ert 20.0.0b0__py3-none-any.whl → 20.0.0b1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ert/cli/main.py +1 -2
- ert/config/_create_observation_dataframes.py +1 -0
- ert/config/_observations.py +44 -0
- ert/config/ert_config.py +5 -62
- ert/config/everest_response.py +2 -2
- ert/config/field.py +4 -4
- ert/config/rft_config.py +101 -28
- ert/dark_storage/endpoints/experiment_server.py +3 -5
- ert/ensemble_evaluator/config.py +1 -2
- ert/gui/simulation/experiment_panel.py +2 -9
- ert/gui/tools/manage_experiments/storage_widget.py +20 -18
- ert/plugins/plugin_manager.py +0 -4
- ert/run_models/ensemble_experiment.py +2 -7
- ert/run_models/ensemble_smoother.py +1 -7
- ert/run_models/everest_run_model.py +19 -10
- ert/run_models/manual_update.py +11 -5
- ert/run_models/multiple_data_assimilation.py +3 -14
- ert/scheduler/job.py +24 -4
- ert/shared/net_utils.py +18 -43
- ert/shared/version.py +3 -3
- ert/storage/local_ensemble.py +4 -1
- ert/storage/local_experiment.py +96 -95
- ert/storage/local_storage.py +10 -12
- ert/storage/migration/to24.py +26 -0
- ert/storage/migration/to25.py +91 -0
- {ert-20.0.0b0.dist-info → ert-20.0.0b1.dist-info}/METADATA +1 -1
- {ert-20.0.0b0.dist-info → ert-20.0.0b1.dist-info}/RECORD +31 -29
- {ert-20.0.0b0.dist-info → ert-20.0.0b1.dist-info}/WHEEL +0 -0
- {ert-20.0.0b0.dist-info → ert-20.0.0b1.dist-info}/entry_points.txt +0 -0
- {ert-20.0.0b0.dist-info → ert-20.0.0b1.dist-info}/licenses/COPYING +0 -0
- {ert-20.0.0b0.dist-info → ert-20.0.0b1.dist-info}/top_level.txt +0 -0
ert/storage/local_storage.py
CHANGED
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@@ -21,7 +21,7 @@ from filelock import FileLock, Timeout
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from pydantic import BaseModel, Field
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import ert.storage
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from ert.config import ErtConfig
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from ert.config import ErtConfig
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from ert.shared import __version__
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from .local_ensemble import LocalEnsemble
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@@ -31,7 +31,7 @@ from .realization_storage_state import RealizationStorageState
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logger = logging.getLogger(__name__)
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_LOCAL_STORAGE_VERSION =
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_LOCAL_STORAGE_VERSION = 25
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class _Migrations(BaseModel):
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@@ -322,12 +322,8 @@ class LocalStorage(BaseMode):
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@require_write
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def create_experiment(
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self,
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responses: list[ResponseConfig] | None = None,
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observations: dict[str, pl.DataFrame] | None = None,
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simulation_arguments: dict[Any, Any] | None = None,
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experiment_config: dict[str, Any] | None = None,
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name: str | None = None,
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templates: list[tuple[str, str]] | None = None,
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) -> LocalExperiment:
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"""
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Creates a new experiment in the storage.
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@@ -352,6 +348,8 @@ class LocalStorage(BaseMode):
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local_experiment : LocalExperiment
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The newly created experiment.
