explainiverse 0.4.0__py3-none-any.whl → 0.5.0__py3-none-any.whl

explainiverse/__init__.py

@@ -33,7 +33,7 @@ from explainiverse.adapters.sklearn_adapter import SklearnAdapter
 from explainiverse.adapters import TORCH_AVAILABLE
 from explainiverse.engine.suite import ExplanationSuite
 
-__version__ = "0.4.0"
+__version__ = "0.5.0"
 
 __all__ = [
     # Core

explainiverse/core/registry.py

@@ -372,6 +372,7 @@ def _create_default_registry() -> ExplainerRegistry:
     from explainiverse.explainers.gradient.integrated_gradients import IntegratedGradientsExplainer
     from explainiverse.explainers.gradient.gradcam import GradCAMExplainer
     from explainiverse.explainers.gradient.deeplift import DeepLIFTExplainer, DeepLIFTShapExplainer
+    from explainiverse.explainers.gradient.smoothgrad import SmoothGradExplainer
     from explainiverse.explainers.example_based.protodash import ProtoDashExplainer
     
     registry = ExplainerRegistry()
@@ -533,6 +534,23 @@ def _create_default_registry() -> ExplainerRegistry:
         )
     )
     
+    # Register SmoothGrad (for neural networks)
+    registry.register(
+        name="smoothgrad",
+        explainer_class=SmoothGradExplainer,
+        meta=ExplainerMeta(
+            scope="local",
+            model_types=["neural"],
+            data_types=["tabular", "image"],
+            task_types=["classification", "regression"],
+            description="SmoothGrad - noise-averaged gradients for smoother saliency maps (requires PyTorch)",
+            paper_reference="Smilkov et al., 2017 - 'SmoothGrad: removing noise by adding noise' (ICML Workshop)",
+            complexity="O(n_samples * forward_pass)",
+            requires_training_data=False,
+            supports_batching=True
+        )
+    )
+    
     # =========================================================================
     # Global Explainers (model-level)
     # =========================================================================

explainiverse/explainers/gradient/__init__.py

@@ -9,10 +9,12 @@ typically via the PyTorchAdapter.
 from explainiverse.explainers.gradient.integrated_gradients import IntegratedGradientsExplainer
 from explainiverse.explainers.gradient.gradcam import GradCAMExplainer
 from explainiverse.explainers.gradient.deeplift import DeepLIFTExplainer, DeepLIFTShapExplainer
+from explainiverse.explainers.gradient.smoothgrad import SmoothGradExplainer
 
 __all__ = [
     "IntegratedGradientsExplainer", 
     "GradCAMExplainer",
     "DeepLIFTExplainer",
     "DeepLIFTShapExplainer",
+    "SmoothGradExplainer",
 ]

