fastMONAI 0.5.2__py3-none-any.whl → 0.5.4__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. fastMONAI/__init__.py +1 -1
  2. fastMONAI/_modidx.py +171 -27
  3. fastMONAI/dataset_info.py +190 -45
  4. fastMONAI/external_data.py +1 -1
  5. fastMONAI/utils.py +101 -18
  6. fastMONAI/vision_all.py +3 -2
  7. fastMONAI/vision_augmentation.py +133 -29
  8. fastMONAI/vision_core.py +29 -132
  9. fastMONAI/vision_data.py +6 -6
  10. fastMONAI/vision_inference.py +35 -9
  11. fastMONAI/vision_metrics.py +420 -19
  12. fastMONAI/vision_patch.py +1125 -0
  13. fastMONAI/vision_plot.py +1 -0
  14. {fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/METADATA +6 -6
  15. fastmonai-0.5.4.dist-info/RECORD +21 -0
  16. {fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/WHEEL +1 -1
  17. fastmonai-0.5.2.dist-info/RECORD +0 -20
  18. {fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/entry_points.txt +0 -0
  19. {fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/licenses/LICENSE +0 -0
  20. {fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/top_level.txt +0 -0
fastMONAI/vision_plot.py CHANGED
@@ -4,6 +4,7 @@
4
4
  __all__ = ['validate_anatomical_plane', 'show_med_img', 'find_max_slice']
5
5
 
6
6
  # %% ../nbs/00_vision_plot.ipynb 1
7
+ import warnings
7
8
  from fastai.data.all import *
8
9
  from torchio.visualization import rotate
9
10
 
{fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: fastMONAI
3
- Version: 0.5.2
3
+ Version: 0.5.4
4
4
  Summary: fastMONAI library
5
5
  Home-page: https://github.com/MMIV-ML/fastMONAI
6
6
  Author: Satheshkumar Kaliyugarasan
@@ -22,7 +22,7 @@ Requires-Dist: monai==1.5.0
22
22
  Requires-Dist: torchio==0.20.19
23
23
  Requires-Dist: xlrd>=1.2.0
24
24
  Requires-Dist: scikit-image==0.25.2
25
- Requires-Dist: imagedata==3.8.4
25
+ Requires-Dist: imagedata==3.8.14
26
26
  Requires-Dist: mlflow==3.3.1
27
27
  Requires-Dist: huggingface-hub
28
28
  Requires-Dist: gdown
@@ -120,10 +120,10 @@ https://fastmonai.no for more information.
120
120
 
121
121
  | Notebook | 1-Click Notebook |
122
122
  |:---|----|
123
- | [10a_tutorial_classification.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10a_tutorial_classification.ipynb) <br>shows how to construct a binary classification model based on MRI data. | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10a_tutorial_classification.ipynb) |
124
- | [10b_tutorial_regression.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10b_tutorial_regression.ipynb) <br>shows how to construct a model to predict the age of a subject from MRI scans (“brain age”). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10b_tutorial_regression.ipynb) |
125
- | [10c_tutorial_binary_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10c_tutorial_binary_segmentation.ipynb) <br>shows how to do binary segmentation (extract the left atrium from monomodal cardiac MRI). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10c_tutorial_binary_segmentation.ipynb) |
126
- | [10d_tutorial_multiclass_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/10d_tutorial_multiclass_segmentation.ipynb) <br>shows how to perform segmentation from multimodal MRI (brain tumor segmentation). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/10d_tutorial_multiclass_segmentation.ipynb) |
123
+ | [11b_tutorial_classification.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11b_tutorial_classification.ipynb) <br>shows how to construct a binary classification model based on MRI data. | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11b_tutorial_classification.ipynb) |
124
+ | [11c_tutorial_regression.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11c_tutorial_regression.ipynb) <br>shows how to construct a model to predict the age of a subject from MRI scans (“brain age”). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11c_tutorial_regression.ipynb) |
125
+ | [11d_tutorial_binary_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11d_tutorial_binary_segmentation.ipynb) <br>shows how to do binary segmentation (extract the left atrium from monomodal cardiac MRI). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11d_tutorial_binary_segmentation.ipynb) |
126
+ | [11e_tutorial_multiclass_segmentation.ipynb](https://nbviewer.org/github/MMIV-ML/fastMONAI/blob/main/nbs/11e_tutorial_multiclass_segmentation.ipynb) <br>shows how to perform segmentation from multimodal MRI (brain tumor segmentation). | [![Google Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MMIV-ML/fastMONAI/blob/main/nbs/11e_tutorial_multiclass_segmentation.ipynb) |
127
127
 
