  'fastMONAI/vision_inference.py'),
310
+ 'fastMONAI.vision_inference.keep_largest': ( 'vision_inference.html#keep_largest',
311
+ 'fastMONAI/vision_inference.py'),
262
312
  'fastMONAI.vision_inference.load_system_resources': ( 'vision_inference.html#load_system_resources',
263
313
  'fastMONAI/vision_inference.py'),
264
314
  'fastMONAI.vision_inference.refine_binary_pred_mask': ( 'vision_inference.html#refine_binary_pred_mask',
@@ -281,21 +331,167 @@ d = { 'settings': { 'branch': 'main',
281
331
  'fastMONAI/vision_loss.py'),
282
332
  'fastMONAI.vision_loss.TverskyFocalLoss.forward': ( 'vision_loss_functions.html#tverskyfocalloss.forward',
283
333
  'fastMONAI/vision_loss.py')},
284
- 'fastMONAI.vision_metrics': { 'fastMONAI.vision_metrics.binary_dice_score': ( 'vision_metrics.html#binary_dice_score',
334
+ 'fastMONAI.vision_metrics': { 'fastMONAI.vision_metrics.AccumulatedDice': ( 'vision_metrics.html#accumulateddice',
335
+ 'fastMONAI/vision_metrics.py'),
336
+ 'fastMONAI.vision_metrics.AccumulatedDice.__init__': ( 'vision_metrics.html#accumulateddice.__init__',
337
+ 'fastMONAI/vision_metrics.py'),
338
+ 'fastMONAI.vision_metrics.AccumulatedDice.accumulate': ( 'vision_metrics.html#accumulateddice.accumulate',
339
+ 'fastMONAI/vision_metrics.py'),
340
+ 'fastMONAI.vision_metrics.AccumulatedDice.name': ( 'vision_metrics.html#accumulateddice.name',
341
+ 'fastMONAI/vision_metrics.py'),
342
+ 'fastMONAI.vision_metrics.AccumulatedDice.reset': ( 'vision_metrics.html#accumulateddice.reset',
343
+ 'fastMONAI/vision_metrics.py'),
344
+ 'fastMONAI.vision_metrics.AccumulatedDice.value': ( 'vision_metrics.html#accumulateddice.value',
345
+ 'fastMONAI/vision_metrics.py'),
346
+ 'fastMONAI.vision_metrics.AccumulatedMultiDice': ( 'vision_metrics.html#accumulatedmultidice',
347
+ 'fastMONAI/vision_metrics.py'),
348
+ 'fastMONAI.vision_metrics.AccumulatedMultiDice.name': ( 'vision_metrics.html#accumulatedmultidice.name',
349
+ 'fastMONAI/vision_metrics.py'),
350
+ 'fastMONAI.vision_metrics.AccumulatedMultiDice.value': ( 'vision_metrics.html#accumulatedmultidice.value',
351
+ 'fastMONAI/vision_metrics.py'),
352
+ 'fastMONAI.vision_metrics.binary_dice_score': ( 'vision_metrics.html#binary_dice_score',
285
353
  'fastMONAI/vision_metrics.py'),
286
354
  'fastMONAI.vision_metrics.binary_hausdorff_distance': ( 'vision_metrics.html#binary_hausdorff_distance',
287
355
  'fastMONAI/vision_metrics.py'),
356
+ 'fastMONAI.vision_metrics.binary_lesion_detection_rate': ( 'vision_metrics.html#binary_lesion_detection_rate',
357
+ 'fastMONAI/vision_metrics.py'),
358
+ 'fastMONAI.vision_metrics.binary_precision': ( 'vision_metrics.html#binary_precision',
359
+ 'fastMONAI/vision_metrics.py'),
360
+ 'fastMONAI.vision_metrics.binary_sensitivity': ( 'vision_metrics.html#binary_sensitivity',
361
+ 'fastMONAI/vision_metrics.py'),
362
+ 'fastMONAI.vision_metrics.binary_signed_rve': ( 'vision_metrics.html#binary_signed_rve',
363
+ 'fastMONAI/vision_metrics.py'),
364
+ 'fastMONAI.vision_metrics.calculate_confusion_metrics': ( 'vision_metrics.html#calculate_confusion_metrics',
365
+ 'fastMONAI/vision_metrics.py'),
288
366
  'fastMONAI.vision_metrics.calculate_dsc': ( 'vision_metrics.html#calculate_dsc',
