esa-snappy 1.0.8__cp39-none-any.whl → 1.0.9__cp39-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- esa_snappy/snapista/demo/snapista-demo-bandmaths.ipynb +418 -418
- esa_snappy/snapista/demo/snapista-demo-binning.ipynb +438 -438
- esa_snappy/snappyutil.py +10 -3
- {esa_snappy-1.0.8.dist-info → esa_snappy-1.0.9.dist-info}/METADATA +3 -2
- {esa_snappy-1.0.8.dist-info → esa_snappy-1.0.9.dist-info}/RECORD +8 -12
- {esa_snappy-1.0.8.dist-info → esa_snappy-1.0.9.dist-info}/WHEEL +1 -1
- esa_snappy/snapista/demo/data/snapista_demo_bandmaths.xml +0 -78
- esa_snappy/snapista/demo/data/snapista_demo_bandmaths_result.nc +0 -0
- esa_snappy/snapista/demo/data/snapista_demo_binning.xml +0 -68
- esa_snappy/snapista/demo/data/snapista_demo_binning_result.nc +0 -0
- {esa_snappy-1.0.8.dist-info → esa_snappy-1.0.9.dist-info/licenses}/LICENSE +0 -0
- {esa_snappy-1.0.8.dist-info → esa_snappy-1.0.9.dist-info}/top_level.txt +0 -0
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"cells": [
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"cell_type": "markdown",
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"id": "eff9f1b9-ebce-4968-aa1d-eb33efd37813",
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"metadata": {},
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"source": [
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"## Snapista Demo notebook - Using band maths, setting up operators, creating and running a graph..."
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"cell_type": "code",
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"execution_count": 1,
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"id": "77db105d",
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"metadata": {},
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"outputs": [
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"Python version: 3.11.9 | packaged by Anaconda, Inc. | (main, Apr 19 2024, 16:40:41) [MSC v.1916 64 bit (AMD64)]\n",
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"Location of esa_snappy package: D:\\olaf\\miniconda3_py311\\Lib\\site-packages\\esa_snappy\n"
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]
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}
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],
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"source": [
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"# Some information...\n",
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"\n",
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"import os\n",
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"import sys\n",
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"print(\"Python version: \" + sys.version)\n",
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"\n",
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"import sysconfig\n",
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"print(\"Location of esa_snappy package: \" + sysconfig.get_paths()['purelib'] + os.sep + \"esa_snappy\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"id": "f3b2ca32-63fc-4a92-8be4-5f459be87a9f",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Import esa_snappy and snapista...\n",
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"\n",
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"import esa_snappy\n",
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"import snapista\n",
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"\n",
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"from snapista import Graph\n",
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"from snapista import Operator\n",
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"from snapista import read_file\n",
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"from snapista import TargetBand\n",
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"from snapista import TargetBandDescriptors"
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]
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{
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"cell_type": "code",
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"execution_count": 3,
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"id": "d0ac6a29-c799-41b2-b028-e55a3315de63",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Set up a graph...\n",
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"\n",
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"try:\n",
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" g = Graph()\n",
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"except Exception as ex:\n",
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" print(\"Cannot set up Snapista Graph():\", ex)"
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"cell_type": "code",
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"execution_count": 4,
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"id": "1a94bc96-3104-4726-b01c-48fad9cfb5d6",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Add 'Read' operator to the graph for reading example input...\n",
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"\n",
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"g.add_node(operator=Operator(\"Read\", file='./data/subset_0_of_S3A_OL_1_ERR____20160701T092853_20160701T093053_20170919T102725_0119_006_036______MR1_R_NT_002.nc'), node_id=\"Read\")\n"
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{
