fastMONAI 0.5.3__py3-none-any.whl → 0.5.4__py3-none-any.whl

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Files changed (20) hide show
  1. fastMONAI/__init__.py +1 -1
  2. fastMONAI/_modidx.py +171 -27
  3. fastMONAI/dataset_info.py +190 -45
  4. fastMONAI/external_data.py +1 -1
  5. fastMONAI/utils.py +101 -18
  6. fastMONAI/vision_all.py +3 -2
  7. fastMONAI/vision_augmentation.py +133 -29
  8. fastMONAI/vision_core.py +29 -132
  9. fastMONAI/vision_data.py +6 -6
  10. fastMONAI/vision_inference.py +35 -9
  11. fastMONAI/vision_metrics.py +420 -19
  12. fastMONAI/vision_patch.py +1125 -0
  13. fastMONAI/vision_plot.py +1 -0
  14. {fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/METADATA +5 -5
  15. fastmonai-0.5.4.dist-info/RECORD +21 -0
  16. {fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/WHEEL +1 -1
  17. fastmonai-0.5.3.dist-info/RECORD +0 -20
  18. {fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/entry_points.txt +0 -0
  19. {fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/licenses/LICENSE +0 -0
  20. {fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/top_level.txt +0 -0
fastMONAI/vision_plot.py CHANGED
@@ -4,6 +4,7 @@
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  __all__ = ['validate_anatomical_plane', 'show_med_img', 'find_max_slice']
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  # %% ../nbs/00_vision_plot.ipynb 1
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+ import warnings
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  from fastai.data.all import *
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  from torchio.visualization import rotate
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{fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: fastMONAI
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- Version: 0.5.3
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+ Version: 0.5.4
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  Summary: fastMONAI library
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  Home-page: https://github.com/MMIV-ML/fastMONAI
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  Author: Satheshkumar Kaliyugarasan
@@ -120,10 +120,10 @@ https://fastmonai.no for more information.
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  | Notebook | 1-Click Notebook |
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  |:---|----|
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- | [10a_tutorial_classification.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10a_tutorial_classification.ipynb) <br>shows how to construct a binary classification model based on MRI data. | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10a_tutorial_classification.ipynb) |
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- | [10b_tutorial_regression.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10b_tutorial_regression.ipynb) <br>shows how to construct a model to predict the age of a subject from MRI scans (“brain age”). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10b_tutorial_regression.ipynb) |
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- | [10c_tutorial_binary_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10c_tutorial_binary_segmentation.ipynb) <br>shows how to do binary segmentation (extract the left atrium from monomodal cardiac MRI). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10c_tutorial_binary_segmentation.ipynb) |
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- | [10d_tutorial_multiclass_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10d_tutorial_multiclass_segmentation.ipynb) <br>shows how to perform segmentation from multimodal MRI (brain tumor segmentation). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10d_tutorial_multiclass_segmentation.ipynb) |
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+ | [11b_tutorial_classification.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11b_tutorial_classification.ipynb) <br>shows how to construct a binary classification model based on MRI data. | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11b_tutorial_classification.ipynb) |
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+ | [11c_tutorial_regression.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11c_tutorial_regression.ipynb) <br>shows how to construct a model to predict the age of a subject from MRI scans (“brain age”). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11c_tutorial_regression.ipynb) |
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+ | [11d_tutorial_binary_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11d_tutorial_binary_segmentation.ipynb) <br>shows how to do binary segmentation (extract the left atrium from monomodal cardiac MRI). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11d_tutorial_binary_segmentation.ipynb) |
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+ | [11e_tutorial_multiclass_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11e_tutorial_multiclass_segmentation.ipynb) <br>shows how to perform segmentation from multimodal MRI (brain tumor segmentation). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11e_tutorial_multiclass_segmentation.ipynb) |
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  # How to contribute
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fastmonai-0.5.4.dist-info/RECORD ADDED
@@ -0,0 +1,21 @@
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+ fastMONAI/__init__.py,sha256=DITpct-LrdIsTgwx2NgH5Ghx5y8Xgz1YMimy1ZV5RTY,22
