experimaestro 2.0.0a8__py3-none-any.whl → 2.0.0b8__py3-none-any.whl

experimaestro/utils/environment.py

@@ -0,0 +1,148 @@
+"""Environment capture utilities for experiment reproducibility
+
+This module provides functions to capture the full Python environment state
+when experiments are run, including:
+- Git information for editable (development) packages
+- Version information for all installed Python packages
+"""
+
+import sys
+import logging
+from pathlib import Path
+from typing import Optional
+from importlib.metadata import distributions
+
+from experimaestro.utils.git import get_git_info
+
+logger = logging.getLogger("xpm.environment")
+
+
+def get_environment_info() -> dict:
+    """Capture complete environment information for reproducibility
+
+    Returns:
+        Dictionary containing:
+        - python_version: Python interpreter version
+        - packages: Dict of package_name -> version for all installed packages
+        - editable_packages: Dict of package_name -> {version, path, git_info}
+          for packages installed in editable mode
+    """
+    python_version = (
+        f"{sys.version_info.major}.{sys.version_info.minor}.{sys.version_info.micro}"
+    )
+
+    packages = {}
+    editable_packages = {}
+
+    for dist in distributions():
+        name = dist.metadata["Name"]
+        version = dist.metadata["Version"]
+        packages[name] = version
+
+        # Check if this is an editable install by looking for direct_url.json
+        # PEP 610 specifies that editable installs have a direct_url.json
+        # with "dir_info": {"editable": true}
+        direct_url_file = dist._path / "direct_url.json"  # type: ignore
+        if direct_url_file.exists():
+            try:
+                import json
+
+                direct_url = json.loads(direct_url_file.read_text())
+                dir_info = direct_url.get("dir_info", {})
+                if dir_info.get("editable", False):
+                    # Get the source path from the URL
+                    url = direct_url.get("url", "")
+                    if url.startswith("file://"):
+                        source_path = Path(url[7:])  # Remove "file://"
+                        git_info = get_git_info(source_path)
+                        editable_packages[name] = {
+                            "version": version,
+                            "path": str(source_path),
+                            "git": git_info,
+                        }
+            except (json.JSONDecodeError, OSError) as e:
+                logger.debug("Error reading direct_url.json for %s: %s", name, e)
+
+    return {
+        "python_version": python_version,
+        "packages": packages,
+        "editable_packages": editable_packages,
+    }
+
+
+def get_editable_packages_git_info() -> dict:
+    """Get git information for all editable packages
+
+    This is a lighter-weight function that only captures git info for
+    editable packages, without listing all installed packages.
+
+    Returns:
+        Dictionary mapping package_name -> {version, path, git}
+        for packages installed in editable mode
+    """
+    editable_packages = {}
+
+    for dist in distributions():
+        name = dist.metadata["Name"]
+        version = dist.metadata["Version"]
+
+        # Check for editable install via direct_url.json
+        direct_url_file = dist._path / "direct_url.json"  # type: ignore
+        if direct_url_file.exists():
+            try:
+                import json
+
+                direct_url = json.loads(direct_url_file.read_text())
+                dir_info = direct_url.get("dir_info", {})
+                if dir_info.get("editable", False):
+                    url = direct_url.get("url", "")
+                    if url.startswith("file://"):
+                        source_path = Path(url[7:])
+                        git_info = get_git_info(source_path)
+                        editable_packages[name] = {
+                            "version": version,
+                            "path": str(source_path),
+                            "git": git_info,
+                        }
+            except (json.JSONDecodeError, OSError) as e:
+                logger.debug("Error reading direct_url.json for %s: %s", name, e)
+
+    return editable_packages
+
+
+def save_environment_info(path: Path) -> dict:
+    """Save environment information to a JSON file
+
+    Args:
+        path: Path to save the environment info JSON file
+
+    Returns:
+        The environment info dictionary that was saved
+    """
+    import json
+
+    env_info = get_environment_info()
+    path.write_text(json.dumps(env_info, indent=2))
+    logger.info("Saved environment info to %s", path)
+    return env_info
+
+
+def load_environment_info(path: Path) -> Optional[dict]:
+    """Load environment information from a JSON file
+
+    Args:
+        path: Path to the environment info JSON file
+
+    Returns:
+        Environment info dictionary if file exists and is valid, None otherwise
+    """
+    import json
+
+    if not path.exists():
+        return None
+
+    try:
+        return json.loads(path.read_text())
+    except (json.JSONDecodeError, OSError) as e:
+        logger.warning("Error loading environment info from %s: %s", path, e)
+        return None