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"cell_type": "code",
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"execution_count": 5,
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"id": "96b93cd5-2f58-442b-88c3-ce4cbc793661",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Set up a 'BandMaths' operator to compute a simple NDVI. Set up a target band for NDVI result...\n",
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"\n",
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"band_maths = Operator('BandMaths')\n",
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"\n",
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"ndvi = TargetBand(name='ndvi', expression='(Oa08_radiance - Oa17_radiance)/(Oa08_radiance + Oa17_radiance)')\n",
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" \n",
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"band_maths.targetBandDescriptors = TargetBandDescriptors([ndvi])"
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"cell_type": "code",
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"execution_count": 6,
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"id": "1564302c-f7a2-47a2-a5f6-85147b88536b",
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"targetBandDescriptors <snapista.target_band_descriptors.TargetBandDescriptors object at 0x000001B75A9730D0>\n",
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"Instance TargetBandDescriptors: True\n",
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"Instance Aggregators: False\n",
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"Instance BinningOutputBands: False\n",
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"Instance BinningVariables: False\n",
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"Instance str: False\n"
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}
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],
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"source": [
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"# Add 'BandMaths' operator to the graph...\n",
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"\n",
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"g.add_node(operator=band_maths, node_id=\"BandMaths\" ,source='Read')"
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"cell_type": "code",
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"execution_count": 7,
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"id": "6558126a-e281-497d-a365-3a6b0497762c",
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"metadata": {},
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"outputs": [
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"data": {
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"text/plain": [
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"Operator('BandMerge', sourceBandNames='None', geographicError='1.0E-5f', source='['Read', 'BandMaths']')"
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"execution_count": 7,
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"metadata": {},
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"output_type": "execute_result"
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],
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"source": [
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"# Set up a 'Merge' operator to merge input with NDVI result...\n",
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"\n",
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"merge = Operator(\"BandMerge\", source=[\"Read\", \"BandMaths\"])\n",
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"\n",
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"merge"
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"cell_type": "code",
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"execution_count": 8,
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"id": "216903df-8ef4-403b-9437-5653733120fb",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Add 'Merge' operator to the graph...\n",
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"\n",
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"g.add_node(operator=merge, node_id=\"Merge\", source=[\"Read\", \"BandMaths\"])"
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"cell_type": "code",
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"execution_count": 9,
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"id": "cc5346c1-d9f6-49b2-8f7a-a59b9104e589",
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"metadata": {},
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"outputs": [
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"data": {
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"text/plain": [
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"Operator('Subset', bandNames='Oa08_radiance,Oa17_radiance,ndvi', tiePointGridNames='None', region='None', referenceBand='None', geoRegion='None', subSamplingX='1', subSamplingY='1', fullSwath='false', copyMetadata='false')"
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"execution_count": 9,
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"output_type": "execute_result"
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],
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"source": [
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"# Set up a 'Subset' operator to extract just three bands...\n",
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"\n",
