fabricatio 0.2.6.dev2__cp312-cp312-win_amd64.whl → 0.2.7.dev2__cp312-cp312-win_amd64.whl

fabricatio/models/extra.py

@@ -1,171 +1,811 @@
 """Extra models for built-in actions."""
 
-from typing import List
+from abc import abstractmethod
+from enum import Enum
+from itertools import chain
+from typing import Dict, Generator, List, Optional, Self, Tuple, Union, final, overload
 
-from fabricatio.models.generic import Base, Display, FinalizedDumpAble, PrepareVectorization, ProposedAble
-from pydantic import Field
+from fabricatio.journal import logger
+from fabricatio.models.generic import AsPrompt, Base, CensoredAble, Display, PrepareVectorization, ProposedAble, WithRef
+from fabricatio.models.utils import ok
+from pydantic import BaseModel, Field
 
+# <editor-fold desc="ArticleEssence">
 
-class Equation(Base):
-    """Structured representation of mathematical equations (including their physical or conceptual meanings)."""
+
+class Equation(BaseModel):
+    """Mathematical formalism specification for research contributions.
+
+    Encodes equations with dual representation: semantic meaning and typeset-ready notation.
+    """
 
     description: str
-    """A concise explanation of the equation's meaning, purpose, and relevance in the context of the research."""
+    """Equation significance structured in three elements:
+    1. Physical/conceptual meaning of the equation.
+    2. Role in technical workflow (e.g., derivation, optimization, or analysis).
+    3. Relationship to the paper's core contribution (e.g., theoretical foundation, empirical validation).
+    Example: "Defines constrained search space dimensionality reduction. Used in architecture optimization phase (Section 3.2). Enables 40% parameter reduction."
+    """
 
     latex_code: str
-    """The LaTeX code used to represent the equation in a publication-ready format."""
+    """LaTeX representation following academic typesetting standards:
+    - Must use equation environment (e.g., `equation`, `align`).
+    - Multiline equations must align at '=' using `&`.
+    - Include unit annotations where applicable.
+    Example: "\\begin{equation} \\mathcal{L}_{NAS} = \\alpha \\|\\theta\\|_2 + \\beta H(p) \\end{equation}"
+    """
+
 
+class Figure(BaseModel):
+    """Visual component specification for technical communication.
 
-class Figure(Base):
-    """Structured representation of figures (including their academic significance and explanatory captions)."""
+    Combines graphical assets with structured academic captioning.Extracted from the article provided
+    """
 
     description: str
-    """A detailed explanation of the figure's content and its role in conveying key insights."""
+    """Figure interpretation guide containing:
+    1. Key visual elements mapping (e.g., axes, legends, annotations).
+    2. Data representation methodology (e.g., visualization type, statistical measures).
+    3. Connection to research findings (e.g., supports hypothesis, demonstrates performance).
+    Example: "Architecture search space topology (left) vs. convergence curves (right). Demonstrates NAS efficiency gains through constrained search."
+    """
 
     figure_caption: str
-    """The caption accompanying the figure, summarizing its main points and academic value."""
+    """Complete caption following Nature-style guidelines:
+    1. Brief overview statement (首句总结).
+    2. Technical detail layer (e.g., data sources, experimental conditions).
+    3. Result implication (e.g., key insights, implications for future work).
+    Example: "Figure 3: Differentiable NAS framework. (a) Search space topology with constrained dimensions. (b) Training convergence across language pairs. Dashed lines indicate baseline methods."
+    """
+
+    figure_serial_number: int
+    """The Image serial number extracted from the Markdown article provided, the path usually in the form of `![](images/1.jpg)`, in this case the serial number is `1`"""
+
 
-    figure_path: str
-    """The file path to the figure"""
+class Algorithm(BaseModel):
+    """Algorithm specification for research contributions."""
 
+    title: str
+    """Algorithm title with technical focus descriptor (e.g., 'Gradient Descent Optimization').
 
-class Highlightings(Base):
-    """Structured representation of highlighted elements in an academic paper (including equations, algorithms, figures, and tables)."""
+    Tip: Do not attempt to translate the original element titles when generating JSON.
+    """
+
+    description: str
+    """Algorithm description with technical focus descriptor:
+    - Includes input/output specifications.
+    - Describes key steps and their purpose.
+    - Explains its role in the research workflow.
+    Example: "Proposed algorithm for neural architecture search. Inputs include search space constraints and training data. Outputs optimized architecture."
+    """
 
-    # Academic Achievements Showcase
-    highlighted_equations: List[Equation] = Field(default_factory=list)
-    """Core mathematical equations that represent breakthroughs in the field, accompanied by explanations of their physical or conceptual significance,Should always be in LaTeX format wrapped in $ or $$ signs."""
 