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"""
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if experiment_config is None:
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experiment_config = {}
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exp_id = uuid4()
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path = self._experiment_path(exp_id)
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@@ -361,12 +359,8 @@ class LocalStorage(BaseMode):
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self,
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exp_id,
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path,
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responses=responses,
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observations=observations,
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simulation_arguments=simulation_arguments,
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experiment_config=experiment_config,
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name=name,
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templates=templates,
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)
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self._experiments[exp.id] = exp
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@@ -519,6 +513,8 @@ class LocalStorage(BaseMode):
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to21,
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to22,
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to23,
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to24,
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to25,
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)
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try:
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@@ -571,6 +567,8 @@ class LocalStorage(BaseMode):
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}
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for from_version in range(version, _LOCAL_STORAGE_VERSION):
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migrations[from_version].migrate(self.path)
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@@ -0,0 +1,26 @@
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from pathlib import Path
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import polars as pl
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info = "Add default None values to RFT observations and responses"
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def migrate(path: Path) -> None:
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for rft_obs in path.glob("experiments/*/observations/rft"):
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rft_obs_df = pl.read_parquet(rft_obs)
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if "zone" not in rft_obs_df.columns:
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rft_obs_df = rft_obs_df.with_columns(
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pl.lit(None, dtype=pl.String).alias("zone")
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)
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rft_obs_df.write_parquet(rft_obs)
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for rft_response in path.glob("ensembles/*/*/rft.parquet"):
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rft_response_df = pl.read_parquet(rft_response)
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if "zone" not in rft_response_df.columns:
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rft_response_df = rft_response_df.with_columns(
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pl.lit(None, dtype=pl.String).alias("zone")
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)
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rft_response_df.write_parquet(rft_response)
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@@ -0,0 +1,91 @@
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import datetime
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import json
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import shutil
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from pathlib import Path
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from typing import Any, cast
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import polars as pl
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info = (
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"Move parameters.json, responses.json, observations contents to be in "
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"experiment index.json .experiment field"
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)
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def _observation_row_to_declaration(
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row: dict[str, Any], response_type: str
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) -> dict[str, Any]:
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observation, error = row.get("observations"), row.get("std")
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decl = {
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"name": row.get("observation_key"),
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"value": float(observation) if observation is not None else None,
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"error": float(error) if error is not None else None,
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}
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if response_type == "summary":
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date_str = cast(datetime.datetime, row.get("time")).date().isoformat()
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decl.update(
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{
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"type": "summary_observation",
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"key": row.get("response_key"),
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"date": date_str,
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}
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)
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if row.get("east") is not None or row.get("north") is not None:
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for f in ["east", "north", "radius"]:
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if (val := row.get(f)) is not None:
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decl[f] = float(val)
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elif response_type == "gen_data":
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decl.update(
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{
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"type": "general_observation",
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"data": row.get("response_key"),
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"restart": int(row.get("report_step") or 0),
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"index": int(row.get("index") or 0),
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}
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)
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return decl
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def migrate_parameters_responses_and_observations_into_experiment_index(
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path: Path,
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) -> None:
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for exp_path in path.glob("experiments/*"):
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if not exp_path.is_dir():
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continue
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meta = json.loads((exp_path / "metadata.json").read_text(encoding="utf-8"))
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resps = json.loads((exp_path / "responses.json").read_text(encoding="utf-8"))
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params = json.loads((exp_path / "parameter.json").read_text(encoding="utf-8"))
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experiment_json = {
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"response_configuration": list(resps.values()),
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"parameter_configuration": list(params.values()),
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"observations": [],
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}
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if "weights" in meta:
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experiment_json["weights"] = meta["weights"]
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obs_dir = exp_path / "observations"
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if obs_dir.exists():
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for obs_file in obs_dir.glob("*"):
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df = pl.read_parquet(obs_file)
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experiment_json["observations"].extend(
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[
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_observation_row_to_declaration(row, obs_file.stem)
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for row in df.to_dicts()
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]
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)
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index_file = exp_path / "index.json"
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index = json.loads(index_file.read_text(encoding="utf-8"))
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index["experiment"] = experiment_json
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index_file.write_text(json.dumps(index, indent=2), encoding="utf-8")
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for f in ["metadata.json", "responses.json", "parameter.json"]:
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(exp_path / f).unlink()
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if obs_dir.exists():
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shutil.rmtree(obs_dir)
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def migrate(path: Path) -> None:
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migrate_parameters_responses_and_observations_into_experiment_index(path)
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@@ -38,14 +38,14 @@ ert/analysis/event.py,sha256=vBYqtTl5DXePPWHTLX9bROmGTD2ixcrQh4K07g-UikM,2248
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ert/analysis/misfit_preprocessor.py,sha256=2MjlL2yIg5KQpqWiD3675-hoy_5QM49pWQ7VXK4rous,8001
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ert/analysis/snapshots.py,sha256=rLMxg4y5dlA_GZ2ETnZilfmggsqDm3O8Fiuq2xpshz8,2106
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ert/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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ert/cli/main.py,sha256=
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ert/cli/main.py,sha256=gOH_jBc_Xu_UyqZ4_wgfxJjWgNPk-zwLdW7yya0Leog,6499
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ert/cli/monitor.py,sha256=ad6aT1Ch-To5XpQR6eR1SMCBZ9HNRjPE9X8o6TEGURg,5973
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ert/cli/workflow.py,sha256=QKbpHr_Tc5NQjSNL1tB4uCo9ykTkqvwohywbjGAm-r4,1260
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ert/config/__init__.py,sha256=smcJLPZkJApPQhir-TL9qc0MU-7ChR4gPhPMHMwy4CU,4326
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ert/config/_create_observation_dataframes.py,sha256=
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ert/config/_create_observation_dataframes.py,sha256=9bcoYjlKp1u98_PPjTBKI0Gnx7im4xBVUP_i6OwS3LU,7569
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ert/config/_design_matrix_validator.py,sha256=_eEk07L4c7sv8WwTYYGHc_rT1HEOZDqLrgla0r9rpj0,1308
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ert/config/_get_num_cpu.py,sha256=IXOEHkGJEz7kEOysc29q-jpaXqbWeu-Y4FlQvGp0ryM,7684
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ert/config/_observations.py,sha256=
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ert/config/_observations.py,sha256=WwxX8GEpJgTLSuNwg_iTOib2CZEVM1sOh1t5Q9bLE_8,27556
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ert/config/_read_summary.py,sha256=4gA2qyofCNQGyOPIDHfOrBUadrmIKimZ9MK2W20ynko,7590