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"subset = Operator('Subset', bandNames=\"Oa08_radiance,Oa17_radiance,ndvi\")\n",
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"cell_type": "code",
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"execution_count": 10,
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"id": "5120cf7c-9fd4-4c50-a90c-38800b6ba01d",
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"source": [
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"# Add 'Subset' operator to the graph...\n",
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"\n",
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"g.add_node(operator=subset, node_id=\"Subset\", source='Merge')"
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"execution_count": 11,
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"id": "8f90a68b-d124-428e-bdf6-1f3ea070c667",
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"data": {
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"text/plain": [
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"Operator('Write', file='None', formatName='BEAM-DIMAP', deleteOutputOnFailure='true', writeEntireTileRows='false', clearCacheAfterRowWrite='false')"
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"execution_count": 11,
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],
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"source": [
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"# Set up a 'Write' operator to write final target product with the three bands...\n",
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"write = Operator(\"Write\")\n",
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"execution_count": 12,
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"id": "0548a3a6-cf3c-4f26-a48d-0e92556ee09c",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Add 'Write' operator to the graph. Define a NetCDF output file...\n",
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"\n",
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"g.add_node(operator=Operator(\"Write\", file='./data/snapista_demo_bandmaths_result.nc', formatName='NetCDF4-BEAM'), node_id=\"Write\", source='Subset')"
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"execution_count": 13,
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"id": "825327d3-cc7f-4a1d-840d-52d40a39c4fd",
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"text": [
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"<graph>\n",
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" <version>1.0</version>\n",
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" <node id=\"Read\">\n",
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" <operator>Read</operator>\n",
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" <sources/>\n",
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" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
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" <bandNames/>\n",
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" <copyMetadata>true</copyMetadata>\n",
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" <file>./data/subset_0_of_S3A_OL_1_ERR____20160701T092853_20160701T093053_20170919T102725_0119_006_036______MR1_R_NT_002.nc</file>\n",
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" <formatName/>\n",
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" <geometryRegion/>\n",
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" <maskNames/>\n",
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" <pixelRegion/>\n",
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" <useAdvancedOptions>false</useAdvancedOptions>\n",
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" </parameters>\n",
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" </node>\n",
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" <node id=\"BandMaths\">\n",
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" <operator>BandMaths</operator>\n",
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" <sources>\n",
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" </sources>\n",
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" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
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" <targetBands>\n",
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" <targetBand>\n",
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" <name>ndvi</name>\n",
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" <expression>(Oa08_radiance - Oa17_radiance)/(Oa08_radiance + Oa17_radiance)</expression>\n",
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" <description/>\n",
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" <unit/>\n",
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" <no_data_value>NaN</no_data_value>\n",
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" </targetBand>\n",
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" </targetBands>\n",
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" <variables/>\n",
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" </parameters>\n",
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" </node>\n",
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" <node id=\"Merge\">\n",
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" <operator>BandMerge</operator>\n",
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" <sources>\n",