289
367
  'fastMONAI/vision_metrics.py'),
290
368
  'fastMONAI.vision_metrics.calculate_haus': ( 'vision_metrics.html#calculate_haus',
291
369
  'fastMONAI/vision_metrics.py'),
370
+ 'fastMONAI.vision_metrics.calculate_lesion_detection_rate': ( 'vision_metrics.html#calculate_lesion_detection_rate',
371
+ 'fastMONAI/vision_metrics.py'),
372
+ 'fastMONAI.vision_metrics.calculate_signed_rve': ( 'vision_metrics.html#calculate_signed_rve',
373
+ 'fastMONAI/vision_metrics.py'),
292
374
  'fastMONAI.vision_metrics.multi_dice_score': ( 'vision_metrics.html#multi_dice_score',
293
375
  'fastMONAI/vision_metrics.py'),
294
376
  'fastMONAI.vision_metrics.multi_hausdorff_distance': ( 'vision_metrics.html#multi_hausdorff_distance',
295
- 'fastMONAI/vision_metrics.py')},
377
+ 'fastMONAI/vision_metrics.py'),
378
+ 'fastMONAI.vision_metrics.multi_lesion_detection_rate': ( 'vision_metrics.html#multi_lesion_detection_rate',
379
+ 'fastMONAI/vision_metrics.py'),
380
+ 'fastMONAI.vision_metrics.multi_precision': ( 'vision_metrics.html#multi_precision',
381
+ 'fastMONAI/vision_metrics.py'),
382
+ 'fastMONAI.vision_metrics.multi_sensitivity': ( 'vision_metrics.html#multi_sensitivity',
383
+ 'fastMONAI/vision_metrics.py'),
384
+ 'fastMONAI.vision_metrics.multi_signed_rve': ( 'vision_metrics.html#multi_signed_rve',
385
+ 'fastMONAI/vision_metrics.py')},
386
+ 'fastMONAI.vision_patch': { 'fastMONAI.vision_patch.MedPatchDataLoader': ( 'vision_patch.html#medpatchdataloader',
387
+ 'fastMONAI/vision_patch.py'),
388
+ 'fastMONAI.vision_patch.MedPatchDataLoader.__del__': ( 'vision_patch.html#medpatchdataloader.__del__',
389
+ 'fastMONAI/vision_patch.py'),
390
+ 'fastMONAI.vision_patch.MedPatchDataLoader.__enter__': ( 'vision_patch.html#medpatchdataloader.__enter__',
391
+ 'fastMONAI/vision_patch.py'),
392
+ 'fastMONAI.vision_patch.MedPatchDataLoader.__exit__': ( 'vision_patch.html#medpatchdataloader.__exit__',
393
+ 'fastMONAI/vision_patch.py'),
394
+ 'fastMONAI.vision_patch.MedPatchDataLoader.__init__': ( 'vision_patch.html#medpatchdataloader.__init__',
395
+ 'fastMONAI/vision_patch.py'),
396
+ 'fastMONAI.vision_patch.MedPatchDataLoader.__iter__': ( 'vision_patch.html#medpatchdataloader.__iter__',
397
+ 'fastMONAI/vision_patch.py'),
398
+ 'fastMONAI.vision_patch.MedPatchDataLoader.__len__': ( 'vision_patch.html#medpatchdataloader.__len__',
399
+ 'fastMONAI/vision_patch.py'),
400
+ 'fastMONAI.vision_patch.MedPatchDataLoader.close': ( 'vision_patch.html#medpatchdataloader.close',
401
+ 'fastMONAI/vision_patch.py'),
402
+ 'fastMONAI.vision_patch.MedPatchDataLoader.dataset': ( 'vision_patch.html#medpatchdataloader.dataset',
403
+ 'fastMONAI/vision_patch.py'),
404
+ 'fastMONAI.vision_patch.MedPatchDataLoader.device': ( 'vision_patch.html#medpatchdataloader.device',
405
+ 'fastMONAI/vision_patch.py'),
406
+ 'fastMONAI.vision_patch.MedPatchDataLoader.one_batch': ( 'vision_patch.html#medpatchdataloader.one_batch',
407
+ 'fastMONAI/vision_patch.py'),
408
+ 'fastMONAI.vision_patch.MedPatchDataLoader.to': ( 'vision_patch.html#medpatchdataloader.to',
409
+ 'fastMONAI/vision_patch.py'),
410
+ 'fastMONAI.vision_patch.MedPatchDataLoaders': ( 'vision_patch.html#medpatchdataloaders',
411