experimaestro/utils/git.py

@@ -0,0 +1,129 @@
+"""Git utilities for tracking repository state during experiments
+
+This module provides functions to capture git repository information
+when experiments are run, enabling reproducibility by recording
+which code version was used.
+"""
+
+import subprocess
+from pathlib import Path
+from typing import Optional
+import logging
+
+logger = logging.getLogger("xpm.git")
+
+
+def get_git_info(cwd: Optional[Path] = None) -> Optional[dict]:
+    """Get git repository information for a directory
+
+    Args:
+        cwd: Working directory to check (defaults to current working directory)
+
+    Returns:
+        Dictionary with git info if in a git repository, None otherwise.
+        The dictionary contains:
+        - commit: Full commit hash (40 characters)
+        - commit_short: Short commit hash (7 characters)
+        - branch: Current branch name (None if detached HEAD)
+        - dirty: True if working directory has uncommitted changes
+        - message: First line of commit message
+        - author: Author of the commit
+        - date: Commit date in ISO format
+    """
+    if cwd is None:
+        cwd = Path.cwd()
+
+    try:
+        # Check if this is a git repository
+        result = subprocess.run(
+            ["git", "rev-parse", "--is-inside-work-tree"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=False,
+        )
+        if result.returncode != 0:
+            logger.debug("Not a git repository: %s", cwd)
+            return None
+
+        # Get full commit hash
+        commit = subprocess.run(
+            ["git", "rev-parse", "HEAD"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=True,
+        ).stdout.strip()
+
+        # Get short commit hash
+        commit_short = subprocess.run(
+            ["git", "rev-parse", "--short", "HEAD"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=True,
+        ).stdout.strip()
+
+        # Get current branch (may be None for detached HEAD)
+        branch_result = subprocess.run(
+            ["git", "symbolic-ref", "--short", "HEAD"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=False,
+        )
+        branch = branch_result.stdout.strip() if branch_result.returncode == 0 else None
+
+        # Check if working directory is dirty
+        dirty_result = subprocess.run(
+            ["git", "status", "--porcelain"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=True,
+        )
+        dirty = bool(dirty_result.stdout.strip())
+
+        # Get commit message (first line)
+        message = subprocess.run(
+            ["git", "log", "-1", "--format=%s"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=True,
+        ).stdout.strip()
+
+        # Get commit author
+        author = subprocess.run(
+            ["git", "log", "-1", "--format=%an <%ae>"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=True,
+        ).stdout.strip()
+
+        # Get commit date in ISO format
+        date = subprocess.run(
+            ["git", "log", "-1", "--format=%aI"],
+            capture_output=True,
+            text=True,
+            cwd=cwd,
+            check=True,
+        ).stdout.strip()
+
+        return {
+            "commit": commit,
+            "commit_short": commit_short,
+            "branch": branch,
+            "dirty": dirty,
+            "message": message,
+            "author": author,
+            "date": date,
+        }
+
+    except FileNotFoundError:
+        logger.debug("Git command not found")
+        return None
+    except subprocess.CalledProcessError as e:
+        logger.warning("Error getting git info: %s", e)
+        return None

experimaestro/utils/resources.py

@@ -3,7 +3,7 @@ from os import PathLike
 from pathlib import Path
 from typing import Union
 from importlib import resources
-from experimaestro.compat import cached_property
+from functools import cached_property
 
 
 class ResourcePathWrapper(PathLike):

experimaestro/version.py

@@ -0,0 +1,34 @@
+# file generated by setuptools-scm
+# don't change, don't track in version control
+
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "version",
+    "version_tuple",
+    "__commit_id__",
+    "commit_id",
+]
+
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple
+    from typing import Union
+
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+    COMMIT_ID = Union[str, None]
+else:
+    VERSION_TUPLE = object
+    COMMIT_ID = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+commit_id: COMMIT_ID
+__commit_id__: COMMIT_ID
+
+__version__ = version = '2.0.0b8'
+__version_tuple__ = version_tuple = (2, 0, 0, 'b8')
+
+__commit_id__ = commit_id = None