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" <sourceProduct.1 refid=\"BandMaths\"/>\n",
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" </sources>\n",
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" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
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" <geographicError>1.0E-5f</geographicError>\n",
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" <sourceBandNames/>\n",
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" </parameters>\n",
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" </node>\n",
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" <node id=\"Subset\">\n",
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" <operator>Subset</operator>\n",
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" <sources>\n",
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294
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" <sourceProduct refid=\"Merge\"/>\n",
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" </sources>\n",
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296
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" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
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297
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" <bandNames>Oa08_radiance,Oa17_radiance,ndvi</bandNames>\n",
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298
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" <copyMetadata>false</copyMetadata>\n",
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" <fullSwath>false</fullSwath>\n",
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" <subSamplingY>1</subSamplingY>\n",
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" <tiePointGridNames/>\n",
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" </parameters>\n",
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" </node>\n",
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" <sources>\n",
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311
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313
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" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
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314
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" <clearCacheAfterRowWrite>false</clearCacheAfterRowWrite>\n",
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315
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" <deleteOutputOnFailure>true</deleteOutputOnFailure>\n",
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316
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" <file>./data/snapista_demo_bandmaths_result.nc</file>\n",
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317
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" <formatName>NetCDF4-BEAM</formatName>\n",
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318
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" <writeEntireTileRows>false</writeEntireTileRows>\n",
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" </parameters>\n",
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" </node>\n",
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"</graph>\n",
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"\n"
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"source": [
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"# View graph in XML representation...\n",
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"g.view()"
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]
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},
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{
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"cell_type": "code",
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|
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"execution_count": 14,
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|
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"id": "3328eb96-de62-4fbe-9f05-f0266b22b69d",
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|
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"metadata": {},
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|
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"outputs": [
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|
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{
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|
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"name": "stdout",
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|
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"output_type": "stream",
|
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|
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"text": [
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|
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"Processing the graph, this may take a while. Please wait...\n",
|
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|
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"Executing processing graph\n",
|
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|
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"15%30%45%60%...70%..90% done.\n",
|
|
345
|
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"SEVERE: org.esa.snap.runtime.Engine: Failed to modify class loader field 'usr_paths'\n",
|
|
346
|
