fameio 1.8.2__py3-none-any.whl → 2.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (46) hide show
  1. CHANGELOG.md +204 -0
  2. fameio/scripts/__init__.py +8 -6
  3. fameio/scripts/__init__.py.license +3 -0
  4. fameio/scripts/convert_results.py +30 -34
  5. fameio/scripts/convert_results.py.license +3 -0
  6. fameio/scripts/make_config.py +13 -16
  7. fameio/scripts/make_config.py.license +3 -0
  8. fameio/source/cli/__init__.py +3 -0
  9. fameio/source/cli/convert_results.py +75 -0
  10. fameio/source/cli/make_config.py +62 -0
  11. fameio/source/cli/options.py +59 -0
  12. fameio/source/cli/parser.py +238 -0
  13. fameio/source/loader.py +10 -11
  14. fameio/source/logs.py +49 -25
  15. fameio/source/results/conversion.py +11 -13
  16. fameio/source/results/csv_writer.py +16 -5
  17. fameio/source/results/data_transformer.py +3 -2
  18. fameio/source/results/input_dao.py +163 -0
  19. fameio/source/results/reader.py +25 -14
  20. fameio/source/results/yaml_writer.py +28 -0
  21. fameio/source/scenario/agent.py +56 -39
  22. fameio/source/scenario/attribute.py +9 -12
  23. fameio/source/scenario/contract.py +55 -40
  24. fameio/source/scenario/exception.py +11 -9
  25. fameio/source/scenario/generalproperties.py +11 -17
  26. fameio/source/scenario/scenario.py +19 -14
  27. fameio/source/schema/agenttype.py +75 -27
  28. fameio/source/schema/attribute.py +8 -7
  29. fameio/source/schema/schema.py +24 -11
  30. fameio/source/series.py +146 -25
  31. fameio/source/time.py +8 -8
  32. fameio/source/tools.py +13 -2
  33. fameio/source/validator.py +138 -58
  34. fameio/source/writer.py +108 -112
  35. fameio-2.0.0.dist-info/LICENSES/Apache-2.0.txt +178 -0
  36. fameio-2.0.0.dist-info/LICENSES/CC-BY-4.0.txt +395 -0
  37. fameio-2.0.0.dist-info/LICENSES/CC0-1.0.txt +121 -0
  38. {fameio-1.8.2.dist-info → fameio-2.0.0.dist-info}/METADATA +694 -660
  39. fameio-2.0.0.dist-info/RECORD +52 -0
  40. {fameio-1.8.2.dist-info → fameio-2.0.0.dist-info}/WHEEL +1 -2
  41. fameio-2.0.0.dist-info/entry_points.txt +4 -0
  42. fameio/source/cli.py +0 -253
  43. fameio-1.8.2.dist-info/RECORD +0 -40
  44. fameio-1.8.2.dist-info/entry_points.txt +0 -3
  45. fameio-1.8.2.dist-info/top_level.txt +0 -1
  46. {fameio-1.8.2.dist-info → fameio-2.0.0.dist-info}/LICENSE.txt +0 -0
fameio/source/writer.py CHANGED
@@ -2,13 +2,16 @@
2
2
  #
3
3
  # SPDX-License-Identifier: Apache-2.0
4
4
 
5
- import logging as log
6
- import os.path
7
5
  from pathlib import Path
8
- from typing import Any, Dict
6
+ from typing import Any, Dict, List, Union
9
7
 