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ert/config/_str_to_bool.py,sha256=AxNCJAuTtKF-562CRh7HgjQIyM7N-jjSlRJKvpCNk9I,852
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ert/config/analysis_config.py,sha256=v-ZppIlP_NkmhtuYuxm31m2V3eA7YjvC3rDsMXm5qPk,8646
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@@ -54,13 +54,13 @@ ert/config/capture_validation.py,sha256=8HGEbJ2z9FXeEaxSewejP7NtEh4LLomPwcdpC0CJ
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ert/config/design_matrix.py,sha256=yyAFBppTwZXt4OeN6kxRmLk16jF8bntQWLHU_-rDQn4,17236
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ert/config/distribution.py,sha256=rzpO-U8c2ptsj1KlfUw6n_CRaj-e1cvzVvasR0t5sZI,12728
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ert/config/ensemble_config.py,sha256=b0KuQ_y85kr4AOPPX_qieYKgnDGZ4_87bSjYpVZuOlM,7322
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ert/config/ert_config.py,sha256=
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ert/config/ert_config.py,sha256=vSz6aTdGYrSRl4Cs10XlUVYEIDy46iZMg_5To3RYtHA,54422
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ert/config/ert_plugin.py,sha256=hENwrc9FfhqUYjVpFYcmy66jDLgU_gagOJFBcYjxe6A,458
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ert/config/ert_script.py,sha256=64FZ-dMI8DZtRLHWReC19KY-ZOsBhdgYkwAe9ZWLc_I,8405
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ert/config/everest_control.py,sha256=7V0he43FTqsq8kAXlvn_mUkux1tG1NS3X14E8fuaY48,8121
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ert/config/everest_response.py,sha256=
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ert/config/everest_response.py,sha256=9Ui2MW9IIwfIY_xAcQs1tZIxPqJVvVnanIJidQlh2hw,3106
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ert/config/external_ert_script.py,sha256=7htQDv1P7ykoj4Bz51xOWIDbs7P4z7HIft67Baba71Q,1169
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ert/config/field.py,sha256=
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ert/config/field.py,sha256=hjId8oxlrabxetLTbfGzPFpln3qMNBkKhIhxdtVTTGA,11842
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ert/config/forward_model_step.py,sha256=YZqmlqQrP-7swViW3i_3c9SqhjMelx0HUxu1BTnFWXs,13881
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ert/config/gen_data_config.py,sha256=IW80OhGTOYjZEiI_272Kd6AVSa3iLmZ938wY8E1vTI0,8341
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ert/config/gen_kw_config.py,sha256=_fboMvCjtk5CChSl-4A5LN3YNII5y9jiK1YLSHj_48M,10010
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@@ -74,7 +74,7 @@ ert/config/queue_config.py,sha256=PF0TNcdzoWVLWU0Nwd5lV3RipS9bUAZxwmDyqEgJGBg,19
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ert/config/refcase.py,sha256=hTTJ87wYTVqlwkIf1vyjxnnvIiZ-msDfhT-_OxE-yjE,1555
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ert/config/response_config.py,sha256=6HhchocCZPCQtzFT0wEexkhoe3bperzutA4d6aPLVYc,1837
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ert/config/responses_index.py,sha256=ewBOFRkus6LMg3GYao53KI4-6T2Gr6IJ1OhWOaiRP_c,1437
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ert/config/rft_config.py,sha256=
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ert/config/rft_config.py,sha256=qtY4j-cTqv4HIDwrjApD13Paq7qEIZpAyuafM-qYa5Y,14355
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ert/config/summary_config.py,sha256=Pac5-FHW00nRkZeaUHKclkcfDeJAvv9w-ADLIIn4sRU,3617
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ert/config/surface_config.py,sha256=Rgbfx52ylPbgBKCUqyZC0xfeKCTA5ssvbnm0Wt24TcM,8087
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ert/config/workflow.py,sha256=WqEzT5YtXj0v6Quzqn0VP7fKTPUSpAgnKtgxoE8hL24,3569
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@@ -121,7 +121,7 @@ ert/dark_storage/client/client.py,sha256=Ia4r5-NrJx0fRdaJNNe7UVlDjW_C33DjPpnSBxP
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@@ -323,7 +323,7 @@ ert/logging/__init__.py,sha256=UfFNC5DUGRT81KyydbaZhh6QfvdOSdcekaH0tsaB6r8,3084
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@@ -409,9 +409,9 @@ ert/shared/storage/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuF
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ert/storage/__init__.py,sha256=f4uzzomaB1TpFpzGMF2Jd_PV54lq4EfkiZzQApDBuPQ,2110
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ert/storage/load_status.py,sha256=7h_GdA2qYGgQ-M5AOIo7xG43ljwzEEgbRb7vg0xSYEE,304
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ert/storage/local_experiment.py,sha256=MHU_JDwAk8jrug4jhtQ8w35iCUHrdqyJPBaorGG-tBY,16499
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ert/storage/local_storage.py,sha256=TG4q2xVWBtQVBPxNEVAMp09MyB7Hia1bCMNDq-KE7R4,23865
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ert/storage/migration/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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@@ -429,6 +429,8 @@ ert/storage/migration/to20.py,sha256=DZ79hfJxdbaewP4W8TyRdsQvi-FkeSco_0uZKBdyD_4
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ert/storage/migration/to24.py,sha256=eN9UZaLqAy_4WnG1tZ3qZ-0vt6rwspWPI8LmuGrF-P0,830
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ert/storage/migration/to25.py,sha256=Bjy90WFUKeoDdN1TzH6AAPXd8kXe83RQ0ZhmkDCOhMo,3135
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ert-20.0.
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ert-20.0.0b1.dist-info/licenses/COPYING,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
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everest/__init__.py,sha256=8_f50f6H3-onqaiuNCwC0Eiotdl9JuTxhwyF_54MVvU,306
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everest/config_file_loader.py,sha256=rOHYvB4ayB2MaKdaAynvJVtbCOqi_z25EdwEqJ02-DQ,5675
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everest/everest_storage.py,sha256=c3sgU7-3BDSRXxJfCR_4F58rWEaoII1wygz6VvM-GGI,42025
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ert-20.0.0b1.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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ert-20.0.0b1.dist-info/entry_points.txt,sha256=ChZ7vn8Qy9v9rT8GM2JtAvWDN3NVoy4BIcvVRtU73CM,189
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ert-20.0.0b1.dist-info/top_level.txt,sha256=LRh9GfdfyDWfAGmrQgp_XdoMHA4v6aotw8xgsy5YyHE,17
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