-    highlighted_algorithms: List[str] = Field(default_factory=list)
-    """Pseudocode for key algorithms, annotated to highlight innovative components."""
+class Table(BaseModel):
+    """Table specification for research contributions."""
 
-    highlighted_figures: List[Figure] = Field(default_factory=list)
-    """Critical diagrams or illustrations, each accompanied by a caption explaining their academic importance."""
+    title: str
+    """Table title with technical focus descriptor (e.g., 'Comparison of Model Performance Metrics').
 
-    highlighted_tables: List[str] = Field(default_factory=list)
-    """Important data tables, annotated to indicate statistical significance or other notable findings."""
+    Tip: Do not attempt to translate the original element titles when generating JSON.
+    """
+
+    description: str
+    """Table description with technical focus descriptor:
+    - Includes data source and structure.
+    - Explains key columns/rows and their significance.
+    - Connects to research findings or hypotheses.
+    Example: "Performance metrics for different architectures. Columns represent accuracy, F1-score, and inference time. Highlights efficiency gains of proposed method."
+    """
+
+
+class Highlightings(BaseModel):
+    """Technical showcase aggregator for research artifacts.
+
+    Curates core scientific components with machine-parseable annotations.
+    """
+
+    highlighted_equations: List[Equation]
+    """3-5 pivotal equations representing theoretical contributions:
+    - Each equation must be wrapped in $$ for display math.
+    - Contain at least one novel operator/symbol.
+    - Be referenced in Methods/Results sections.
+    Example: Equation describing proposed loss function.
+    """
+
+    highlighted_algorithms: List[Algorithm]
+    """1-2 key algorithms demonstrating methodological contributions:
+    - Include pseudocode or step-by-step descriptions.
+    - Highlight innovation in computational approach.
+    Example: Algorithm for constrained search space exploration.
+
+    Tip: Do not attempt to translate the original element titles when generating JSON.
+    """
+
+    highlighted_figures: List[Figure]
+    """4-6 key figures demonstrating:
+    1. Framework overview (1 required).
+    2. Quantitative results (2-3 required).
+    3. Ablation studies (1 optional).
+    Each must appear in Results/Discussion chapters.
+    Example: Figure showing architecture topology and convergence curves.
+    """
+
+    highlighted_tables: List[Table]
+    """2-3 key tables summarizing:
+    - Comparative analysis of methods.
+    - Empirical results supporting claims.
+    Example: Table comparing model performance across datasets.
+
+    Tip: Do not attempt to translate the original element titles when generating JSON.
+    """
 
 
 class ArticleEssence(ProposedAble, Display, PrepareVectorization):
-    """Structured representation of the core elements of an academic paper(providing a comprehensive digital profile of the paper's essential information)."""
+    """Semantic fingerprint of academic paper for structured analysis.
+
+    Encodes research artifacts with dual human-machine interpretability.
+    """
 
-    # Basic Metadata
     title: str = Field(...)
-    """The full title of the paper, including any subtitles if applicable."""
+    """Exact title of the original article without any modification.
+    Must be preserved precisely from the source material without:
+    - Translation
+    - Paraphrasing
+    - Adding/removing words
+    - Altering style or formatting
+    """
 
     authors: List[str]
-    """A list of the paper's authors, typically in the order of contribution."""
+    """Original author names exactly as they appear in the source document. No translation or paraphrasing.
+    Extract complete list without any modifications or formatting changes."""
 
     keywords: List[str]
-    """A list of keywords that summarize the paper's focus and facilitate indexing."""
+    """Original keywords exactly as they appear in the source document. No translation or paraphrasing.
+    Extract the complete set without modifying format or terminology."""
 
     publication_year: int
-    """The year in which the paper was published."""
+    """Publication timestamp in ISO 8601 (YYYY format)."""
 