explainiverse/explainers/gradient/smoothgrad.py

@@ -0,0 +1,424 @@
+# src/explainiverse/explainers/gradient/smoothgrad.py
+"""
+SmoothGrad - Removing Noise by Adding Noise.
+
+SmoothGrad reduces noise in gradient-based saliency maps by averaging
+gradients computed on noisy copies of the input. This produces smoother,
+more visually coherent attributions that are often easier to interpret.
+
+Key Properties:
+- Simple: Just averages gradients over noisy inputs
+- Effective: Significantly reduces noise in saliency maps
+- Flexible: Works with any gradient-based method
+- Fast: Only requires multiple forward/backward passes (parallelizable)
+
+Variants:
+- SmoothGrad: Average of gradients
+- SmoothGrad-Squared: Average of squared gradients (sharper)
+- VarGrad: Variance of gradients (uncertainty quantification)
+
+Reference:
+    Smilkov, D., Thorat, N., Kim, B., Viégas, F., & Wattenberg, M. (2017).
+    SmoothGrad: removing noise by adding noise.
+    ICML Workshop on Visualization for Deep Learning.
+    https://arxiv.org/abs/1706.03825
+
+Example:
+    from explainiverse.explainers.gradient import SmoothGradExplainer
+    from explainiverse.adapters import PyTorchAdapter
+    
+    adapter = PyTorchAdapter(model, task="classification")
+    
+    explainer = SmoothGradExplainer(
+        model=adapter,
+        feature_names=feature_names,
+        n_samples=50,
+        noise_scale=0.15
+    )
+    
+    explanation = explainer.explain(instance)
+"""
+
+import numpy as np
+from typing import List, Optional
+
+from explainiverse.core.explainer import BaseExplainer
+from explainiverse.core.explanation import Explanation
+
+
+class SmoothGradExplainer(BaseExplainer):
+    """
+    SmoothGrad explainer for neural networks.
+    
+    Computes attributions by averaging gradients over noisy copies of the
+    input. The noise helps smooth out local fluctuations in the gradient
+    landscape, producing more interpretable saliency maps.
+    
+    Algorithm:
+        SmoothGrad(x) = (1/n) * Σ_{i=1}^{n} ∂f(x + ε_i)/∂x
+        where ε_i ~ N(0, σ²I) or U(-σ, σ)
+    
+    Attributes:
+        model: Model adapter with predict_with_gradients() method
+        feature_names: List of feature names
+        class_names: List of class names (for classification)
+        n_samples: Number of noisy samples to average
+        noise_scale: Standard deviation (Gaussian) or half-range (Uniform)
+        noise_type: Type of noise distribution ("gaussian" or "uniform")
+    
+    Example:
+        >>> explainer = SmoothGradExplainer(adapter, feature_names, n_samples=50)
+        >>> explanation = explainer.explain(instance)
+        >>> print(explanation.explanation_data["feature_attributions"])
+    """
+    
+    def __init__(
+        self,
+        model,
+        feature_names: List[str],
+        class_names: Optional[List[str]] = None,
+        n_samples: int = 50,
+        noise_scale: float = 0.15,
+        noise_type: str = "gaussian"
+    ):
+        """
+        Initialize the SmoothGrad explainer.
+        
+        Args:
+            model: A model adapter with predict_with_gradients() method.
+                   Use PyTorchAdapter for PyTorch models.
+            feature_names: List of input feature names.
+            class_names: List of class names (for classification tasks).
+            n_samples: Number of noisy samples to average. More samples
+                      reduce variance but increase computation. Default: 50.
+            noise_scale: Scale of the noise to add:
+                - For "gaussian": standard deviation (default: 0.15)
+                - For "uniform": half-range, noise in [-scale, scale]
+                Typically set to 10-20% of the input range.
+            noise_type: Type of noise distribution:
+                - "gaussian": Normal distribution N(0, σ²) (default)
+                - "uniform": Uniform distribution U(-σ, σ)
+        
+        Raises:
+            TypeError: If model doesn't have predict_with_gradients method.
+            ValueError: If n_samples < 1, noise_scale < 0, or invalid noise_type.
+        """
+        super().__init__(model)
+        
+        # Validate model has gradient capability
+        if not hasattr(model, 'predict_with_gradients'):
+            raise TypeError(
+                "Model adapter must have predict_with_gradients() method. "
+                "Use PyTorchAdapter for PyTorch models."
+            )
+        
+        # Validate parameters
+        if n_samples < 1:
+            raise ValueError(f"n_samples must be >= 1, got {n_samples}")
+        
+        if noise_scale < 0:
+            raise ValueError(f"noise_scale must be >= 0, got {noise_scale}")
+        
+        if noise_type not in ["gaussian", "uniform"]:
+            raise ValueError(
+                f"noise_type must be 'gaussian' or 'uniform', got '{noise_type}'"
+            )
+        
+        self.feature_names = list(feature_names)
+        self.class_names = list(class_names) if class_names else None
+        self.n_samples = n_samples
+        self.noise_scale = noise_scale
+        self.noise_type = noise_type
+    
+    def _generate_noise(self, shape: tuple) -> np.ndarray:
+        """
+        Generate noise samples based on the configured noise type.
+        
+        Args:
+            shape: Shape of the noise array to generate.
+            