{experimaestro-2.0.0a8.dist-info → experimaestro-2.0.0b8.dist-info}/METADATA

@@ -1,61 +1,92 @@
 Metadata-Version: 2.4
 Name: experimaestro
-Version: 2.0.0a8
-Summary: "Experimaestro is a computer science experiment manager"
-License: GPL-3
+Version: 2.0.0b8
+Summary: Experimaestro is a computer science experiment manager
+Project-URL: Homepage, https://github.com/experimaestro/experimaestro-python
+Project-URL: Documentation, https://experimaestro-python.readthedocs.io/
+Project-URL: Repository, https://github.com/experimaestro/experimaestro-python
+Project-URL: Bug Tracker, https://github.com/experimaestro/experimaestro-python/issues
+Author-email: Benjamin Piwowarski <benjamin@piwowarski.fr>
+License: GPL-3.0-or-later
 License-File: LICENSE
 Keywords: experiment manager
-Author: Benjamin Piwowarski
-Author-email: benjamin@piwowarski.fr
-Requires-Python: >=3.10
 Classifier: Development Status :: 4 - Beta
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Software Development :: Libraries :: Python Modules
-Requires-Dist: arpeggio (>=2,<3)
-Requires-Dist: attrs (>=23.1.0,<24)
-Requires-Dist: click (>=8)
-Requires-Dist: decorator (>=5,<6)
-Requires-Dist: docstring-parser (>=0.15,<1)
-Requires-Dist: fasteners (>=0.19,<1)
-Requires-Dist: flask (>=2.3,<3)
-Requires-Dist: flask-socketio (>=5.3,<6)
-Requires-Dist: gevent (>=25)
-Requires-Dist: gevent-websocket (>=0.10)
-Requires-Dist: huggingface-hub (>0.17)
-Requires-Dist: humanfriendly (>=10)
-Requires-Dist: marshmallow (>=3.20,<4)
-Requires-Dist: mkdocs (>=1.5,<2)
-Requires-Dist: omegaconf (>=2.3,<3)
-Requires-Dist: psutil (>=7,<8)
-Requires-Dist: pyparsing (>=3.1,<4)
-Requires-Dist: pytools (>=2023.1.1,<2024)
-Requires-Dist: pyyaml (>=6.0.1,<7)
-Requires-Dist: requests (>=2.31,<3)
-Requires-Dist: rpyc (>=5,<7)
-Requires-Dist: sortedcontainers (>=2.4,<3)
-Requires-Dist: termcolor (>=2.3,<3)
-Requires-Dist: tqdm (>=4.66.1,<5)
-Requires-Dist: typing-extensions (>=4.2) ; python_version < "3.12"
-Requires-Dist: watchdog (>=2)
+Requires-Python: >=3.10
+Requires-Dist: arpeggio<3,>=2
+Requires-Dist: attrs<24,>=23.1.0
+Requires-Dist: click>=8
+Requires-Dist: decorator<6,>=5
+Requires-Dist: docstring-parser<1,>=0.15
+Requires-Dist: fasteners<1,>=0.19
+Requires-Dist: flask-socketio<6,>=5.3
+Requires-Dist: flask<3,>=2.3
+Requires-Dist: gevent-websocket>=0.10
+Requires-Dist: gevent>=25
+Requires-Dist: huggingface-hub>0.17
+Requires-Dist: humanfriendly>=10
+Requires-Dist: marshmallow<4,>=3.20
+Requires-Dist: omegaconf<3,>=2.3
+Requires-Dist: peewee<4,>=3.17
+Requires-Dist: psutil<8,>=7
+Requires-Dist: pyparsing<4,>=3.1
+Requires-Dist: pyperclip<2,>=1.8
+Requires-Dist: pytools<2024,>=2023.1.1
+Requires-Dist: pyyaml<7,>=6.0.1
+Requires-Dist: requests<3,>=2.31
+Requires-Dist: rpyc<7,>=5
+Requires-Dist: sortedcontainers<3,>=2.4
+Requires-Dist: termcolor<3,>=2.3
+Requires-Dist: textual>=6
+Requires-Dist: tqdm<5,>=4.66.1
+Requires-Dist: typing-extensions>=4.2; python_version < '3.12'
+Requires-Dist: watchdog>=2
+Provides-Extra: dev
+Requires-Dist: docutils>=0.18; extra == 'dev'
+Requires-Dist: mypy>=1.0; extra == 'dev'
+Requires-Dist: pygments>=2.15; extra == 'dev'
+Requires-Dist: pytest-timeout>=2.4.0; extra == 'dev'
+Requires-Dist: pytest>=8.4.1; extra == 'dev'
+Requires-Dist: textual-dev>=1.8.0; extra == 'dev'
+Provides-Extra: docs
+Requires-Dist: myst-parser>=2.0; extra == 'docs'
+Requires-Dist: sphinx-codeautolink>=0.15; extra == 'docs'
+Requires-Dist: sphinx-rtd-theme>=2.0; extra == 'docs'
+Requires-Dist: sphinx>=6; extra == 'docs'
+Provides-Extra: ssh
+Requires-Dist: fabric>=3; extra == 'ssh'
+Requires-Dist: paramiko>=3.3; extra == 'ssh'
 Description-Content-Type: text/markdown
 