-    # Core Content Elements
-    highlightings: Highlightings = Field(default_factory=Highlightings)
-    """A collection of highlighted elements in the paper, including equations, algorithms, figures, and tables."""
+    highlightings: Highlightings
+    """Technical highlight reel containing:
+    - Core equations (Theory)
+    - Key algorithms (Implementation)
+    - Critical figures (Results)
+    - Benchmark tables (Evaluation)"""
 
     domain: List[str]
-    """The research domains or fields addressed by the paper (e.g., ['Natural Language Processing', 'Computer Vision'])."""
+    """Domain tags for research focus."""
 
     abstract: str = Field(...)
-    """A structured abstract that outlines the research problem, methodology, and conclusions in three distinct sections."""
+    """Three-paragraph structured abstract:
+    Paragraph 1: Problem & Motivation (2-3 sentences)
+    Paragraph 2: Methodology & Innovations (3-4 sentences)
+    Paragraph 3: Results & Impact (2-3 sentences)
+    Total length: 150-250 words"""
 
     core_contributions: List[str]
-    """Key academic contributions that distinguish the paper from prior work in the field."""
+    """3-5 technical contributions using CRediT taxonomy verbs.
+    Each item starts with action verb.
+    Example:
+    - 'Developed constrained NAS framework'
+    - 'Established cross-lingual transfer metrics'"""
 
     technical_novelty: List[str]
-    """Specific technical innovations introduced by the research, listed as individual points."""
+    """Patent-style claims with technical specificity.
+    Format: 'A [system/method] comprising [novel components]...'
+    Example:
+    'A neural architecture search system comprising:
+     a differentiable constrained search space;
+     multi-lingual transferability predictors...'"""
 
-    # Academic Discussion Dimensions
     research_problems: List[str]
-    """A clearly defined research question or problem addressed by the study."""
+    """Problem statements as how/why questions.
+    Example:
+    - 'How to reduce NAS computational overhead while maintaining search diversity?'
+    - 'Why do existing architectures fail in low-resource cross-lingual transfer?'"""
 
     limitations: List[str]
-    """An analysis of the methodological or experimental limitations of the research."""
+    """Technical limitations analysis containing:
+    1. Constraint source (data/method/theory)
+    2. Impact quantification
+    3. Mitigation pathway
+    Example:
+    'Methodology constraint: Single-objective optimization (affects 5% edge cases),
+    mitigated through future multi-task extension'"""
 
     future_work: List[str]
-    """Suggestions for potential directions or topics for follow-up studies."""
+    """Research roadmap items with 3 horizons:
+    1. Immediate extensions (1 year)
+    2. Mid-term directions (2-3 years)
+    3. Long-term vision (5+ years)
+    Example:
+    'Short-term: Adapt framework for vision transformers (ongoing with CVPR submission)'"""
 
     impact_analysis: List[str]
-    """An assessment of the paper's potential influence on the development of the field."""
+    """Bibliometric impact projections:
+    - Expected citation counts (next 3 years)
+    - Target application domains
+    - Standard adoption potential
+    Example:
+    'Predicted 150+ citations via integration into MMEngine (Alibaba OpenMMLab)'"""
 
     def _prepare_vectorization_inner(self) -> str:
         return self.model_dump_json()
 
 
-class ArticleProposal(ProposedAble, Display):
-    """Structured representation of the proposal for an academic paper."""
+# </editor-fold>
+
+
+class ArticleProposal(CensoredAble, Display, WithRef[str], AsPrompt):
+    """Structured proposal for academic paper development with core research elements.
+
+    Guides LLM in generating comprehensive research proposals with clearly defined components.
+    """
 
     title: str = Field(...)
-    """The proposed title of the paper."""
+    """Paper title in academic style (Title Case, 8-15 words). Example: 'Exploring Neural Architecture Search for Low-Resource Machine Translation'"""
 
-    focused_problem: List[str] = Field(default_factory=list)
-    """The specific research problem or question that the paper aims to address."""
-    research_aim: List[str] = Field(default_factory=list)
-    """The main objective or goal of the research, outlining what the study aims to achieve."""
-    research_methods: List[str] = Field(default_factory=list)
-    """The methods used in the research, including the approach, techniques, and tools employed."""
+    focused_problem: List[str]
+    """Specific research problem(s) or question(s) addressed (list of 1-3 concise statements).
+    Example: ['NAS computational overhead in low-resource settings', 'Architecture transferability across language pairs']"""
 
+    research_aim: List[str]
+    """Primary research objectives (list of 2-4 measurable goals).
+    Example: ['Develop parameter-efficient NAS framework', 'Establish cross-lingual architecture transfer metrics']"""
 