128
128
  # How to contribute
129
129
 
fastmonai-0.5.4.dist-info/RECORD ADDED
@@ -0,0 +1,21 @@
1
+ fastMONAI/__init__.py,sha256=DITpct-LrdIsTgwx2NgH5Ghx5y8Xgz1YMimy1ZV5RTY,22
2
+ fastMONAI/_modidx.py,sha256=eEccmLX_gTevLLfGe2ywec46xRkZrduEndx1lDMEync,59028
3
+ fastMONAI/dataset_info.py,sha256=BzbTZAGTQ5idyXqf-tna84No5tu9Fjo2RJA6lTqhaW8,11043
4
+ fastMONAI/external_data.py,sha256=Ofa6RmSKYj8LKlzWqPGfg9lu9lTjBmolJTo1zVgTe6g,12263
5
+ fastMONAI/research_utils.py,sha256=LZu62g8BQAVYS4dD7qDsKHJXZnDd1uLkJ6LoaMDhUhk,590
6
+ fastMONAI/utils.py,sha256=6bUgyVzUenkAUtf9gxJXeRsz2xc8uzjqsvzU2UVDKNI,19944
7
+ fastMONAI/vision_all.py,sha256=L2JVYQq77X7Ko2SmzKUGAXwVjw898V_skGuQuYxjVd8,385
8
+ fastMONAI/vision_augmentation.py,sha256=EFEUkpU7xaGJGZd6iCqOfDe56zVrgAV8t_UC0iAAum0,15611
9
+ fastMONAI/vision_core.py,sha256=xXGnutYD3sdWzpoMZHSfClUFmphsB7yFsDcY91Fa844,9539
10
+ fastMONAI/vision_data.py,sha256=_SgwSlNm4ZOooFnrp5vYnA7ZAweV60a3XaOnozDKm6w,11569
11
+ fastMONAI/vision_inference.py,sha256=fRPgIO-3XifBlCZY7qaucgymSLQQajcKvmZKWg0XfS4,7688
12
+ fastMONAI/vision_loss.py,sha256=NrHnk1yD4EBKsp6aippppXU4l-mwmsZOqE_bsZP3ZNI,3591
13
+ fastMONAI/vision_metrics.py,sha256=OED2ewWaZUtmkqc5CjmBWDboTVUlpsnsuFU-ZrIw4tI,18572
14
+ fastMONAI/vision_patch.py,sha256=C-LQEYt1bYCdmWG9PZJdCqlB1ucqNEA40qVF5gDA_Bs,44927
15
+ fastMONAI/vision_plot.py,sha256=hdQQtS2fRdImKQABaUtK0vpmRw4hHEE8oZnsKAGy-0o,3808
16
+ fastmonai-0.5.4.dist-info/licenses/LICENSE,sha256=xV8xoN4VOL0uw9X8RSs2IMuD_Ss_a9yAbtGNeBWZwnw,11337
17
+ fastmonai-0.5.4.dist-info/METADATA,sha256=ssu77BruDlG-RdrjO2ee7x43WzbPN1WSytpmLgkd4YE,7075
18
+ fastmonai-0.5.4.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
19
+ fastmonai-0.5.4.dist-info/entry_points.txt,sha256=mVBsykSXMairzzk3hJaQ8c-UiwUZqGnn4aFZ24CpsBM,40
20
+ fastmonai-0.5.4.dist-info/top_level.txt,sha256=o8y7SWF9odtnIT3jvYtUn9okbJRlaAMCy7oPFCeQvQ8,10
21
+ fastmonai-0.5.4.dist-info/RECORD,,