+ 'fastMONAI/vision_patch.py'),
412
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__del__': ( 'vision_patch.html#medpatchdataloaders.__del__',
413
+ 'fastMONAI/vision_patch.py'),
414
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__enter__': ( 'vision_patch.html#medpatchdataloaders.__enter__',
415
+ 'fastMONAI/vision_patch.py'),
416
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__exit__': ( 'vision_patch.html#medpatchdataloaders.__exit__',
417
+ 'fastMONAI/vision_patch.py'),
418
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__getitem__': ( 'vision_patch.html#medpatchdataloaders.__getitem__',
419
+ 'fastMONAI/vision_patch.py'),
420
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__init__': ( 'vision_patch.html#medpatchdataloaders.__init__',
421
+ 'fastMONAI/vision_patch.py'),
422
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__iter__': ( 'vision_patch.html#medpatchdataloaders.__iter__',
423
+ 'fastMONAI/vision_patch.py'),
424
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.__len__': ( 'vision_patch.html#medpatchdataloaders.__len__',
425
+ 'fastMONAI/vision_patch.py'),
426
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.apply_reorder': ( 'vision_patch.html#medpatchdataloaders.apply_reorder',
427
+ 'fastMONAI/vision_patch.py'),
428
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.bs': ( 'vision_patch.html#medpatchdataloaders.bs',
429
+ 'fastMONAI/vision_patch.py'),
430
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.close': ( 'vision_patch.html#medpatchdataloaders.close',
431
+ 'fastMONAI/vision_patch.py'),
432
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.cpu': ( 'vision_patch.html#medpatchdataloaders.cpu',
433
+ 'fastMONAI/vision_patch.py'),
434
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.cuda': ( 'vision_patch.html#medpatchdataloaders.cuda',
435
+ 'fastMONAI/vision_patch.py'),
436
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.device': ( 'vision_patch.html#medpatchdataloaders.device',
437
+ 'fastMONAI/vision_patch.py'),
438
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.from_df': ( 'vision_patch.html#medpatchdataloaders.from_df',
439
+ 'fastMONAI/vision_patch.py'),
440
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.new_empty': ( 'vision_patch.html#medpatchdataloaders.new_empty',
441
+ 'fastMONAI/vision_patch.py'),
442
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.one_batch': ( 'vision_patch.html#medpatchdataloaders.one_batch',
443
+ 'fastMONAI/vision_patch.py'),
444
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.patch_config': ( 'vision_patch.html#medpatchdataloaders.patch_config',
445
+ 'fastMONAI/vision_patch.py'),
446
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.target_spacing': ( 'vision_patch.html#medpatchdataloaders.target_spacing',
447
+ 'fastMONAI/vision_patch.py'),
448
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.to': ( 'vision_patch.html#medpatchdataloaders.to',
449
+ 'fastMONAI/vision_patch.py'),
450
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.train': ( 'vision_patch.html#medpatchdataloaders.train',
451
+ 'fastMONAI/vision_patch.py'),
452
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.train_ds': ( 'vision_patch.html#medpatchdataloaders.train_ds',