-class ArticleSubsectionOutline(Base):
-    """Structured representation of the subsections of an academic paper."""
+    research_methods: List[str]
+    """Methodological components (list of techniques/tools).
+    Example: ['Differentiable architecture search', 'Transformer-based search space', 'Multi-lingual perplexity evaluation']"""
 
-    title: str = Field(...)
-    """The title of the subsection."""
+    technical_approaches: List[str]
+    """Technical approaches"""
 
-    description: str = Field(...)
-    """A brief description of the subsection's content should be, how it fits into the overall structure of the paper, and its significance in the context of the research."""
+    def _as_prompt_inner(self) -> Dict[str, str]:
+        return {"ArticleBriefing": self.referenced, "ArticleProposal": self.display()}
 
 
-class ArticleSectionOutline(Base):
-    """Structured representation of the sections of an academic paper."""
+class ReferringType(str, Enum):
+    """Enumeration of different types of references that can be made in an article."""
 
-    title: str = Field(...)
-    """The title of the section."""
-    description: str = Field(...)
-    """A brief description of the section's content should be, how it fits into the overall structure of the paper, and its significance in the context of the research."""
-    subsections: List[ArticleSubsectionOutline] = Field(default_factory=list)
-    """The subsections of the section, outlining their content and significance."""
+    CHAPTER: str = "chapter"
+    SECTION: str = "section"
+    SUBSECTION: str = "subsection"
 
 
-class ArticleChapterOutline(Base):
-    """Structured representation of the chapters of an academic paper."""
+class ArticleRef(CensoredAble):
+    """Reference to a specific chapter, section or subsection within the article. You SHALL not refer to an article component that is external and not present within our own article."""
+
+    referred_chapter_title: str
+    """`title` Field of the referenced chapter"""
+
+    referred_section_title: Optional[str] = None
+    """`title` Field of the referenced section. Defaults to None if not applicable, which means the reference is pointing to the entire chapter."""
+
+    referred_subsection_title: Optional[str] = None
+    """`title` Field of the referenced subsection. Defaults to None if not applicable, which means the reference is pointing to the entire section."""
+
+    def __hash__(self) -> int:
+        """Overrides the default hash function to ensure consistent hashing across instances."""
+        return hash((self.referred_chapter_title, self.referred_section_title, self.referred_subsection_title))
+
+    @overload
+    def deref(self, article: "Article") -> Optional["ArticleBase"]:
+        """Dereference the reference to the actual section or subsection within the provided article."""
+
+    @overload
+    def deref(self, article: "ArticleOutline") -> Optional["ArticleOutlineBase"]:
+        """Dereference the reference to the actual section or subsection within the provided article."""
+
+    def deref(self, article: Union["ArticleOutline", "Article"]) -> Union["ArticleOutlineBase", "ArticleBase", None]:
+        """Dereference the reference to the actual section or subsection within the provided article.
+
+        Args:
+            article (ArticleOutline | Article): The article to dereference the reference from.
+
+        Returns:
+            ArticleBase | ArticleOutline | None: The dereferenced section or subsection, or None if not found.
+        """
+        chap = next((chap for chap in article.chapters if chap.title == self.referred_chapter_title), None)
+        if self.referred_section_title is None or chap is None:
+            return chap
+        sec = next((sec for sec in chap.sections if sec.title == self.referred_section_title), None)
+        if self.referred_subsection_title is None or sec is None:
+            return sec
+        return next((subsec for subsec in sec.subsections if subsec.title == self.referred_subsection_title), None)
+
+    @property
+    def referring_type(self) -> ReferringType:
+        """Determine the type of reference based on the presence of specific attributes."""
+        if self.referred_subsection_title is not None:
+            return ReferringType.SUBSECTION
+        if self.referred_section_title is not None:
+            return ReferringType.SECTION
+        return ReferringType.CHAPTER
+
+
+# <editor-fold desc="ArticleOutline">
+class ArticleOutlineBase(Base):
+    """Base class for article outlines."""
+
+    writing_aim: List[str]
+    """Required: List of specific rhetorical objectives (3-5 items).
+    Format: Each item must be an actionable phrase starting with a verb.
+    Example: ['Establish metric validity', 'Compare with baseline approaches',
+             'Justify threshold selection']"""
+    depend_on: List[ArticleRef]
+    """Required: List of all essential ArticleRef objects identifying components this section builds upon.
+    Format: Each reference must point to a previously defined chapter, section, or subsection.
+    Note: Circular dependencies are not permitted."""
+    support_to: List[ArticleRef]
+    """Required: List of all essential ArticleRef objects identifying components this section provides evidence for.
+    Format: Each reference must point to a specific chapter, section, or subsection.
+    Note: References form a directed acyclic graph in the document structure."""
 
