ewoksid02 0.1.0__py3-none-any.whl

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Files changed (54) hide show
  1. ewoksid02/__init__.py +0 -0
  2. ewoksid02/ocl/__init__.py +0 -0
  3. ewoksid02/resources/__init__.py +8 -0
  4. ewoksid02/resources/saxs_loop.json +96 -0
  5. ewoksid02/resources/template_saxs.yaml +37 -0
  6. ewoksid02/scripts/__init__.py +0 -0
  7. ewoksid02/scripts/__main__.py +70 -0
  8. ewoksid02/scripts/parsers.py +224 -0
  9. ewoksid02/scripts/saxs/__init__.py +0 -0
  10. ewoksid02/scripts/saxs/main.py +255 -0
  11. ewoksid02/scripts/saxs/slurm_python_post_script.py +3 -0
  12. ewoksid02/scripts/saxs/slurm_python_pre_script.py +5 -0
  13. ewoksid02/scripts/utils.py +21 -0
  14. ewoksid02/scripts/xpcs/__init__.py +0 -0
  15. ewoksid02/scripts/xpcs/__main__.py +3 -0
  16. ewoksid02/tasks/__init__.py +7 -0
  17. ewoksid02/tasks/averagetask.py +179 -0
  18. ewoksid02/tasks/azimuthaltask.py +272 -0
  19. ewoksid02/tasks/cavingtask.py +170 -0
  20. ewoksid02/tasks/dahuprocessingtask.py +71 -0
  21. ewoksid02/tasks/end.py +35 -0
  22. ewoksid02/tasks/id02processingtask.py +2582 -0
  23. ewoksid02/tasks/looptask.py +672 -0
  24. ewoksid02/tasks/metadatatask.py +879 -0
  25. ewoksid02/tasks/normalizationtask.py +204 -0
  26. ewoksid02/tasks/scalerstask.py +46 -0
  27. ewoksid02/tasks/secondaryscatteringtask.py +159 -0
  28. ewoksid02/tasks/sumtask.py +45 -0
  29. ewoksid02/tests/__init__.py +3 -0
  30. ewoksid02/tests/conftest.py +639 -0
  31. ewoksid02/tests/debug.py +64 -0
  32. ewoksid02/tests/test_2scat_node.py +119 -0
  33. ewoksid02/tests/test_ave_node.py +106 -0
  34. ewoksid02/tests/test_azim_node.py +89 -0
  35. ewoksid02/tests/test_cave_node.py +118 -0
  36. ewoksid02/tests/test_norm_node.py +190 -0
  37. ewoksid02/tests/test_saxs.py +69 -0
  38. ewoksid02/tests/test_sumtask.py +10 -0
  39. ewoksid02/tests/utils.py +514 -0
  40. ewoksid02/utils/__init__.py +22 -0
  41. ewoksid02/utils/average.py +158 -0
  42. ewoksid02/utils/blissdata.py +1157 -0
  43. ewoksid02/utils/caving.py +851 -0
  44. ewoksid02/utils/cupyutils.py +42 -0
  45. ewoksid02/utils/io.py +722 -0
  46. ewoksid02/utils/normalization.py +804 -0
  47. ewoksid02/utils/pyfai.py +424 -0
  48. ewoksid02/utils/secondaryscattering.py +597 -0
  49. ewoksid02-0.1.0.dist-info/METADATA +76 -0
  50. ewoksid02-0.1.0.dist-info/RECORD +54 -0
  51. ewoksid02-0.1.0.dist-info/WHEEL +5 -0
  52. ewoksid02-0.1.0.dist-info/entry_points.txt +5 -0
  53. ewoksid02-0.1.0.dist-info/licenses/LICENSE.md +20 -0
  54. ewoksid02-0.1.0.dist-info/top_level.txt +1 -0
@@ -0,0 +1,71 @@
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+ # -*- coding: utf-8 -*-
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+
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+ import json
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+ import os
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+
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+ import gevent
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+ import tango
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+ from ewokscore import Task
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+
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+ # Deprecated, to be substituted by the Id02ProcessingTask children
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+
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+
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+ class SingleDetector(
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+ Task, input_names=["parameters"], output_names=["files", "runtime", "logging"]
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+ ):
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+ """
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+ Trigger DAHU in the workflow.
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+ """
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+
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+ def tango_execute(self, N, *args, **kwargs):
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+
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+ for i in range(N):
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+ try:
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+ return self._proxy.command_inout(*args, **kwargs)
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+ except tango.CommunicationFailed:
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+ if i == N - 1:
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+ raise
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+
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+ gevent.sleep(i**2)
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+
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+ def run(self):
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+
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+ proxies = ["dau/dahu/2", "dau/dahu/4", "dau/dahu/5", "dau/dahu/1", "dau/dahu/3"]
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+
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+ params = self.inputs["parameters"]
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+
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+ # Create the output dir as DAHU has trouble to do it properly
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+ if "output_dir" in params:
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+ os.makedirs(params["output_dir"], exist_ok=True)
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+
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+ for p in proxies:
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+ try:
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+ params["dahu_proxy"] = p
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+ self._proxy = tango.DeviceProxy(p)
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+
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+ pset = ["id02.singledetector", json.dumps(params)]
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+
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+ jobid = self.tango_execute(2, "startJob", pset)
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+ except Exception:
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+ print(f"Unable to submit job on {p}")
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+ continue
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+ break
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+ else:
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+ raise RuntimeError("Unable to find a DAHU server to submit the job!")
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+
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+ print(f"DAHU job id: {jobid} on {p}")
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+ gevent.sleep(2)
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+ self.tango_execute(30, "waitJob", jobid)
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+
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+ ret = json.loads(self.tango_execute(5, "getJobOutput", jobid))
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+
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+ # print(ret)
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+
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+ self.outputs["files"] = ret["files"]
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+ self.outputs["runtime"] = ret["job_runtime"]
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+ self.outputs["logging"] = ret["logging"]
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+
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+ if "error" in ret:
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+ print(ret["error"])
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+
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+ raise RuntimeError(f"DAHU job failed. \n{ret['error']}")
ewoksid02/tasks/end.py ADDED
@@ -0,0 +1,35 @@
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+ from ewokscore import Task
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+ import logging
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+ import gc
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+
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+ logger = logging.getLogger(__name__)
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+
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+
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+ class EndTask(
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+ Task,
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+ optional_input_names=[
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+ "detector_name",
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+ "scan_memory_url",
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+ "filename_data",
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+ "scan_nb",
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+ "index_range_last",
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+ "loop_nb",
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+ ],
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+ output_names=[
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+ "detector_name",
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+ "scan_memory_url",
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+ "filename_data",
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+ "scan_nb",
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+ "index_range_last",
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+ "loop_nb",
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+ ],
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+ ):
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+ def run(self):
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+ logger.warning("\n\n\tEndTask. End of the workflow\n")
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+ self.outputs.detector_name = self.get_input_value("detector_name")
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+ self.outputs.scan_memory_url = self.get_input_value("scan_memory_url")
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+ self.outputs.filename_data = self.get_input_value("filename_data")
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+ self.outputs.scan_nb = self.get_input_value("scan_nb")
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+ self.outputs.index_range_last = self.get_input_value("index_range_last")
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+ self.outputs.loop_nb = self.get_input_value("loop_nb")
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+ gc.collect()