ephys-link 2.0.0b9__py3-none-any.whl → 2.0.1__py3-none-any.whl

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Files changed (8) hide show
  1. ephys_link/__about__.py +1 -1
  2. ephys_link/bindings/mpm_binding.py +2 -2
  3. ephys_link/bindings/ump_4_binding.py +1 -1
  4. {ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/METADATA +19 -21
  5. {ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/RECORD +8 -8
  6. {ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/WHEEL +0 -0
  7. {ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/entry_points.txt +0 -0
  8. {ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/licenses/LICENSE +0 -0
ephys_link/__about__.py CHANGED
@@ -1 +1 @@
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- __version__ = "2.0.0b9"
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+ __version__ = "2.0.1"
ephys_link/bindings/mpm_binding.py CHANGED
@@ -127,7 +127,7 @@ class MPMBinding(BaseBinding):
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  manipulator_data: dict[str, float] = await self._manipulator_data(manipulator_id)
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  # Apply PosteriorAngle to Polar to get the correct angle.
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- adjusted_polar: int = manipulator_data["Polar"] - (await self._query_data())["PosteriorAngle"]
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+ adjusted_polar: int = manipulator_data["Polar"] - (await self._query_data())["PosteriorAngle"] # pyright: ignore [reportAny]
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  return Vector3(
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  x=adjusted_polar if adjusted_polar > 0 else 360 + adjusted_polar,
@@ -299,7 +299,7 @@ class MPMBinding(BaseBinding):
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  return self.cache
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  async def _manipulator_data(self, manipulator_id: str) -> dict[str, Any]: # pyright: ignore [reportExplicitAny]
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- probe_data: list[dict[str, Any]] = (await self._query_data())["ProbeArray"] # pyright: ignore [reportExplicitAny]
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+ probe_data: list[dict[str, Any]] = (await self._query_data())["ProbeArray"] # pyright: ignore [reportExplicitAny, reportAny]
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  for probe in probe_data:
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  if probe["Id"] == manipulator_id:
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  return probe
ephys_link/bindings/ump_4_binding.py CHANGED
@@ -100,7 +100,7 @@ class Ump4Binding(BaseBinding):
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  raise RuntimeError(error_message)
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  # Handle empty end position.
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- if not movement.last_pos: # pyright: ignore [reportUnknownMemberType]
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+ if movement.last_pos is None or len(movement.last_pos) == 0: # pyright: ignore [reportUnknownMemberType, reportUnknownArgumentType]
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  error_message = f"Manipulator {manipulator_id} did not reach target position"
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  raise RuntimeError(error_message)
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{ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: ephys-link
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- Version: 2.0.0b9
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+ Version: 2.0.1
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  Summary: A Python Socket.IO server that allows any Socket.IO-compliant application to communicate with manipulators used in electrophysiology experiments.
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  Project-URL: Documentation, https://virtualbrainlab.org/ephys_link/installation_and_use.html
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  Project-URL: Issues, https://github.com/VirtualBrainLab/ephys-link/issues
@@ -17,34 +17,31 @@ Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
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  Classifier: Operating System :: Microsoft :: Windows
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  Classifier: Programming Language :: Python
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  Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.10
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- Classifier: Programming Language :: Python :: 3.11
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- Classifier: Programming Language :: Python :: 3.12
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  Classifier: Programming Language :: Python :: 3.13
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  Classifier: Programming Language :: Python :: Implementation :: CPython
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  Classifier: Programming Language :: Python :: Implementation :: PyPy
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  Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
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- Requires-Python: <3.14,>=3.10
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- Requires-Dist: aiohttp==3.11.11
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+ Requires-Python: >=3.13
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+ Requires-Dist: aiohttp==3.11.16
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  Requires-Dist: colorama==0.4.6
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  Requires-Dist: keyboard==0.13.5
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  Requires-Dist: packaging==24.2
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- Requires-Dist: platformdirs==4.3.6
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+ Requires-Dist: platformdirs==4.3.7
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  Requires-Dist: pyserial==3.5
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  Requires-Dist: python-socketio[asyncio-client]==5.12.1
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  Requires-Dist: requests==2.32.3
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- Requires-Dist: rich==13.9.4
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+ Requires-Dist: rich==14.0.0
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  Requires-Dist: sensapex==1.400.3
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- Requires-Dist: vbl-aquarium==1.0.0b3
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+ Requires-Dist: vbl-aquarium==1.0.0
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  Description-Content-Type: text/markdown
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  # Electrophysiology Manipulator Link
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  [![PyPI version](https://badge.fury.io/py/ephys-link.svg)](https://badge.fury.io/py/ephys-link)
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- [![Deploy Documentation](https://github.com/VirtualBrainLab/ephys-link/actions/workflows/deploy-docs.yml/badge.svg)](https://github.com/VirtualBrainLab/ephys-link/actions/workflows/deploy-docs.yml)
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- [![Pydantic v2](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/pydantic/pydantic/main/docs/badge/v2.json)](https://pydantic.dev)
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  [![Hatch project](https://img.shields.io/badge/%F0%9F%A5%9A-Hatch-4051b5.svg)](https://github.com/pypa/hatch)
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+ [![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv)
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  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
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+ [![Pydantic v2](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/pydantic/pydantic/main/docs/badge/v2.json)](https://pydantic.dev)
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  [![Checked with pyright](https://microsoft.github.io/pyright/img/pyright_badge.svg)](https://microsoft.github.io/pyright/)
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  <!-- [![Build](https://github.com/VirtualBrainLab/ephys-link/actions/workflows/build.yml/badge.svg)](https://github.com/VirtualBrainLab/ephys-link/actions/workflows/build.yml) -->
@@ -59,22 +56,23 @@ to communicate with manipulators used in electrophysiology experiments.