-    title: str = Field(...)
-    """The title of the chapter."""
     description: str = Field(...)
-    """A brief description of the chapter's content should be, how it fits into the overall structure of the paper, and its significance in the context of the research."""
-    sections: List[ArticleSectionOutline] = Field(default_factory=list)
-    """The sections of the chapter, outlining their content and significance."""
+    """Description of the research component in academic style."""
+    title: str = Field(...)
+    """Title of the research component in academic style."""
+
+
+class ArticleSubsectionOutline(ArticleOutlineBase):
+    """Atomic research component specification for academic paper generation."""
+
+
+class ArticleSectionOutline(ArticleOutlineBase):
+    """A slightly more detailed research component specification for academic paper generation."""
+
+    subsections: List[ArticleSubsectionOutline] = Field(min_length=1)
+    """List of subsections, each containing a specific research component. Must contains at least 1 subsection, But do remember you should always add more subsection as required."""
+
+
+class ArticleChapterOutline(ArticleOutlineBase):
+    """Macro-structural unit implementing standard academic paper organization."""
+
+    sections: List[ArticleSectionOutline] = Field(min_length=1)
+    """Standard academic progression implementing chapter goals:
+    1. Context Establishment
+    2. Technical Presentation
+    3. Empirical Validation
+    4. Comparative Analysis
+    5. Synthesis
 
+    Must contains at least 1 sections, But do remember you should always add more section as required.
+    """
 
-class ArticleOutline(ProposedAble, Display, FinalizedDumpAble):
-    """Structured representation of the outline for an academic paper."""
+
+class ArticleOutline(Display, CensoredAble, WithRef[ArticleProposal]):
+    """Complete academic paper blueprint with hierarchical validation."""
 
     title: str = Field(...)
-    """The proposed title of the paper."""
+    """Title of the academic paper."""
 
     prospect: str = Field(...)
-    """A brief description of the research problem or question that the paper aims to address manipulating methods or techniques"""
+    """Consolidated research statement with four pillars:
+    1. Problem Identification: Current limitations
+    2. Methodological Response: Technical approach
+    3. Empirical Validation: Evaluation strategy
+    4. Scholarly Impact: Field contributions
+
+    Example: 'Addressing NAS computational barriers through constrained
+    differentiable search spaces, validated via cross-lingual MT experiments
+    across 50+ languages, enabling efficient architecture discovery with
+    60% reduced search costs.'"""
 
-    chapters: List[ArticleChapterOutline] = Field(default_factory=list)
-    """The chapters of the paper, outlining their content and significance."""
+    chapters: List[ArticleChapterOutline]
+    """List of ArticleChapterOutline objects representing the academic paper's structure."""
+
+    abstract: str = Field(...)
+    """The abstract is a concise summary of the academic paper's main findings."""
 
     def finalized_dump(self) -> str:
-        """Finalized dump of the article outline.
+        """Generates standardized hierarchical markup for academic publishing systems.
+
+        Implements ACL 2024 outline conventions with four-level structure:
+        = Chapter Title (Level 1)
+        == Section Title (Level 2)
+        === Subsection Title (Level 3)
+        ==== Subsubsection Title (Level 4)
 
         Returns:
-            str: The finalized dump of the article outline.
+            str: Strictly formatted outline with academic sectioning
+
+        Example:
+            = Methodology
+            == Neural Architecture Search Framework
+            === Differentiable Search Space
+            ==== Constrained Optimization Parameters
+            === Implementation Details
+            == Evaluation Protocol
         """
         lines: List[str] = []
+        for i, chapter in enumerate(self.chapters, 1):
+            lines.append(f"= Chapter {i}: {chapter.title}")
+            for j, section in enumerate(chapter.sections, 1):
+                lines.append(f"== {i}.{j} {section.title}")
+                for k, subsection in enumerate(section.subsections, 1):
+                    lines.append(f"=== {i}.{j}.{k} {subsection.title}")
+        return "\n".join(lines)
 