10
- import pandas as pd
11
- from fameio.source.logs import log_error_and_raise
8
+ from fameprotobuf.DataStorage_pb2 import DataStorage
9
+ from fameprotobuf.InputFile_pb2 import InputData
10
+ from fameprotobuf.Field_pb2 import NestedField
11
+ from fameprotobuf.Contract_pb2 import ProtoContract
12
+
13
+ from fameio.source.logs import log_error_and_raise, logger
14
+ from fameio.source.results.reader import Reader
12
15
  from fameio.source.scenario import (
13
16
  Agent,
14
17
  Attribute,
@@ -16,12 +19,11 @@ from fameio.source.scenario import (
16
19
  GeneralProperties,
17
20
  Scenario,
18
21
  )
19
- from fameio.source.path_resolver import PathResolver
22
+ from fameio.source.schema import Schema
20
23
  from fameio.source.schema.attribute import AttributeSpecs, AttributeType
21
24
  from fameio.source.series import TimeSeriesManager
22
- from fameio.source.time import START_IN_REAL_TIME, ConversionException, FameTime
25
+ from fameio.source.time import FameTime
23
26
  from fameio.source.tools import ensure_is_list
24
- from fameprotobuf import DataStorage_pb2
25
27
 
26
28
 
27
29
  class ProtoWriterException(Exception):
@@ -33,107 +35,106 @@ class ProtoWriterException(Exception):
33
35
  class ProtoWriter:
34
36
  """Writes a given scenario to protobuf file"""
35
37
 
38
+ _FAME_PROTOBUF_STREAM_HEADER = "famecoreprotobufstreamfilev001" # noqa
39
+
36
40
  _TYPE_NOT_IMPLEMENTED = "AttributeType '{}' not implemented."
37
- _NOT_TIME_SERIES = "Cannot convert value '{}' to TimeSeries."
38
41
  _CONTRACT_UNSUPPORTED = (
39
42
  "Unsupported value for Contract Attribute '{}'; "
40
43
  "Only support `int`, `float`, `enum` or `dict` types are supported here."
41
44
  )
42
45
  _USING_DEFAULT = "Using provided Default for Attribute: '{}'."
43
- _CORRUPT_TIME_SERIES_VALUE = "TimeSeries file '{}' is corrupt: At least one entry in value column is not numeric."
44
- _CORRUPT_TIME_SERIES_KEY = "TimeSeries file '{}' is corrupt: At least one entry in first column is not a timestamp."
45
- _TIME_SERIES_FILE_NOT_FOUND = "Cannot find TimeSeries file '{}'."
46
46
  _NO_FILE_SPECIFIED = "Could not write to '{}'. Please specify a valid output file."
47
47
 
48
- def __init__(self, file_path: Path, path_resolver=PathResolver()) -> None:
49
- self.file_path = file_path
50
- self.time_series_manager = TimeSeriesManager()
51
- self._path_resolver = path_resolver
48
+ _INFO_WRITING = "Writing scenario to protobuf file `{}`"
49
+ _INFO_WRITING_COMPLETED = "Saved protobuf file `{}` to disk"
50
+
51
+ def __init__(self, file_path: Path, time_series_manager: TimeSeriesManager) -> None:
52
+ self.file_path: Path = file_path
53
+ self._time_series_manager: TimeSeriesManager = time_series_manager
52
54
 
53
55
  def write_validated_scenario(self, scenario: Scenario) -> None:
54
56
  """Writes given validated Scenario to file"""
55
- log.info("Writing scenario to protobuf file `{}`".format(self.file_path))
56
- pb_data_storage = DataStorage_pb2.DataStorage()
57
- pb_input = pb_data_storage.input
58
-
59
- log.info("Adding General Properties")
60
- ProtoWriter._set_general_properties(pb_input, scenario.general_properties)
61
-
62
- log.info("Adding Agents")
63
- schema = scenario.schema
64
- for agent in scenario.agents:
65
- pb_agent = ProtoWriter._set_agent(pb_input.agent.add(), agent)
66
- attribute_specs = schema.agent_types[agent.type_name].attributes
67
- self._set_attributes(pb_agent, agent.attributes, attribute_specs)
57
+ pb_data_storage = self._create_protobuf_from_scenario(scenario)
58
+ self._write_protobuf_to_disk(pb_data_storage)
68
59
 