+        Returns:
+            Numpy array of noise samples.
+        """
+        if self.noise_type == "gaussian":
+            return np.random.normal(0, self.noise_scale, shape).astype(np.float32)
+        else:  # uniform
+            return np.random.uniform(
+                -self.noise_scale, 
+                self.noise_scale, 
+                shape
+            ).astype(np.float32)
+    
+    def _compute_smoothgrad(
+        self,
+        instance: np.ndarray,
+        target_class: Optional[int] = None,
+        method: str = "smoothgrad",
+        absolute_value: bool = False
+    ) -> tuple:
+        """
+        Compute SmoothGrad attributions for a single instance.
+        
+        Args:
+            instance: Input instance (1D array).
+            target_class: Target class for gradient computation.
+            method: Aggregation method:
+                - "smoothgrad": Average of gradients (default)
+                - "smoothgrad_squared": Average of squared gradients
+                - "vargrad": Variance of gradients
+            absolute_value: If True, take absolute value of final attributions.
+            
+        Returns:
+            Tuple of (attributions, std_attributions) arrays.
+        """
+        instance = instance.flatten().astype(np.float32)
+        
+        # Collect gradients for all noisy samples
+        all_gradients = []
+        
+        for _ in range(self.n_samples):
+            # Add noise to input
+            if self.noise_scale > 0:
+                noise = self._generate_noise(instance.shape)
+                noisy_input = instance + noise
+            else:
+                noisy_input = instance.copy()
+            
+            # Compute gradient
+            _, gradients = self.model.predict_with_gradients(
+                noisy_input.reshape(1, -1),
+                target_class=target_class
+            )
+            all_gradients.append(gradients.flatten())
+        
+        all_gradients = np.array(all_gradients)  # Shape: (n_samples, n_features)
+        
+        # Compute attributions based on method
+        if method == "smoothgrad":
+            attributions = np.mean(all_gradients, axis=0)
+            std_attributions = np.std(all_gradients, axis=0)
+        elif method == "smoothgrad_squared":
+            # Average of squared gradients
+            squared_gradients = all_gradients ** 2
+            attributions = np.mean(squared_gradients, axis=0)
+            std_attributions = np.std(squared_gradients, axis=0)
+        elif method == "vargrad":
+            # Variance of gradients
+            attributions = np.var(all_gradients, axis=0)
+            std_attributions = np.zeros_like(attributions)  # No std for variance
+        else:
+            raise ValueError(
+                f"Unknown method: '{method}'. "
+                f"Use 'smoothgrad', 'smoothgrad_squared', or 'vargrad'."
+            )
+        
+        # Apply absolute value if requested
+        if absolute_value:
+            attributions = np.abs(attributions)
+        
+        return attributions, std_attributions
+    
+    def explain(
+        self,
+        instance: np.ndarray,
+        target_class: Optional[int] = None,
+        method: str = "smoothgrad",
+        absolute_value: bool = False
+    ) -> Explanation:
+        """
+        Generate SmoothGrad explanation for an instance.
+        
+        Args:
+            instance: 1D numpy array of input features.
+            target_class: For classification, which class to explain.
+                         If None, uses the predicted class.
+            method: Aggregation method:
+                - "smoothgrad": Average of gradients (default)
+                - "smoothgrad_squared": Average of squared gradients (sharper)
+                - "vargrad": Variance of gradients (uncertainty)
+            absolute_value: If True, return absolute values of attributions.
+                           Useful for feature importance without direction.
+        
+        Returns:
+            Explanation object with feature attributions.
+        
+        Example:
+            >>> explanation = explainer.explain(instance)
+            >>> print(explanation.explanation_data["feature_attributions"])
+        """
+        instance = np.array(instance).flatten().astype(np.float32)
+        
+        # Determine target class if not specified
+        if target_class is None and self.class_names:
+            predictions = self.model.predict(instance.reshape(1, -1))
+            target_class = int(np.argmax(predictions))
+        
+        # Compute SmoothGrad
+        attributions, std_attributions = self._compute_smoothgrad(
+            instance, target_class, method, absolute_value
+        )
+        
+        # Build attributions dict
+        attributions_dict = {
+            fname: float(attributions[i])
+            for i, fname in enumerate(self.feature_names)
+        }
+        
+        # Determine explainer name based on method
+        if method == "smoothgrad":
+            explainer_name = "SmoothGrad"
+        elif method == "smoothgrad_squared":
+            explainer_name = "SmoothGrad_Squared"
+        elif method == "vargrad":
+            explainer_name = "VarGrad"
+        else:
+            explainer_name = f"SmoothGrad_{method}"
+        
+        # Determine class name