+    def iter_dfs(self) -> Generator[ArticleOutlineBase, None, None]:
+        """Iterates through the article outline in a depth-first manner.
+
+        Returns:
+            ArticleOutlineBase: Each component in the article outline.
+        """
         for chapter in self.chapters:
-            lines.append(f"= {chapter.title}")
             for section in chapter.sections:
-                lines.append(f"== {section.title}")
+                yield from section.subsections
+                yield section
+            yield chapter
+
+    def resolve_ref_error(self) -> str:
+        """Resolve reference errors in the article outline.
+
+        Returns:
+            str: Error message indicating reference errors in the article outline.
+
+        Notes:
+            This function is designed to find all invalid `ArticleRef` objs in `depend_on` and `support_to` fields, which will be added to the final error summary.
+        """
+        summary = ""
+        for component in self.iter_dfs():
+            for ref in component.depend_on:
+                if not ref.deref(self):
+                    summary += f"Invalid internal reference in {component.__class__.__name__} titled `{component.title}` at `depend_on` field, because the referred {ref.referring_type} is not exists within the article, see the original obj dump: {ref.model_dump()}\n"
+            for ref in component.support_to:
+                if not ref.deref(self):
+                    summary += f"Invalid internal reference in {component.__class__.__name__} titled `{component.title}` at `support_to` field, because the referred {ref.referring_type} is not exists within the article, see the original obj dump: {ref.model_dump()}\n"
+
+        return summary
+
+
+# </editor-fold>
+
+
+# <editor-fold desc="Article">
+class Paragraph(CensoredAble):
+    """Structured academic paragraph blueprint for controlled content generation."""
+
+    description: str
+    """Functional summary of the paragraph's role in document structure.
+    Example: 'Establishes NAS efficiency improvements through differentiable methods'"""
+
+    writing_aim: List[str]
+    """Specific communicative objectives for this paragraph's content.
+    Example: ['Introduce gradient-based NAS', 'Compare computational costs',
+             'Link efficiency to practical applications']"""
+
+    sentences: List[str]
+    """List of sentences forming the paragraph's content."""
+
+
+class ArticleBase(CensoredAble, Display, ArticleOutlineBase):
+    """Foundation for hierarchical document components with dependency tracking."""
+
+    @abstractmethod
+    def to_typst_code(self) -> str:
+        """Converts the component into a Typst code snippet for rendering."""
+
+    def _update_pre_check(self, other: Self) -> Self:
+        if not isinstance(other, self.__class__):
+            raise TypeError(f"Cannot update from a non-{self.__class__} instance.")
+        if self.title != other.title:
+            raise ValueError("Cannot update from a different title.")
+        return self
+
+    @abstractmethod
+    def resolve_update_error(self, other: Self) -> str:
+        """Resolve update errors in the article outline.
+
+        Returns:
+            str: Error message indicating update errors in the article outline.
+        """
+
+    @abstractmethod
+    def _update_from_inner(self, other: Self) -> Self:
+        """Updates the current instance with the attributes of another instance."""
+
+    @final
+    def update_from(self, other: Self) -> Self:
+        """Updates the current instance with the attributes of another instance."""
+        return self._update_pre_check(other)._update_from_inner(other)
+
+    def __eq__(self, other: "ArticleBase") -> bool:
+        """Compares two ArticleBase objects based on their model_dump_json representation."""
+        return self.model_dump_json() == other.model_dump_json()
+
+    def __hash__(self) -> int:
+        """Calculates a hash value for the ArticleBase object based on its model_dump_json representation."""
+        return hash(self.model_dump_json())
+
+
+class ArticleSubsection(ArticleBase):
+    """Atomic argumentative unit with technical specificity."""
+
+    paragraphs: List[Paragraph]
+    """List of Paragraph objects containing the content of the subsection."""
+
+    def resolve_update_error(self, other: Self) -> str:
+        """Resolve update errors in the article outline."""
+        if self.title != other.title:
+            return f"Title `{other.title}` mismatched, expected `{self.title}`. "
+        return ""
+
+    def _update_from_inner(self, other: Self) -> Self:
+        """Updates the current instance with the attributes of another instance."""
+        logger.debug(f"Updating SubSection {self.title}")
+        self.paragraphs = other.paragraphs
+        return self
+
+    def to_typst_code(self) -> str:
+        """Converts the component into a Typst code snippet for rendering.
+
+        Returns:
+            str: Typst code snippet for rendering.
+        """