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+ fastMONAI/_modidx.py,sha256=eEccmLX_gTevLLfGe2ywec46xRkZrduEndx1lDMEync,59028
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+ fastMONAI/dataset_info.py,sha256=BzbTZAGTQ5idyXqf-tna84No5tu9Fjo2RJA6lTqhaW8,11043
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+ fastMONAI/external_data.py,sha256=Ofa6RmSKYj8LKlzWqPGfg9lu9lTjBmolJTo1zVgTe6g,12263
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+ fastMONAI/research_utils.py,sha256=LZu62g8BQAVYS4dD7qDsKHJXZnDd1uLkJ6LoaMDhUhk,590
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+ fastMONAI/utils.py,sha256=6bUgyVzUenkAUtf9gxJXeRsz2xc8uzjqsvzU2UVDKNI,19944
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+ fastMONAI/vision_all.py,sha256=L2JVYQq77X7Ko2SmzKUGAXwVjw898V_skGuQuYxjVd8,385
8
+ fastMONAI/vision_augmentation.py,sha256=EFEUkpU7xaGJGZd6iCqOfDe56zVrgAV8t_UC0iAAum0,15611
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+ fastMONAI/vision_core.py,sha256=xXGnutYD3sdWzpoMZHSfClUFmphsB7yFsDcY91Fa844,9539
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+ fastMONAI/vision_data.py,sha256=_SgwSlNm4ZOooFnrp5vYnA7ZAweV60a3XaOnozDKm6w,11569
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+ fastMONAI/vision_inference.py,sha256=fRPgIO-3XifBlCZY7qaucgymSLQQajcKvmZKWg0XfS4,7688
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+ fastMONAI/vision_loss.py,sha256=NrHnk1yD4EBKsp6aippppXU4l-mwmsZOqE_bsZP3ZNI,3591
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+ fastMONAI/vision_metrics.py,sha256=OED2ewWaZUtmkqc5CjmBWDboTVUlpsnsuFU-ZrIw4tI,18572
14
+ fastMONAI/vision_patch.py,sha256=C-LQEYt1bYCdmWG9PZJdCqlB1ucqNEA40qVF5gDA_Bs,44927
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+ fastMONAI/vision_plot.py,sha256=hdQQtS2fRdImKQABaUtK0vpmRw4hHEE8oZnsKAGy-0o,3808
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+ fastmonai-0.5.4.dist-info/licenses/LICENSE,sha256=xV8xoN4VOL0uw9X8RSs2IMuD_Ss_a9yAbtGNeBWZwnw,11337
17
+ fastmonai-0.5.4.dist-info/METADATA,sha256=ssu77BruDlG-RdrjO2ee7x43WzbPN1WSytpmLgkd4YE,7075
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+ fastmonai-0.5.4.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ fastmonai-0.5.4.dist-info/entry_points.txt,sha256=mVBsykSXMairzzk3hJaQ8c-UiwUZqGnn4aFZ24CpsBM,40
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+ fastmonai-0.5.4.dist-info/top_level.txt,sha256=o8y7SWF9odtnIT3jvYtUn9okbJRlaAMCy7oPFCeQvQ8,10
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+ fastmonai-0.5.4.dist-info/RECORD,,
{fastmonai-0.5.3.dist-info → fastmonai-0.5.4.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (80.9.0)
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+ Generator: setuptools (80.10.2)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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fastmonai-0.5.3.dist-info/RECORD DELETED
@@ -1,20 +0,0 @@
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- fastMONAI/__init__.py,sha256=tgzuqHKcEdKBaP57F5oXxq4XlW2n9J4Fj8ZGu7nGOZg,22
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- fastMONAI/_modidx.py,sha256=pV36J9-oryTjfV9gL-lXJqoCH9SCQFGsa_NIRdkUlYI,39527
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- fastMONAI/dataset_info.py,sha256=aJ-utYZ1OrA32RIQbF7jHxcDE8SgOZE3Vt1AojxnvZc,5026
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- fastMONAI/external_data.py,sha256=IVj9GbIRFh9bTFkIa2wySUObSnNfZiaVtuzFxOFAi0Q,12219
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- fastMONAI/research_utils.py,sha256=LZu62g8BQAVYS4dD7qDsKHJXZnDd1uLkJ6LoaMDhUhk,590
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- fastMONAI/utils.py,sha256=jG8SiYebcrPJsmnmMZh4SokWRj7McdJ_gftINnfcE1A,16590
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- fastMONAI/vision_all.py,sha256=_l6F8ZlUaPYcplNG6mg1-1xssYforByEe4zECbPzTck,359
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- fastMONAI/vision_augmentation.py,sha256=-4LsLuPi55bh0KduB6EPTzudG63japebszdtN5FtFC0,12281
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- fastMONAI/vision_core.py,sha256=k4RUBzZuh9W8J4zbcVzXCKfJxkKCsBDG0oSRMwiCNp0,13848
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- fastMONAI/vision_data.py,sha256=VCB3hyBN7dYuLiYGSGeuWlBTMvb2cLVo_sbENrRWe5Q,11510
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- fastMONAI/vision_inference.py,sha256=3SaJbKGbgaf9ON9PH5DtvfNlhAurov_Idnrlp4jyU9w,6625
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- fastMONAI/vision_loss.py,sha256=NrHnk1yD4EBKsp6aippppXU4l-mwmsZOqE_bsZP3ZNI,3591
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- fastMONAI/vision_metrics.py,sha256=CVxdOBPaMJT6Mo5jF3WoQj6a3C-_FsnBicMAU_ZrFS8,3549
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- fastMONAI/vision_plot.py,sha256=-X_nNBXx7lYCZSFBIN1587ZTA3T_-2ASBM4K31wU660,3792
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- fastmonai-0.5.3.dist-info/licenses/LICENSE,sha256=xV8xoN4VOL0uw9X8RSs2IMuD_Ss_a9yAbtGNeBWZwnw,11337
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- fastmonai-0.5.3.dist-info/METADATA,sha256=S_ocpvWghuz7Jau4C-2YKCtDaC7pI8qG3hvCtQvkybk,7075
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- fastmonai-0.5.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- fastmonai-0.5.3.dist-info/entry_points.txt,sha256=mVBsykSXMairzzk3hJaQ8c-UiwUZqGnn4aFZ24CpsBM,40
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- fastmonai-0.5.3.dist-info/top_level.txt,sha256=o8y7SWF9odtnIT3jvYtUn9okbJRlaAMCy7oPFCeQvQ8,10
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- fastmonai-0.5.3.dist-info/RECORD,,