{fastmonai-0.5.2.dist-info → fastmonai-0.5.4.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (80.9.0)
2
+ Generator: setuptools (80.10.2)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
fastmonai-0.5.2.dist-info/RECORD DELETED
@@ -1,20 +0,0 @@
1
- fastMONAI/__init__.py,sha256=isJrmDBLRag7Zc2UK9ZovWGOv7ji1Oh-zJtJMNJFkXw,22
2
- fastMONAI/_modidx.py,sha256=pV36J9-oryTjfV9gL-lXJqoCH9SCQFGsa_NIRdkUlYI,39527
3
- fastMONAI/dataset_info.py,sha256=aJ-utYZ1OrA32RIQbF7jHxcDE8SgOZE3Vt1AojxnvZc,5026
4
- fastMONAI/external_data.py,sha256=IVj9GbIRFh9bTFkIa2wySUObSnNfZiaVtuzFxOFAi0Q,12219
5
- fastMONAI/research_utils.py,sha256=LZu62g8BQAVYS4dD7qDsKHJXZnDd1uLkJ6LoaMDhUhk,590
6
- fastMONAI/utils.py,sha256=jG8SiYebcrPJsmnmMZh4SokWRj7McdJ_gftINnfcE1A,16590
7
- fastMONAI/vision_all.py,sha256=_l6F8ZlUaPYcplNG6mg1-1xssYforByEe4zECbPzTck,359
8
- fastMONAI/vision_augmentation.py,sha256=-4LsLuPi55bh0KduB6EPTzudG63japebszdtN5FtFC0,12281
9
- fastMONAI/vision_core.py,sha256=k4RUBzZuh9W8J4zbcVzXCKfJxkKCsBDG0oSRMwiCNp0,13848
10
- fastMONAI/vision_data.py,sha256=VCB3hyBN7dYuLiYGSGeuWlBTMvb2cLVo_sbENrRWe5Q,11510
11
- fastMONAI/vision_inference.py,sha256=3SaJbKGbgaf9ON9PH5DtvfNlhAurov_Idnrlp4jyU9w,6625
12
- fastMONAI/vision_loss.py,sha256=NrHnk1yD4EBKsp6aippppXU4l-mwmsZOqE_bsZP3ZNI,3591
13
- fastMONAI/vision_metrics.py,sha256=CVxdOBPaMJT6Mo5jF3WoQj6a3C-_FsnBicMAU_ZrFS8,3549
14
- fastMONAI/vision_plot.py,sha256=-X_nNBXx7lYCZSFBIN1587ZTA3T_-2ASBM4K31wU660,3792
15
- fastmonai-0.5.2.dist-info/licenses/LICENSE,sha256=xV8xoN4VOL0uw9X8RSs2IMuD_Ss_a9yAbtGNeBWZwnw,11337
16
- fastmonai-0.5.2.dist-info/METADATA,sha256=ygTsuppVUZJZbXO9vaRhoaQnztQ7PwoaXU3KZcZbK3s,7074
17
- fastmonai-0.5.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
18
- fastmonai-0.5.2.dist-info/entry_points.txt,sha256=mVBsykSXMairzzk3hJaQ8c-UiwUZqGnn4aFZ24CpsBM,40
19
- fastmonai-0.5.2.dist-info/top_level.txt,sha256=o8y7SWF9odtnIT3jvYtUn9okbJRlaAMCy7oPFCeQvQ8,10
20
- fastmonai-0.5.2.dist-info/RECORD,,