69
- log.info("Adding Contracts")
70
- for contract in scenario.contracts:
71
- pb_contract = ProtoWriter._set_contract(pb_input.contract.add(), contract)
72
- ProtoWriter._set_contract_attributes(pb_contract, contract.attributes)
60
+ def _create_protobuf_from_scenario(self, scenario: Scenario) -> DataStorage:
61
+ """Returns given `scenario` written to new DataStorage protobuf"""
62
+ logger().info("Converting scenario to protobuf.")
63
+ pb_data_storage = DataStorage()
64
+ pb_input = pb_data_storage.input
73
65
 
74
- log.info("Adding TimeSeries")
66
+ self._set_general_properties(pb_input, scenario.general_properties)
67
+ self._add_agents(pb_input, scenario.agents, scenario.schema)
68
+ self._add_contracts(pb_input, scenario.contracts)
75
69
  self._set_time_series(pb_input)
76
- log.info("Writing to disk")
77
- self._write_protobuf_to_disk(pb_data_storage)
70
+ self._set_schema(pb_input, scenario.schema)
71
+
72
+ return pb_data_storage
78
73
 
79
74
  @staticmethod
80
- def _set_general_properties(pb_input, gen_props: GeneralProperties) -> None:
81
- """Saves Scenario's general properties to specified protobuf `pb_input` container"""
82
- pb_input.runId = gen_props.run_id
83
- pb_input.simulation.startTime = gen_props.simulation_start_time
84
- pb_input.simulation.stopTime = gen_props.simulation_stop_time
85
- pb_input.simulation.randomSeed = gen_props.simulation_random_seed
86
- pb_input.output.interval = gen_props.output_interval
87
- pb_input.output.process = gen_props.output_process
75
+ def _set_general_properties(pb_input: InputData, general_properties: GeneralProperties) -> None:
76
+ """Saves a scenario's general properties to specified protobuf `pb_input` container"""
77
+ logger().info("Adding General Properties")
78
+ pb_input.runId = general_properties.run_id
79
+ pb_input.simulation.startTime = general_properties.simulation_start_time
80
+ pb_input.simulation.stopTime = general_properties.simulation_stop_time
81
+ pb_input.simulation.randomSeed = general_properties.simulation_random_seed
82
+ pb_input.output.interval = general_properties.output_interval
83
+ pb_input.output.process = general_properties.output_process
84
+
85
+ def _add_agents(self, pb_input: InputData, agents: List[Agent], schema: Schema) -> None:
86
+ """Triggers setting of `agents` to `pb_input`"""
87
+ logger().info("Adding Agents")
88
+ for agent in agents:
89
+ pb_agent = self._set_agent(pb_input.agent.add(), agent)
90
+ attribute_specs = schema.agent_types[agent.type_name].attributes
91
+ self._set_attributes(pb_agent, agent.attributes, attribute_specs)
92
+ pb_agent.metadata = repr(agent.meta_data)
88
93
 
89
94
  @staticmethod
90
- def _set_agent(pb_agent, agent: Agent):
91
- """Saves type and id of given `agent` to protobuf `pb_agent` container. Returns given `pb_agent`."""
95
+ def _set_agent(pb_agent: InputData.AgentDao, agent: Agent) -> InputData.AgentDao:
96
+ """Saves type and id of given `agent` to protobuf `pb_agent` container. Returns given `pb_agent`"""
92
97
  pb_agent.className = agent.type_name
93
98
  pb_agent.id = agent.id
94
99
  return pb_agent
95
100
 