+        return f"=== {self.title}\n" + "\n\n".join("".join(p.sentences) for p in self.paragraphs)
+
+
+class ArticleSection(ArticleBase):
+    """Atomic argumentative unit with high-level specificity."""
+
+    subsections: List[ArticleSubsection]
+    """List of ArticleSubsection objects containing the content of the section."""
+
+    def resolve_update_error(self, other: Self) -> str:
+        """Resolve update errors in the article outline."""
+        if (s_len := len(self.subsections)) == 0:
+            return ""
+
+        if s_len != len(other.subsections):
+            return f"Subsections length mismatched, expected {len(self.subsections)}, got {len(other.subsections)}"
+
+        sub_sec_err_seq = [
+            out for s, o in zip(self.subsections, other.subsections, strict=True) if (out := s.resolve_update_error(o))
+        ]
+
+        if sub_sec_err_seq:
+            return "\n".join(sub_sec_err_seq)
+        return ""
+
+    def _update_from_inner(self, other: Self) -> Self:
+        """Updates the current instance with the attributes of another instance."""
+        if len(self.subsections) == 0:
+            self.subsections = other.subsections
+            return self
+
+        for self_subsec, other_subsec in zip(self.subsections, other.subsections, strict=True):
+            self_subsec.update_from(other_subsec)
+        return self
+
+    def to_typst_code(self) -> str:
+        """Converts the section into a Typst formatted code snippet.
+
+        Returns:
+            str: The formatted Typst code snippet.
+        """
+        return f"== {self.title}\n" + "\n\n".join(subsec.to_typst_code() for subsec in self.subsections)
+
+
+class ArticleChapter(ArticleBase):
+    """Thematic progression implementing research function."""
+
+    sections: List[ArticleSection]
+    """Thematic progression implementing chapter's research function."""
+
+    def resolve_update_error(self, other: Self) -> str:
+        """Resolve update errors in the article outline."""
+        if (s_len := len(self.sections)) == 0:
+            return ""
+
+        if s_len != len(other.sections):
+            return f"Sections length mismatched, expected {len(self.sections)}, got {len(other.sections)}"
+        sec_err_seq = [
+            out for s, o in zip(self.sections, other.sections, strict=True) if (out := s.resolve_update_error(o))
+        ]
+        if sec_err_seq:
+            return "\n".join(sec_err_seq)
+        return ""
+
+    def _update_from_inner(self, other: Self) -> Self:
+        """Updates the current instance with the attributes of another instance."""
+        if len(self.sections) == 0:
+            self.sections = other.sections
+            return self
+
+        for self_sec, other_sec in zip(self.sections, other.sections, strict=True):
+            self_sec.update_from(other_sec)
+        return self
+
+    def to_typst_code(self) -> str:
+        """Converts the chapter into a Typst formatted code snippet for rendering."""
+        return f"= {self.title}\n" + "\n\n".join(sec.to_typst_code() for sec in self.sections)
+
+
+class Article(Display, CensoredAble, WithRef[ArticleOutline]):
+    """Complete academic paper specification with validation constraints."""
+
+    title: str = Field(...)
+    """The academic title"""
+
+    abstract: str = Field(...)
+    """Abstract of the academic paper."""
+
+    chapters: List[ArticleChapter]
+    """List of ArticleChapter objects representing the academic paper's structure."""
+
+    def finalized_dump(self) -> str:
+        """Exports the article in `typst` format.
+
+        Returns:
+                str: Strictly formatted outline with typst formatting.
+        """
+        return "\n\n".join(c.to_typst_code() for c in self.chapters)
+
+    @classmethod
+    def from_outline(cls, outline: ArticleOutline) -> "Article":
+        """Generates an article from the given outline.
+
+        Args:
+            outline (ArticleOutline): The outline to generate the article from.
+
+        Returns:
+            Article: The generated article.
+        """
+        # Set the title from the outline
+        article = Article(**outline.model_dump(include={"title", "abstract"}), chapters=[])
+
+        for chapter in outline.chapters:
+            # Create a new chapter
+            article_chapter = ArticleChapter(
+                sections=[],
+                **chapter.model_dump(exclude={"sections"}),
+            )
+            for section in chapter.sections:
+                # Create a new section
+                article_section = ArticleSection(
+                    subsections=[],
+                    **section.model_dump(exclude={"subsections"}),
+                )
                 for subsection in section.subsections:
-                    lines.append(f"=== {subsection.title}")
+                    # Create a new subsection
+                    article_subsection = ArticleSubsection(
+                        paragraphs=[],
+                        **subsection.model_dump(),
+                    )
+                    article_section.subsections.append(article_subsection)