453
+ 'fastMONAI/vision_patch.py'),
454
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.valid': ( 'vision_patch.html#medpatchdataloaders.valid',
455
+ 'fastMONAI/vision_patch.py'),
456
+ 'fastMONAI.vision_patch.MedPatchDataLoaders.valid_ds': ( 'vision_patch.html#medpatchdataloaders.valid_ds',
457
+ 'fastMONAI/vision_patch.py'),
458
+ 'fastMONAI.vision_patch.PatchConfig': ( 'vision_patch.html#patchconfig',
459
+ 'fastMONAI/vision_patch.py'),
460
+ 'fastMONAI.vision_patch.PatchConfig.__post_init__': ( 'vision_patch.html#patchconfig.__post_init__',
461
+ 'fastMONAI/vision_patch.py'),
462
+ 'fastMONAI.vision_patch.PatchConfig.from_dataset': ( 'vision_patch.html#patchconfig.from_dataset',
463
+ 'fastMONAI/vision_patch.py'),
464
+ 'fastMONAI.vision_patch.PatchInferenceEngine': ( 'vision_patch.html#patchinferenceengine',
465
+ 'fastMONAI/vision_patch.py'),
466
+ 'fastMONAI.vision_patch.PatchInferenceEngine.__init__': ( 'vision_patch.html#patchinferenceengine.__init__',
467
+ 'fastMONAI/vision_patch.py'),
468
+ 'fastMONAI.vision_patch.PatchInferenceEngine.predict': ( 'vision_patch.html#patchinferenceengine.predict',
469
+ 'fastMONAI/vision_patch.py'),
470
+ 'fastMONAI.vision_patch.PatchInferenceEngine.to': ( 'vision_patch.html#patchinferenceengine.to',
471
+ 'fastMONAI/vision_patch.py'),
472
+ 'fastMONAI.vision_patch._extract_tio_transform': ( 'vision_patch.html#_extract_tio_transform',
473
+ 'fastMONAI/vision_patch.py'),
474
+ 'fastMONAI.vision_patch._get_default_device': ( 'vision_patch.html#_get_default_device',
475
+ 'fastMONAI/vision_patch.py'),
476
+ 'fastMONAI.vision_patch._normalize_patch_overlap': ( 'vision_patch.html#_normalize_patch_overlap',
477
+ 'fastMONAI/vision_patch.py'),
478
+ 'fastMONAI.vision_patch._warn_config_override': ( 'vision_patch.html#_warn_config_override',
479
+ 'fastMONAI/vision_patch.py'),
480
+ 'fastMONAI.vision_patch.create_patch_sampler': ( 'vision_patch.html#create_patch_sampler',
481
+ 'fastMONAI/vision_patch.py'),
482
+ 'fastMONAI.vision_patch.create_subjects_dataset': ( 'vision_patch.html#create_subjects_dataset',
483
+ 'fastMONAI/vision_patch.py'),
484
+ 'fastMONAI.vision_patch.med_to_subject': ( 'vision_patch.html#med_to_subject',
485
+ 'fastMONAI/vision_patch.py'),
486
+ 'fastMONAI.vision_patch.normalize_patch_transforms': ( 'vision_patch.html#normalize_patch_transforms',
487
+ 'fastMONAI/vision_patch.py'),
488
+ 'fastMONAI.vision_patch.patch_inference': ( 'vision_patch.html#patch_inference',
489
+ 'fastMONAI/vision_patch.py')},
296
490
  'fastMONAI.vision_plot': { 'fastMONAI.vision_plot._get_slice': ('vision_plot.html#_get_slice', 'fastMONAI/vision_plot.py'),
297
491
  'fastMONAI.vision_plot.find_max_slice': ( 'vision_plot.html#find_max_slice',
298
492
  'fastMONAI/vision_plot.py'),
299
493
  'fastMONAI.vision_plot.show_med_img': ('vision_plot.html#show_med_img', 'fastMONAI/vision_plot.py'),
494
+ 'fastMONAI.vision_plot.show_segmentation_comparison': ( 'vision_plot.html#show_segmentation_comparison',
495
+ 'fastMONAI/vision_plot.py'),
300
496
  'fastMONAI.vision_plot.validate_anatomical_plane': ( 'vision_plot.html#validate_anatomical_plane',
301
497
  'fastMONAI/vision_plot.py')}}}