96
101
  def _set_attributes(
97
102
  self,
98
- pb_parent,
103
+ pb_parent: Union[InputData.AgentDao, NestedField],
99
104
  attributes: Dict[str, Attribute],
100
105
  specs: Dict[str, AttributeSpecs],
101
106
  ) -> None:
102
107
  """Assigns `attributes` to protobuf fields of given `pb_parent` - cascades for nested Attributes"""
103
108
  values_not_set = [key for key in specs.keys()]
104
109
  for name, attribute in attributes.items():
105
- pb_field = ProtoWriter._add_field(pb_parent, name)
110
+ pb_field = self._add_field(pb_parent, name)
106
111
  attribute_specs = specs[name]
107
112
  values_not_set.remove(name)
108
113
  attribute_type = attribute_specs.attr_type
109
114
  if attribute_type is AttributeType.BLOCK:
110
115
  if attribute_specs.is_list:
111
116
  for index, entry in enumerate(attribute.nested_list):
112
- pb_inner = ProtoWriter._add_field(pb_field, str(index))
117
+ pb_inner = self._add_field(pb_field, str(index))
113
118
  self._set_attributes(pb_inner, entry, attribute_specs.nested_attributes)
114
119
  else:
115
- self._set_attributes(
116
- pb_field,
117
- attribute.nested,
118
- attribute_specs.nested_attributes,
119
- )
120
+ self._set_attributes(pb_field, attribute.nested, attribute_specs.nested_attributes)
120
121
  else:
121
122
  self._set_attribute(pb_field, attribute.value, attribute_type)
122
123
  for name in values_not_set:
123
124
  attribute_specs = specs[name]
124
125
  if attribute_specs.is_mandatory:
125
- pb_field = ProtoWriter._add_field(pb_parent, name)
126
+ pb_field = self._add_field(pb_parent, name)
126
127
  self._set_attribute(pb_field, attribute_specs.default_value, attribute_specs.attr_type)
127
- log.info(ProtoWriter._USING_DEFAULT.format(name))
128
+ logger().info(self._USING_DEFAULT.format(name))
128
129
 
129
130
  @staticmethod
130
- def _add_field(pb_parent, name: str) -> Any:
131
+ def _add_field(pb_parent: Union[InputData.AgentDao, NestedField], name: str) -> NestedField:
131
132
  """Returns new field with given `name` that is added to given `pb_parent`"""
132
133
  pb_field = pb_parent.field.add()
133
134
  pb_field.fieldName = name
134
135
  return pb_field
135
136
 
136
- def _set_attribute(self, pb_field, value, attribute_type: AttributeType) -> None:
137
+ def _set_attribute(self, pb_field: NestedField, value: Any, attribute_type: AttributeType) -> None:
137
138
  """Sets given `value` to given protobuf `pb_field` depending on specified `attribute_type`"""
138
139
  if attribute_type is AttributeType.INTEGER:
139
140
  pb_field.intValue.extend(ensure_is_list(value))
@@ -146,63 +147,21 @@ class ProtoWriter:
146
147
  elif attribute_type in (AttributeType.ENUM, AttributeType.STRING):
147
148
  pb_field.stringValue.extend(ensure_is_list(value))
148
149
  elif attribute_type is AttributeType.TIME_SERIES:
149
- self._set_time_series_from_value(pb_field, value)
150
+ pb_field.seriesId = self._time_series_manager.get_series_id_by_identifier(value)
150
151
  else:
151
- log_error_and_raise(ProtoWriterException(ProtoWriter._TYPE_NOT_IMPLEMENTED.format(attribute_type)))
152
-
153
- def _set_time_series_from_value(self, pb_field, value):
154
- """Hands given `value` to TimeSeriesManager to assign a unique id which is then set to `pb_field`.seriesId"""
155
- if not isinstance(value, (str, int, float)):
156
- log_error_and_raise(ProtoWriterException(ProtoWriter._NOT_TIME_SERIES.format(str(value))))
157
- elif isinstance(value, str):
158
- value = Path(value).as_posix()
159
- pb_field.seriesId = self.time_series_manager.save_get_time_series_id(value)
160
-
161
- def _set_time_series(self, pb_input):
162
- """Adds all time series from TimeSeriesManager to given `pb_input`"""
163
- ids_of_series_by_name = self.time_series_manager.get_ids_of_series_by_name()
164
- for identifier, unique_id in ids_of_series_by_name.items():
165
- pb_series = pb_input.timeSeries.add()
166
- pb_series.seriesId = unique_id
167
- series_name, data_frame = self._get_series_as_dataframe(identifier)
168
- pb_series.seriesName = series_name
169
- try:
170
- ProtoWriter._add_rows_to_series(pb_series, data_frame)
171
- except TypeError:
172
- log_error_and_raise(ProtoWriterException(ProtoWriter._CORRUPT_TIME_SERIES_VALUE.format(identifier)))
173
- except ConversionException:
174
- log_error_and_raise(ProtoWriterException(ProtoWriter._CORRUPT_TIME_SERIES_KEY.format(identifier)))
175
-
176
- def _get_series_as_dataframe(self, identifier) -> (str, pd.DataFrame):
177
- """Returns a DataFrame containing the series obtained from the given `identifier` and an associated name"""
178
- if isinstance(identifier, str):
179
- # expect the string to be a file path
180
- series_path = self._path_resolver.resolve_series_file_path(identifier)
181
- if series_path and os.path.exists(series_path):
182
- return identifier, pd.read_csv(series_path, sep=";", header=None)
183
- log_error_and_raise(ProtoWriterException(ProtoWriter._TIME_SERIES_FILE_NOT_FOUND.format(identifier)))
184
- else:
185
- name = "Constant value: {}".format(identifier)
186
- return name, pd.DataFrame({"time": [START_IN_REAL_TIME], "value": [identifier]})
152
+ log_error_and_raise(ProtoWriterException(self._TYPE_NOT_IMPLEMENTED.format(attribute_type)))
187
153
 