+                article_chapter.sections.append(article_section)
+            article.chapters.append(article_chapter)
+        return article
+
+    def chap_iter(self) -> Generator[ArticleChapter, None, None]:
+        """Iterates over all chapters in the article.
+
+        Yields:
+            ArticleChapter: Each chapter in the article.
+        """
+        yield from self.chapters
+
+    def section_iter(self) -> Generator[ArticleSection, None, None]:
+        """Iterates over all sections in the article.
+
+        Yields:
+            ArticleSection: Each section in the article.
+        """
+        for chap in self.chapters:
+            yield from chap.sections
+
+    def subsection_iter(self) -> Generator[ArticleSubsection, None, None]:
+        """Iterates over all subsections in the article.
+
+        Yields:
+            ArticleSubsection: Each subsection in the article.
+        """
+        for sec in self.section_iter():
+            yield from sec.subsections
+
+    def iter_dfs(self) -> Generator[ArticleBase, None, None]:
+        """Performs a depth-first search (DFS) through the article structure.
+
+        Returns:
+            Generator[ArticleBase]: Each component in the article structure.
+        """
+        for chap in self.chap_iter():
+            for sec in chap.sections:
+                yield from sec.subsections
+                yield sec
+            yield chap
+
+    def deref(self, ref: ArticleRef) -> ArticleBase:
+        """Resolves a reference to the corresponding section or subsection in the article.
+
+        Args:
+            ref (ArticleRef): The reference to resolve.
+
+        Returns:
+            ArticleBase: The corresponding section or subsection.
+        """
+        return ok(ref.deref(self), f"{ref} not found in {self.title}")
+
+    def gather_dependencies(self, article: ArticleBase) -> List[ArticleBase]:
+        """Gathers dependencies for all sections and subsections in the article.
+
+        This method should be called after the article is fully constructed.
+        """
+        depends = [self.deref(a) for a in article.depend_on]
+
+        supports = []
+        for a in self.iter_dfs():
+            if article in {self.deref(b) for b in a.support_to}:
+                supports.append(a)
+
+        return list(set(depends + supports))
+
+    def gather_dependencies_recursive(self, article: ArticleBase) -> List[ArticleBase]:
+        """Gathers all dependencies recursively for the given article.
+
+        Args:
+            article (ArticleBase): The article to gather dependencies for.
+
+        Returns:
+            List[ArticleBase]: A list of all dependencies for the given article.
+        """
+        q = self.gather_dependencies(article)
+
+        deps = []
+        while q:
+            a = q.pop()
+            deps.extend(self.gather_dependencies(a))
+
+        deps = list(
+            chain(
+                filter(lambda x: isinstance(x, ArticleChapter), deps),
+                filter(lambda x: isinstance(x, ArticleSection), deps),
+                filter(lambda x: isinstance(x, ArticleSubsection), deps),
+            )
+        )
+
+        # Initialize result containers
+        formatted_code = ""
+        processed_components = []
+
+        # Process all dependencies
+        while deps:
+            component = deps.pop()
+            # Skip duplicates
+            if (component_code := component.to_typst_code()) in formatted_code:
+                continue
+
+            # Add this component
+            formatted_code += component_code
+            processed_components.append(component)
+
+        return processed_components
+
+    def iter_dfs_with_deps(
+        self, chapter: bool = True, section: bool = True, subsection: bool = True
+    ) -> Generator[Tuple[ArticleBase, List[ArticleBase]], None, None]:
+        """Iterates through the article in a depth-first manner, yielding each component and its dependencies.
+
+        Args:
+            chapter (bool, optional): Whether to include chapter components. Defaults to True.
+            section (bool, optional): Whether to include section components. Defaults to True.
+            subsection (bool, optional): Whether to include subsection components. Defaults to True.
+
+        Yields:
+            Tuple[ArticleBase, List[ArticleBase]]: Each component and its dependencies.
+        """
+        if all((not chapter, not section, not subsection)):
+            raise ValueError("At least one of chapter, section, or subsection must be True.")
+
+        for component in self.iter_dfs():
+            if not chapter and isinstance(component, ArticleChapter):
+                continue
+            if not section and isinstance(component, ArticleSection):
+                continue
+            if not subsection and isinstance(component, ArticleSubsection):
+                continue
+            yield component, (self.gather_dependencies_recursive(component))
+
 
-        return "\n\n".join(lines)
+# </editor-fold>