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"java.lang.NoSuchMethodException: java.lang.ClassLoader.initializePath(java.lang.String)\n",
|
|
347
|
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"\tat java.base/java.lang.Class.getDeclaredMethod(Class.java:2848)\n",
|
|
348
|
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"\tat org.esa.snap.runtime.Engine.setJavaLibraryPath(Engine.java:286)\n",
|
|
349
|
-
"\tat org.esa.snap.runtime.Engine.setJavaLibraryPath(Engine.java:265)\n",
|
|
350
|
-
"\tat org.esa.snap.runtime.Engine.<init>(Engine.java:46)\n",
|
|
351
|
-
"\tat org.esa.snap.runtime.Engine.start(Engine.java:117)\n",
|
|
352
|
-
"\tat org.esa.snap.runtime.Engine.start(Engine.java:90)\n",
|
|
353
|
-
"\tat org.esa.snap.runtime.Launcher.run(Launcher.java:51)\n",
|
|
354
|
-
"\tat org.esa.snap.runtime.Launcher.main(Launcher.java:31)\n",
|
|
355
|
-
"\tat java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\n",
|
|
356
|
-
"\tat java.base/java.lang.reflect.Method.invoke(Method.java:580)\n",
|
|
357
|
-
"\tat com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:84)\n",
|
|
358
|
-
"\tat com.exe4j.runtime.WinLauncher.main(WinLauncher.java:94)\n",
|
|
359
|
-
"\tat com.install4j.runtime.launcher.WinLauncher.main(WinLauncher.java:25)\n",
|
|
360
|
-
"\n",
|
|
361
|
-
"INFO: org.esa.snap.core.gpf.operators.tooladapter.ToolAdapterIO: Initializing external tool adapters\n",
|
|
362
|
-
"INFO: org.esa.snap.core.util.EngineVersionCheckActivator: Please check regularly for new updates for the best SNAP experience.\n",
|
|
363
|
-
"WARNING: org.esa.snap.dataio.netcdf.util.MetadataUtils: Missing configuration property 'snap.dataio.netcdf.metadataElementLimit'. Using default (100).\n",
|
|
364
|
-
"4280 [main] INFO serverStartup - Nc4Iosp: NetCDF-4 C library loaded (jna_path='C:\\Users\\olafd\\.snap\\auxdata\\netcdf_natives\\12.0.0.0\\amd64', libname='netcdf').\n",
|
|
365
|
-
"4287 [main] INFO serverStartup - NetcdfLoader: set log level: old=0 new=0\n",
|
|
366
|
-
"4287 [main] INFO serverStartup - Nc4Iosp: set log level: old=0 new=0\n",
|
|
367
|
-
"Processing finished successfully.\n"
|
|
368
|
-
]
|
|
369
|
-
},
|
|
370
|
-
{
|
|
371
|
-
"data": {
|
|
372
|
-
"text/plain": [
|
|
373
|
-
"0"
|
|
374
|
-
]
|
|
375
|
-
},
|
|
376
|
-
"execution_count": 14,
|
|
377
|
-
"metadata": {},
|
|
378
|
-
"output_type": "execute_result"
|
|
379
|
-
}
|
|
380
|
-
],
|
|
381
|
-
"source": [
|
|
382
|
-
"# Save graph as XML file, then run it...\n",
|
|
383
|
-
"\n",
|
|
384
|
-
"g.save_graph('./data/snapista_demo_bandmaths.xml')\n",
|
|
385
|
-
"g.run()"
|
|
386
|
-
]
|
|
387
|
-
},
|
|
388
|
-
{
|
|
389
|
-
"cell_type": "code",
|
|
390
|
-
"execution_count": null,
|
|
391
|
-
"id": "eaef2574-6a7d-484b-86f9-69f8f4b531e3",
|
|
392
|
-
"metadata": {},
|
|
393
|
-
"outputs": [],
|
|
394
|
-
"source": []
|
|
395
|
-
}
|
|
396
|
-
],
|
|
397
|
-
"metadata": {
|
|
398
|
-
"kernelspec": {
|
|
399
|
-
"display_name": "Python 3 (ipykernel)",
|
|
400
|
-
"language": "python",
|
|
401
|
-
"name": "python3"
|
|
402
|
-
},
|
|
403
|
-
"language_info": {
|
|
404
|
-
"codemirror_mode": {
|
|
405
|
-
"name": "ipython",
|
|
406
|
-
"version": 3
|
|
407
|
-
},
|
|
408
|
-
"file_extension": ".py",
|
|
409
|
-
"mimetype": "text/x-python",
|
|
410
|
-
"name": "python",
|
|
411
|
-
"nbconvert_exporter": "python",
|
|
412
|
-
"pygments_lexer": "ipython3",
|
|
413
|
-
"version": "3.11.9"
|
|
414
|
-
}
|
|
415
|
-
},
|
|
416
|
-
"nbformat": 4,
|
|
417
|
-
"nbformat_minor": 5
|
|
418
|
-
}
|
|
1
|
+
{
|
|
2
|
+
"cells": [
|
|
3
|
+
{
|
|
4
|
+
"cell_type": "markdown",
|
|
5
|
+
"id": "eff9f1b9-ebce-4968-aa1d-eb33efd37813",
|
|
6
|
+
"metadata": {},
|
|
7
|
+
"source": [
|
|
8
|
+
"## Snapista Demo notebook - Using band maths, setting up operators, creating and running a graph..."
|
|
9
|
+
]
|
|
10
|
+
},
|
|
11
|
+
{
|
|
12
|
+
"cell_type": "code",
|
|
13
|
+
"execution_count": 1,
|
|
14
|
+
"id": "77db105d",
|
|
15
|
+
"metadata": {},
|
|
16
|
+
"outputs": [
|
|
17
|
+
{
|
|
18
|
+
"name": "stdout",
|
|
19
|
+
"output_type": "stream",
|
|
20
|
+
"text": [
|
|
21
|
+
"Python version: 3.11.9 | packaged by Anaconda, Inc. | (main, Apr 19 2024, 16:40:41) [MSC v.1916 64 bit (AMD64)]\n",
|
|
22
|
+
"Location of esa_snappy package: D:\\olaf\\miniconda3_py311\\Lib\\site-packages\\esa_snappy\n"
|
|
23
|
+
]
|
|
24
|
+
}
|
|
25
|
+
],
|
|
26
|
+
"source": [
|
|
27
|
+
"# Some information...\n",
|
|
28
|
+
"\n",
|
|
29
|
+
"import os\n",
|
|
30
|
+
"import sys\n",
|
|
31
|
+
"print(\"Python version: \" + sys.version)\n",
|
|
32
|
+
"\n",
|
|
33
|
+
"import sysconfig\n",
|
|
34
|
+
"print(\"Location of esa_snappy package: \" + sysconfig.get_paths()['purelib'] + os.sep + \"esa_snappy\")"
|
|
35
|
+
]
|
|
36
|
+
},
|
|
37
|
+
{
|
|
38
|
+
"cell_type": "code",
|
|
39
|
+
"execution_count": 2,
|
|
40
|
+
"id": "f3b2ca32-63fc-4a92-8be4-5f459be87a9f",
|
|
41
|
+
"metadata": {},
|
|
42
|
+
"outputs": [],
|
|
43
|
+
"source": [
|
|
44
|
+
"# Import esa_snappy and snapista...\n",
|
|
45
|
+
"\n",
|
|
46
|
+
"import esa_snappy\n",
|
|
47
|
+
"import snapista\n",
|
|
48
|
+
"\n",
|
|
49
|
+
"from snapista import Graph\n",
|
|
50
|
+
"from snapista import Operator\n",
|
|
51
|
+
"from snapista import read_file\n",
|
|
52
|
+
"from snapista import TargetBand\n",
|
|
53
|
+
"from snapista import TargetBandDescriptors"
|
|
54
|
+
]
|
|
55
|
+
},
|
|
56
|
+
{
|
|
57
|
+
"cell_type": "code",
|
|
58
|
+
"execution_count": 3,
|
|
59
|
+
"id": "d0ac6a29-c799-41b2-b028-e55a3315de63",
|
|