 [![PyPI version](https://badge.fury.io/py/experimaestro.svg)](https://badge.fury.io/py/experimaestro)
 [![RTD](https://readthedocs.org/projects/experimaestro-python/badge/?version=latest)](https://experimaestro-python.readthedocs.io)
 
-Experimaestro helps in designing and managing complex workflows. It allows for the definition of tasks and their dependencies, ensuring that each step in a workflow is executed in the correct order. Some key aspects of Experimaestro are:
+Experimaestro helps in designing and managing **complex experimental plans**. It allows for the definition of tasks and their dependencies, ensuring that each step in a workflow is executed in the correct order. Some key aspects of Experimaestro are:
 
 - **Task Automation**: The tool automates repetitive tasks, making it easier to run large-scale experiments. It's particularly useful in scenarios where experiments need to be repeated with different parameters or datasets.
 - **Resource Management**: It efficiently manages computational resources, which is critical when dealing with data-intensive tasks or when running multiple experiments in parallel.
-- **Extensibility**: Experimaestro is designed to be flexible and extensible, allowing users to integrate it with various programming languages and tools commonly used in data science and research.
-- **Reproducibility**: By keeping a detailed record of experiments, including parameters and environments, it aids in ensuring the reproducibility of scientific experiments, which is a fundamental requirement in research.
-- **User Interface**: While primarily a back-end tool, Experimaestro also offers a user interface to help in managing and visualizing workflows.
+- **Reproducibility**: By keeping a detailed record of experiments (the experimental plan in python), including parameters and environments, it aids in ensuring the reproducibility of scientific experiments, which is a fundamental requirement in research.
+- **User Interface**: While primarily a back-end tool, Experimaestro also offers a user interface to help in managing and visualizing workflows (web and text-based).
+
+The full documentation can be read by going to the following URL: [https://experimaestro-python.readthedocs.io](https://experimaestro-python.readthedocs.io). A tutorial (training a CNN on MNIST) is [available on github](https://github.com/experimaestro/experimaestro-demo).
+
+# Screenshots
 
-The full documentation can be read by going to the following URL: [https://experimaestro-python.readthedocs.io](https://experimaestro-python.readthedocs.io)
+## Textual interface (new in v2)
 
+![Experiment screen](docs/source/img/tui-experiments.png)
+
+![Jobs screen](docs/source/img/tui-jobs.png)
+
+![Log screen](docs/source/img/tui-logs.png)
 
 # Install
 
@@ -150,4 +181,3 @@ if __name__ == "__main__":
 ```
 
 which can be launched with `python test.py /tmp/helloworld-workdir`
-

experimaestro-2.0.0b8.dist-info/RECORD

@@ -0,0 +1,187 @@
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