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  # Installation
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- ## Launch from Pinpoint (Recommended)
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+ ## Pinpoint (Recommended)
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  Pinpoint comes bundled with the correct version of Ephys Link. If you are using Pinpoint on the same computer your
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- manipulators are connected to, you can launch the server from within Pinpoint. Follow the instructions in
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- the [Pinpoint documentation](https://virtualbrainlab.org/pinpoint/tutorials/tutorial_ephys_link.html#configure-and-launch-ephys-link).
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+ manipulators are connected to, you can launch the server from within Pinpoint. See the documentation
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+ on [connecting from Pinpoint](../usage/using_ephys_link.md#connecting-to-pinpoint).
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+
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+ ## Install as a Standalone Executable
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- ## Install as Standalone Executable
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+ Download the latest standalone executable or zip from
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+ the [releases page](https://github.com/VirtualBrainLab/ephys-link/releases/latest).
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- 1. Download the latest standalone executable or zip from
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- the [releases page](https://github.com/VirtualBrainLab/ephys-link/releases/latest).
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- 2. Double-click the executable file to start.
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+ Then see the [usage documentation](../usage/starting_ephys_link.md) for how to run the server.
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  # Documentation and More Information
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- Complete documentation including API usage and development installation can be
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- found on the [Virtual Brain Lab Documentation page][docs] for Ephys Link.
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+ Complete documentation including how to add manipulators and API usage can be
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+ found on [Ephys Link's Documentation Website][docs].
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  # Citing
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@@ -88,4 +86,4 @@ through the issues tab.
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  [Pinpoint]: https://github.com/VirtualBrainLab/Pinpoint
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- [docs]: https://virtualbrainlab.github.io/ephys-link/
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+ [docs]: https://ephys-link.virtualbrainlab.org
{ephys_link-2.0.0b9.dist-info → ephys_link-2.0.1.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
1
- ephys_link/__about__.py,sha256=fcPPQ4XJ4PzvYjX6RTK2dC_L1a9gTZZrtLk8mryO2C0,24
1
+ ephys_link/__about__.py,sha256=wAxkK8w13vqoF47A8iqWdSlIgRRXmZiQ0R4wePZfzhs,22
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  ephys_link/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  ephys_link/__main__.py,sha256=sbFdC6KJjTfXDgRraU_fmGRPcF4I1Ur9PRDiD86dkRI,1449
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  ephys_link/back_end/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -6,8 +6,8 @@ ephys_link/back_end/platform_handler.py,sha256=PSlBa2_jM073uaF3MvCd-_a7XXEeTfn5K
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  ephys_link/back_end/server.py,sha256=mb3K3pXSO-gHaSj1CGJ0v3CSOW5YCi-p0EOKoySRzKQ,10322
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  ephys_link/bindings/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  ephys_link/bindings/fake_binding.py,sha256=VCmKZha113kiHSmOZzKLfbaa8iXobefJFQPI3eCzuZE,2343
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- ephys_link/bindings/mpm_binding.py,sha256=UdrWXiz16zJ7PSQBnYNtpTXs_1chbE_v1tvzeP7PrPk,10681
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- ephys_link/bindings/ump_4_binding.py,sha256=_ZEMT6B4aEqJHdwSElnkOnaXxG7wwKeUgsHZ5T6ekgg,5345
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+ ephys_link/bindings/mpm_binding.py,sha256=5xYhZbDPNZNrhlizdi5OuVJ5bQkfp4kB-1ONBww_N_Y,10723
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+ ephys_link/bindings/ump_4_binding.py,sha256=zwAUo2wYBGq3NKa0zxdb5Jh_FMBAhf5yHdfKBP3m4dk,5407
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  ephys_link/front_end/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  ephys_link/front_end/cli.py,sha256=isIJs_sZbz7VbNvLgi-HyDlE-TyKD12auDhMTxAkWQU,3099
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  ephys_link/front_end/gui.py,sha256=MDcrTS_Xz9bopAgamh4HknqRC10W8E6eOS3Kss_2ZKQ,6864
@@ -18,8 +18,8 @@ ephys_link/utils/console.py,sha256=52SYvXv_7Fx8QDL3RMFQoggQ1n5W93Yu5aU7uuJQgfg,3
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  ephys_link/utils/constants.py,sha256=1aML7zBNTM5onVSf6NDrYIR33VJy-dIHd1lFORVBGbM,725
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  ephys_link/utils/converters.py,sha256=ZdVmIX-LHCwM__F0SpjN_mfNGGetr1U97xvHd0hf8T0,2038
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  ephys_link/utils/startup.py,sha256=jZVed78tuWjUuZqWVgii_zumDr87T-ikEtOFa6KTE_E,2500
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- ephys_link-2.0.0b9.dist-info/METADATA,sha256=IGGp1Wq6pI7YrTJKx71biBGNTrSaf8Vsk1Lg6p_647Y,4868
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- ephys_link-2.0.0b9.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- ephys_link-2.0.0b9.dist-info/entry_points.txt,sha256=o8wV3AdnJ9o47vg9ymKxPNVq9pMdPq8UZHE_iyAJx-k,124
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- ephys_link-2.0.0b9.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- ephys_link-2.0.0b9.dist-info/RECORD,,
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+ ephys_link-2.0.1.dist-info/METADATA,sha256=3HXNRu1dIUb1BieBaUJtwm_f_yoqjQcI5fqi3N84rkY,4607
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+ ephys_link-2.0.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ ephys_link-2.0.1.dist-info/entry_points.txt,sha256=o8wV3AdnJ9o47vg9ymKxPNVq9pMdPq8UZHE_iyAJx-k,124
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+ ephys_link-2.0.1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ ephys_link-2.0.1.dist-info/RECORD,,