60
|
+
"metadata": {},
|
|
61
|
+
"outputs": [],
|
|
62
|
+
"source": [
|
|
63
|
+
"# Set up a graph...\n",
|
|
64
|
+
"\n",
|
|
65
|
+
"try:\n",
|
|
66
|
+
" g = Graph()\n",
|
|
67
|
+
"except Exception as ex:\n",
|
|
68
|
+
" print(\"Cannot set up Snapista Graph():\", ex)"
|
|
69
|
+
]
|
|
70
|
+
},
|
|
71
|
+
{
|
|
72
|
+
"cell_type": "code",
|
|
73
|
+
"execution_count": 4,
|
|
74
|
+
"id": "1a94bc96-3104-4726-b01c-48fad9cfb5d6",
|
|
75
|
+
"metadata": {},
|
|
76
|
+
"outputs": [],
|
|
77
|
+
"source": [
|
|
78
|
+
"# Add 'Read' operator to the graph for reading example input...\n",
|
|
79
|
+
"\n",
|
|
80
|
+
"g.add_node(operator=Operator(\"Read\", file='./data/subset_0_of_S3A_OL_1_ERR____20160701T092853_20160701T093053_20170919T102725_0119_006_036______MR1_R_NT_002.nc'), node_id=\"Read\")\n"
|
|
81
|
+
]
|
|
82
|
+
},
|
|
83
|
+
{
|
|
84
|
+
"cell_type": "code",
|
|
85
|
+
"execution_count": 5,
|
|
86
|
+
"id": "96b93cd5-2f58-442b-88c3-ce4cbc793661",
|
|
87
|
+
"metadata": {},
|
|
88
|
+
"outputs": [],
|
|
89
|
+
"source": [
|
|
90
|
+
"# Set up a 'BandMaths' operator to compute a simple NDVI. Set up a target band for NDVI result...\n",
|
|
91
|
+
"\n",
|
|
92
|
+
"band_maths = Operator('BandMaths')\n",
|
|
93
|
+
"\n",
|
|
94
|
+
"ndvi = TargetBand(name='ndvi', expression='(Oa08_radiance - Oa17_radiance)/(Oa08_radiance + Oa17_radiance)')\n",
|
|
95
|
+
" \n",
|
|
96
|
+
"band_maths.targetBandDescriptors = TargetBandDescriptors([ndvi])"
|
|
97
|
+
]
|
|
98
|
+
},
|
|
99
|
+
{
|
|
100
|
+
"cell_type": "code",
|
|
101
|
+
"execution_count": 6,
|
|
102
|
+
"id": "1564302c-f7a2-47a2-a5f6-85147b88536b",
|
|
103
|
+
"metadata": {},
|
|
104
|
+
"outputs": [
|
|
105
|
+
{
|
|
106
|
+
"name": "stdout",
|
|
107
|
+
"output_type": "stream",
|
|
108
|
+
"text": [
|
|
109
|
+
"targetBandDescriptors <snapista.target_band_descriptors.TargetBandDescriptors object at 0x000001B75A9730D0>\n",
|
|
110
|
+
"Instance TargetBandDescriptors: True\n",
|
|
111
|
+
"Instance Aggregators: False\n",
|
|
112
|
+
"Instance BinningOutputBands: False\n",
|
|
113
|
+
"Instance BinningVariables: False\n",
|
|
114
|
+
"Instance str: False\n"
|
|
115
|
+
]
|
|
116
|
+
}
|
|
117
|
+
],
|
|
118
|
+
"source": [
|
|
119
|
+
"# Add 'BandMaths' operator to the graph...\n",
|
|
120
|
+
"\n",
|
|
121
|
+
"g.add_node(operator=band_maths, node_id=\"BandMaths\" ,source='Read')"
|
|
122
|
+
]
|
|
123
|
+
},
|
|
124
|
+
{
|
|
125
|
+
"cell_type": "code",
|
|
126
|
+
"execution_count": 7,
|
|
127
|
+
"id": "6558126a-e281-497d-a365-3a6b0497762c",
|
|
128
|
+
"metadata": {},
|
|
129
|
+
"outputs": [
|
|
130
|
+
{
|
|
131
|
+
"data": {
|
|
132
|
+
"text/plain": [
|
|
133
|
+
"Operator('BandMerge', sourceBandNames='None', geographicError='1.0E-5f', source='['Read', 'BandMaths']')"
|
|
134
|
+
]
|
|
135
|
+
},
|
|
136
|
+
"execution_count": 7,
|
|
137
|
+
"metadata": {},
|
|
138
|
+
"output_type": "execute_result"
|
|
139
|
+
}
|
|
140
|
+
],
|
|
141
|
+
"source": [
|
|
142
|
+
"# Set up a 'Merge' operator to merge input with NDVI result...\n",
|
|
143
|
+
"\n",
|
|
144
|
+
"merge = Operator(\"BandMerge\", source=[\"Read\", \"BandMaths\"])\n",
|
|
145
|
+
"\n",
|
|
146
|
+
"merge"
|
|
147
|
+
]
|
|
148
|
+
},
|
|
149
|
+
{
|
|
150
|
+
"cell_type": "code",
|
|
151
|
+
"execution_count": 8,
|
|
152
|
+
"id": "216903df-8ef4-403b-9437-5653733120fb",
|
|
153
|
+
"metadata": {},
|
|
154
|
+
"outputs": [],
|
|
155
|
+
"source": [
|
|
156
|
+
"# Add 'Merge' operator to the graph...\n",
|
|
157
|
+
"\n",
|
|
158
|
+
"g.add_node(operator=merge, node_id=\"Merge\", source=[\"Read\", \"BandMaths\"])"
|
|
159
|
+
]
|
|
160
|
+
},
|
|
161
|
+
{
|
|
162
|
+
"cell_type": "code",
|
|
163
|
+
"execution_count": 9,
|
|
164
|
+
"id": "cc5346c1-d9f6-49b2-8f7a-a59b9104e589",
|
|
165
|
+
"metadata": {},
|
|
166
|
+
"outputs": [
|
|
167
|
+
{
|
|
168
|
+
"data": {
|
|
169
|
+
"text/plain": [
|
|
170
|
+
"Operator('Subset', bandNames='Oa08_radiance,Oa17_radiance,ndvi', tiePointGridNames='None', region='None', referenceBand='None', geoRegion='None', subSamplingX='1', subSamplingY='1', fullSwath='false', copyMetadata='false')"
|
|
171
|
+
]
|
|
172
|
+
},
|
|
173
|
+
"execution_count": 9,
|
|
174
|
+
"metadata": {},
|
|
175
|
+
"output_type": "execute_result"
|
|
176
|
+
}
|
|
177
|
+
],
|
|
178
|
+
"source": [
|
|
179
|
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"# Set up a 'Subset' operator to extract just three bands...\n",
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"\n",
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181
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"subset = Operator('Subset', bandNames=\"Oa08_radiance,Oa17_radiance,ndvi\")\n",
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182
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+
"\n",
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183
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"subset"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 10,
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"id": "5120cf7c-9fd4-4c50-a90c-38800b6ba01d",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Add 'Subset' operator to the graph...\n",
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"\n",
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195
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"g.add_node(operator=subset, node_id=\"Subset\", source='Merge')"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 11,