188
154
  @staticmethod
189
- def _add_rows_to_series(series, data_frame):
190
- for key, value in data_frame.itertuples(index=False):
191
- row = series.row.add()
192
- row.timeStep = FameTime.convert_string_if_is_datetime(key)
193
- row.value = value
194
-
195
- def _write_protobuf_to_disk(self, pb_data_storage) -> None:
196
- """Writes given `protobuf_input_data` to disk"""
197
- try:
198
- with open(self.file_path, "wb") as file:
199
- file.write(pb_data_storage.SerializeToString())
200
- except OSError as e:
201
- log_error_and_raise(ProtoWriterException(ProtoWriter._NO_FILE_SPECIFIED.format(self.file_path), e))
202
- log.info("Saved protobuf file `{}` to disk".format(self.file_path))
155
+ def _add_contracts(pb_input: InputData, contracts: List[Contract]) -> None:
156
+ """Triggers setting of `contracts` to `pb_input`"""
157
+ logger().info("Adding Contracts")
158
+ for contract in contracts:
159
+ pb_contract = ProtoWriter._set_contract(pb_input.contract.add(), contract)
160
+ ProtoWriter._set_contract_attributes(pb_contract, contract.attributes)
161
+ pb_contract.metadata = repr(contract.meta_data)
203
162
 
204
163
  @staticmethod
205
- def _set_contract(pb_contract, contract: Contract):
164
+ def _set_contract(pb_contract: ProtoContract, contract: Contract) -> ProtoContract:
206
165
  """Saves given `contract` details to protobuf container `pb_contract`. Returns given `pb_contract`"""
207
166
  pb_contract.senderId = contract.sender_id
208
167
  pb_contract.receiverId = contract.receiver_id
@@ -214,10 +173,12 @@ class ProtoWriter:
214
173
  return pb_contract
215
174
 
216
175
  @staticmethod
217
- def _set_contract_attributes(pb_parent, attributes: Dict[str, Attribute]) -> None:
176
+ def _set_contract_attributes(
177
+ pb_parent: Union[ProtoContract, NestedField], attributes: Dict[str, Attribute]
178
+ ) -> None:
218
179
  """Assign (nested) Attributes to given protobuf container `pb_parent`"""
219
180
  for name, attribute in attributes.items():
220
- log.debug("Assigning contract attribute `{}`.".format(name))
181
+ logger().debug("Assigning contract attribute `{}`.".format(name))
221
182
  pb_field = ProtoWriter._add_field(pb_parent, name)
222
183
 