+        if self.class_names and target_class is not None:
+            label_name = self.class_names[target_class]
+        else:
+            label_name = f"class_{target_class}" if target_class is not None else "output"
+        
+        explanation_data = {
+            "feature_attributions": attributions_dict,
+            "attributions_raw": attributions.tolist(),
+            "attributions_std": std_attributions.tolist(),
+            "n_samples": self.n_samples,
+            "noise_scale": self.noise_scale,
+            "noise_type": self.noise_type,
+            "method": method,
+            "absolute_value": absolute_value
+        }
+        
+        return Explanation(
+            explainer_name=explainer_name,
+            target_class=label_name,
+            explanation_data=explanation_data
+        )
+    
+    def explain_batch(
+        self,
+        X: np.ndarray,
+        target_class: Optional[int] = None,
+        method: str = "smoothgrad",
+        absolute_value: bool = False
+    ) -> List[Explanation]:
+        """
+        Generate explanations for multiple instances.
+        
+        Args:
+            X: 2D numpy array of instances (n_samples, n_features),
+               or 1D array for single instance.
+            target_class: Target class for all instances. If None,
+                         uses predicted class for each instance.
+            method: Aggregation method (see explain()).
+            absolute_value: If True, return absolute values.
+        
+        Returns:
+            List of Explanation objects.
+        
+        Example:
+            >>> explanations = explainer.explain_batch(X_test[:10])
+            >>> for exp in explanations:
+            ...     print(exp.target_class)
+        """
+        X = np.array(X)
+        if X.ndim == 1:
+            X = X.reshape(1, -1)
+        
+        return [
+            self.explain(
+                X[i], 
+                target_class=target_class,
+                method=method,
+                absolute_value=absolute_value
+            )
+            for i in range(X.shape[0])
+        ]
+    
+    def compute_with_baseline_comparison(
+        self,
+        instance: np.ndarray,
+        target_class: Optional[int] = None
+    ) -> dict:
+        """
+        Compare SmoothGrad with raw gradient for analysis.
+        
+        Useful for understanding the smoothing effect and validating
+        that SmoothGrad is reducing noise appropriately.
+        
+        Args:
+            instance: Input instance.
+            target_class: Target class for gradient computation.
+        
+        Returns:
+            Dictionary containing:
+                - smoothgrad: SmoothGrad attributions
+                - raw_gradient: Single gradient (no noise)
+                - smoothgrad_squared: Squared variant
+                - vargrad: Variance of gradients
+                - correlation: Correlation between smoothgrad and raw
+        """
+        instance = np.array(instance).flatten().astype(np.float32)
+        
+        # Determine target class
+        if target_class is None and self.class_names:
+            predictions = self.model.predict(instance.reshape(1, -1))
+            target_class = int(np.argmax(predictions))
+        
+        # Raw gradient (no noise)
+        _, raw_gradient = self.model.predict_with_gradients(
+            instance.reshape(1, -1),
+            target_class=target_class
+        )
+        raw_gradient = raw_gradient.flatten()
+        
+        # SmoothGrad variants
+        smoothgrad, _ = self._compute_smoothgrad(instance, target_class, "smoothgrad")
+        smoothgrad_squared, _ = self._compute_smoothgrad(instance, target_class, "smoothgrad_squared")
+        vargrad, _ = self._compute_smoothgrad(instance, target_class, "vargrad")
+        
+        # Compute correlation
+        correlation = np.corrcoef(smoothgrad, raw_gradient)[0, 1]
+        
+        return {
+            "smoothgrad": smoothgrad.tolist(),
+            "raw_gradient": raw_gradient.tolist(),
+            "smoothgrad_squared": smoothgrad_squared.tolist(),
+            "vargrad": vargrad.tolist(),
+            "correlation": float(correlation),
+            "n_samples": self.n_samples,
+            "noise_scale": self.noise_scale
+        }
+    
+    def adaptive_noise_scale(
+        self,
+        instance: np.ndarray,
+        percentile: float = 15.0
+    ) -> float:
+        """
+        Compute adaptive noise scale based on input statistics.
+        
+        The original SmoothGrad paper suggests using noise scale
+        proportional to the input range. This method computes an
+        appropriate scale based on the instance.
+        
+        Args:
+            instance: Input instance.
+            percentile: Percentage of input range to use as noise scale.
+                       Default: 15% (recommended in paper).
+        
+        Returns:
+            Recommended noise scale for this instance.
+        """
+        instance = np.array(instance).flatten()
+        input_range = instance.max() - instance.min()
+        
+        # Avoid zero scale for constant inputs
+        if input_range == 0:
+            input_range = np.abs(instance).max()
+        if input_range == 0:
+            input_range = 1.0
+        
+        return float(input_range * percentile / 100.0)