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"id": "8f90a68b-d124-428e-bdf6-1f3ea070c667",
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"Operator('Write', file='None', formatName='BEAM-DIMAP', deleteOutputOnFailure='true', writeEntireTileRows='false', clearCacheAfterRowWrite='false')"
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]
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},
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210
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"execution_count": 11,
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"metadata": {},
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"output_type": "execute_result"
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+
}
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+
],
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"source": [
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216
|
+
"# Set up a 'Write' operator to write final target product with the three bands...\n",
|
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+
"\n",
|
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218
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+
"write = Operator(\"Write\")\n",
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+
"\n",
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220
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+
"write"
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+
]
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+
},
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{
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"cell_type": "code",
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225
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"execution_count": 12,
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226
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"id": "0548a3a6-cf3c-4f26-a48d-0e92556ee09c",
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"metadata": {},
|
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228
|
+
"outputs": [],
|
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229
|
+
"source": [
|
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230
|
+
"# Add 'Write' operator to the graph. Define a NetCDF output file...\n",
|
|
231
|
+
"\n",
|
|
232
|
+
"g.add_node(operator=Operator(\"Write\", file='./data/snapista_demo_bandmaths_result.nc', formatName='NetCDF4-BEAM'), node_id=\"Write\", source='Subset')"
|
|
233
|
+
]
|
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234
|
+
},
|
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|
+
{
|
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|
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"cell_type": "code",
|
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237
|
+
"execution_count": 13,
|
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|
+
"id": "825327d3-cc7f-4a1d-840d-52d40a39c4fd",
|
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|
+
"metadata": {},
|
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|
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"outputs": [
|
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|
+
{
|
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242
|
+
"name": "stdout",
|
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243
|
+
"output_type": "stream",
|
|
244
|
+
"text": [
|
|
245
|
+
"<graph>\n",
|
|
246
|
+
" <version>1.0</version>\n",
|
|
247
|
+
" <node id=\"Read\">\n",
|
|
248
|
+
" <operator>Read</operator>\n",
|
|
249
|
+
" <sources/>\n",
|
|
250
|
+
" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
|
|
251
|
+
" <bandNames/>\n",
|
|
252
|
+
" <copyMetadata>true</copyMetadata>\n",
|
|
253
|
+
" <file>./data/subset_0_of_S3A_OL_1_ERR____20160701T092853_20160701T093053_20170919T102725_0119_006_036______MR1_R_NT_002.nc</file>\n",
|
|
254
|
+
" <formatName/>\n",
|
|
255
|
+
" <geometryRegion/>\n",
|
|
256
|
+
" <maskNames/>\n",
|
|
257
|
+
" <pixelRegion/>\n",
|
|
258
|
+
" <useAdvancedOptions>false</useAdvancedOptions>\n",
|
|
259
|
+
" </parameters>\n",
|
|
260
|
+
" </node>\n",
|
|
261
|
+
" <node id=\"BandMaths\">\n",
|
|
262
|
+
" <operator>BandMaths</operator>\n",
|
|
263
|
+
" <sources>\n",
|
|
264
|
+
" <sourceProduct refid=\"Read\"/>\n",
|
|
265
|
+
" </sources>\n",
|
|
266
|
+
" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
|
|
267
|
+
" <targetBands>\n",
|
|
268
|
+
" <targetBand>\n",
|
|
269
|
+
" <name>ndvi</name>\n",
|
|
270
|
+
" <expression>(Oa08_radiance - Oa17_radiance)/(Oa08_radiance + Oa17_radiance)</expression>\n",
|
|
271
|
+
" <type>float32</type>\n",
|
|
272
|
+
" <description/>\n",
|
|
273
|
+
" <unit/>\n",
|
|
274
|
+
" <no_data_value>NaN</no_data_value>\n",
|
|
275
|
+
" </targetBand>\n",
|
|
276
|
+
" </targetBands>\n",
|
|
277
|
+
" <variables/>\n",
|
|
278
|
+
" </parameters>\n",
|
|
279
|
+
" </node>\n",
|
|
280
|
+
" <node id=\"Merge\">\n",
|
|
281
|
+
" <operator>BandMerge</operator>\n",
|
|
282
|
+
" <sources>\n",
|
|
283
|
+
" <sourceProduct refid=\"Read\"/>\n",
|
|
284
|
+
" <sourceProduct.1 refid=\"BandMaths\"/>\n",
|
|
285
|
+
" </sources>\n",
|
|
286
|
+
" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
|
|
287
|
+
" <geographicError>1.0E-5f</geographicError>\n",
|
|
288
|
+
" <sourceBandNames/>\n",
|
|
289
|
+
" </parameters>\n",
|
|
290
|
+
" </node>\n",
|
|
291
|
+
" <node id=\"Subset\">\n",
|
|
292
|
+
" <operator>Subset</operator>\n",
|
|
293
|
+
" <sources>\n",