223
184
  if attribute.has_value:
@@ -232,3 +193,38 @@ class ProtoWriter:
232
193
  log_error_and_raise(ProtoWriterException(ProtoWriter._CONTRACT_UNSUPPORTED.format(str(attribute))))
233
194
  elif attribute.has_nested:
234
195
  ProtoWriter._set_contract_attributes(pb_field, attribute.nested)
196
+
197
+ def _set_time_series(self, pb_input: InputData) -> None:
198
+ """Adds all time series from TimeSeriesManager to given `pb_input`"""
199
+ logger().info("Adding TimeSeries")
200
+ for unique_id, identifier, data in self._time_series_manager.get_all_series():
201
+ pb_series = pb_input.timeSeries.add()
202
+ pb_series.seriesId = unique_id
203
+ pb_series.seriesName = identifier
204
+ ProtoWriter._add_rows_to_series(pb_series, data)
205
+
206
+ @staticmethod
207
+ def _add_rows_to_series(series: InputData.TimeSeriesDao, data_frame) -> None:
208
+ for key, value in data_frame.itertuples(index=False):
209
+ row = series.row.add()
210
+ row.timeStep = int(key)
211
+ row.value = value
212
+
213
+ @staticmethod
214
+ def _set_schema(pb_input: InputData, schema: Schema) -> None:
215
+ """Sets the given `schema` `pb_input`"""
216
+ logger().info("Adding Schema")
217
+ pb_input.schema = schema.to_string()
218
+
219
+ def _write_protobuf_to_disk(self, pb_data_storage: DataStorage) -> None:
220
+ """Writes given `protobuf_input_data` to disk"""
221
+ logger().info(self._INFO_WRITING.format(self.file_path))
222
+ try:
223
+ with open(self.file_path, "wb") as file:
224
+ serialised_data_storage = pb_data_storage.SerializeToString()
225
+ file.write(self._FAME_PROTOBUF_STREAM_HEADER.encode(Reader.HEADER_ENCODING))
226
+ file.write(len(serialised_data_storage).to_bytes(Reader.BYTES_DEFINING_MESSAGE_LENGTH, byteorder="big"))
227
+ file.write(serialised_data_storage)
228
+ except OSError as e:
229
+ log_error_and_raise(ProtoWriterException(ProtoWriter._NO_FILE_SPECIFIED.format(self.file_path), e))
230
+ logger().info(self._INFO_WRITING_COMPLETED.format(self.file_path))
@@ -0,0 +1,178 @@
1
+ Copyright 2020 German Aerospace Center
2
+
3
+ Apache License
4
+ Version 2.0, January 2004
5
+ http://www.apache.org/licenses/
6
+
7
+ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
8
+
9
+ 1. Definitions.
10
+
11
+ "License" shall mean the terms and conditions for use, reproduction,
12
+ and distribution as defined by Sections 1 through 9 of this document.
13
+
14
+ "Licensor" shall mean the copyright owner or entity authorized by
15
+ the copyright owner that is granting the License.
16
+
17
+ "Legal Entity" shall mean the union of the acting entity and all
18
+ other entities that control, are controlled by, or are under common
19
+ control with that entity. For the purposes of this definition,
20
+ "control" means (i) the power, direct or indirect, to cause the
21
+ direction or management of such entity, whether by contract or
22
+ otherwise, or (ii) ownership of fifty percent (50%) or more of the
23
+ outstanding shares, or (iii) beneficial ownership of such entity.
24
+
25
+ "You" (or "Your") shall mean an individual or Legal Entity
26
+ exercising permissions granted by this License.
27
+
28
+ "Source" form shall mean the preferred form for making modifications,
29
+ including but not limited to software source code, documentation
30
+ source, and configuration files.
31
+
32
+ "Object" form shall mean any form resulting from mechanical
33
+ transformation or translation of a Source form, including but
34
+ not limited to compiled object code, generated documentation,
35
+ and conversions to other media types.
36
+
37
+ "Work" shall mean the work of authorship, whether in Source or
38
+ Object form, made available under the License, as indicated by a
39
+ copyright notice that is included in or attached to the work
40
+ (an example is provided in the Appendix below).
41
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