|
|
294
|
+
" <sourceProduct refid=\"Merge\"/>\n",
|
|
295
|
+
" </sources>\n",
|
|
296
|
+
" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
|
|
297
|
+
" <bandNames>Oa08_radiance,Oa17_radiance,ndvi</bandNames>\n",
|
|
298
|
+
" <copyMetadata>false</copyMetadata>\n",
|
|
299
|
+
" <fullSwath>false</fullSwath>\n",
|
|
300
|
+
" <geoRegion/>\n",
|
|
301
|
+
" <referenceBand/>\n",
|
|
302
|
+
" <region/>\n",
|
|
303
|
+
" <subSamplingX>1</subSamplingX>\n",
|
|
304
|
+
" <subSamplingY>1</subSamplingY>\n",
|
|
305
|
+
" <tiePointGridNames/>\n",
|
|
306
|
+
" </parameters>\n",
|
|
307
|
+
" </node>\n",
|
|
308
|
+
" <node id=\"Write\">\n",
|
|
309
|
+
" <operator>Write</operator>\n",
|
|
310
|
+
" <sources>\n",
|
|
311
|
+
" <sourceProduct refid=\"Subset\"/>\n",
|
|
312
|
+
" </sources>\n",
|
|
313
|
+
" <parameters class=\"com.bc.ceres.binding.dom.XppDomElement\">\n",
|
|
314
|
+
" <clearCacheAfterRowWrite>false</clearCacheAfterRowWrite>\n",
|
|
315
|
+
" <deleteOutputOnFailure>true</deleteOutputOnFailure>\n",
|
|
316
|
+
" <file>./data/snapista_demo_bandmaths_result.nc</file>\n",
|
|
317
|
+
" <formatName>NetCDF4-BEAM</formatName>\n",
|
|
318
|
+
" <writeEntireTileRows>false</writeEntireTileRows>\n",
|
|
319
|
+
" </parameters>\n",
|
|
320
|
+
" </node>\n",
|
|
321
|
+
"</graph>\n",
|
|
322
|
+
"\n"
|
|
323
|
+
]
|
|
324
|
+
}
|
|
325
|
+
],
|
|
326
|
+
"source": [
|
|
327
|
+
"# View graph in XML representation...\n",
|
|
328
|
+
"\n",
|
|
329
|
+
"g.view()"
|
|
330
|
+
]
|
|
331
|
+
},
|
|
332
|
+
{
|
|
333
|
+
"cell_type": "code",
|
|
334
|
+
"execution_count": 14,
|
|
335
|
+
"id": "3328eb96-de62-4fbe-9f05-f0266b22b69d",
|
|
336
|
+
"metadata": {},
|
|
337
|
+
"outputs": [
|
|
338
|
+
{
|
|
339
|
+
"name": "stdout",
|
|
340
|
+
"output_type": "stream",
|
|
341
|
+
"text": [
|
|
342
|
+
"Processing the graph, this may take a while. Please wait...\n",
|
|
343
|
+
"Executing processing graph\n",
|
|
344
|
+
"15%30%45%60%...70%..90% done.\n",
|
|
345
|
+
"SEVERE: org.esa.snap.runtime.Engine: Failed to modify class loader field 'usr_paths'\n",
|
|
346
|
+
"java.lang.NoSuchMethodException: java.lang.ClassLoader.initializePath(java.lang.String)\n",
|
|
347
|
+
"\tat java.base/java.lang.Class.getDeclaredMethod(Class.java:2848)\n",
|
|
348
|
+
"\tat org.esa.snap.runtime.Engine.setJavaLibraryPath(Engine.java:286)\n",
|
|
349
|
+
"\tat org.esa.snap.runtime.Engine.setJavaLibraryPath(Engine.java:265)\n",
|
|
350
|
+
"\tat org.esa.snap.runtime.Engine.<init>(Engine.java:46)\n",
|
|
351
|
+
"\tat org.esa.snap.runtime.Engine.start(Engine.java:117)\n",
|
|
352
|
+
"\tat org.esa.snap.runtime.Engine.start(Engine.java:90)\n",
|
|
353
|
+
"\tat org.esa.snap.runtime.Launcher.run(Launcher.java:51)\n",
|
|
354
|
+
"\tat org.esa.snap.runtime.Launcher.main(Launcher.java:31)\n",
|
|
355
|
+
"\tat java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\n",
|
|
356
|
+
"\tat java.base/java.lang.reflect.Method.invoke(Method.java:580)\n",
|
|
357
|
+
"\tat com.exe4j.runtime.LauncherEngine.launch(LauncherEngine.java:84)\n",
|
|
358
|
+
"\tat com.exe4j.runtime.WinLauncher.main(WinLauncher.java:94)\n",
|
|
359
|
+
"\tat com.install4j.runtime.launcher.WinLauncher.main(WinLauncher.java:25)\n",
|
|
360
|
+
"\n",
|
|
361
|
+
"INFO: org.esa.snap.core.gpf.operators.tooladapter.ToolAdapterIO: Initializing external tool adapters\n",
|
|
362
|
+
"INFO: org.esa.snap.core.util.EngineVersionCheckActivator: Please check regularly for new updates for the best SNAP experience.\n",
|
|
363
|
+
"WARNING: org.esa.snap.dataio.netcdf.util.MetadataUtils: Missing configuration property 'snap.dataio.netcdf.metadataElementLimit'. Using default (100).\n",
|
|
364
|
+
"4280 [main] INFO serverStartup - Nc4Iosp: NetCDF-4 C library loaded (jna_path='C:\\Users\\olafd\\.snap\\auxdata\\netcdf_natives\\12.0.0.0\\amd64', libname='netcdf').\n",
|
|
365
|
+
"4287 [main] INFO serverStartup - NetcdfLoader: set log level: old=0 new=0\n",
|
|
366
|
+
"4287 [main] INFO serverStartup - Nc4Iosp: set log level: old=0 new=0\n",
|
|
367
|
+
"Processing finished successfully.\n"
|
|
368
|
+
]
|
|
369
|
+
},
|
|
370
|
+
{
|
|
371
|
+
"data": {
|
|
372
|
+
"text/plain": [
|
|
373
|
+
"0"
|
|
374
|
+
]
|
|
375
|
+
},
|
|
376
|
+
"execution_count": 14,
|
|
377
|
+
"metadata": {},
|
|
378
|
+
"output_type": "execute_result"
|
|
379
|
+
}
|
|
380
|
+
],
|
|
381
|
+
"source": [
|
|
382
|
+
"# Save graph as XML file, then run it...\n",
|
|
383
|
+
"\n",
|
|
384
|
+
"g.save_graph('./data/snapista_demo_bandmaths.xml')\n",
|
|
385
|
+
"g.run()"
|
|
386
|
+
]
|
|
387
|
+
},
|
|
388
|
+
{
|
|
389
|
+
"cell_type": "code",
|
|
390
|
+
"execution_count": null,
|
|
391
|
+
"id": "eaef2574-6a7d-484b-86f9-69f8f4b531e3",
|
|
392
|
+
"metadata": {},
|
|
393
|
+
"outputs": [],
|
|
394
|
+
"source": []
|
|
395
|
+
}
|
|
396
|
+
],
|
|
397
|
+
"metadata": {
|
|
398
|
+
"kernelspec": {
|
|
399
|
+
"display_name": "Python 3 (ipykernel)",
|
|
400
|
+
"language": "python",
|
|
401
|
+
"name": "python3"
|
|
402
|
+
},
|
|
403
|
+
"language_info": {
|
|
404
|
+
"codemirror_mode": {
|
|
405
|
+
"name": "ipython",
|
|
406
|
+
"version": 3
|
|
407
|
+
},
|
|
408
|
+
"file_extension": ".py",
|
|
409
|
+
"mimetype": "text/x-python",
|
|
410
|
+
"name": "python",
|
|
411
|
+
"nbconvert_exporter": "python",
|
|
412
|
+
"pygments_lexer": "ipython3",
|
|
413
|
+
"version": "3.11.9"
|
|
414
|
+
}
|
|
415
|
+
},
|
|
416
|
+
"nbformat": 4,
|
|
417
|
+
"nbformat_minor": 5
|
|
418
|
+
}
|