eotdl 2024.4.25__py3-none-any.whl → 2024.6.13__py3-none-any.whl

eotdl/__init__.py

@@ -1 +1 @@
-__version__ = "2024.04.25"
+__version__ = "2024.06.13"

eotdl/access/download.py

@@ -3,7 +3,7 @@ Download imagery
 """
 
 from datetime import datetime
-from typing import Union, List
+from typing import Union, List, Optional
 
 from .sentinelhub import (
     SHClient,
@@ -19,6 +19,7 @@ def download_sentinel_imagery(
     time_interval: Union[str, datetime, List[Union[str, datetime]]],
     bounding_box: List[Union[int, float]],
     sensor: str,
+    name: Optional[str] = None,
 ) -> None:
     """
     Download Sentinel imagery
@@ -28,9 +29,21 @@ def download_sentinel_imagery(
     client = SHClient()
     parameters = SH_PARAMETERS_DICT[sensor]()
 
-    request = client.request_data(time_interval, bounding_box, parameters)
-    client.download_data(request)
-    imagery_from_tmp_to_dir(output)
+    results = search_sentinel_imagery(time_interval, bounding_box, sensor)
+    timestamps = [date.strftime("%Y-%m-%d") for date in results.get_timestamps()]
+
+    requests_list = []
+    for date in timestamps:
+        requests_list.append(client.request_data(date, bounding_box, parameters))
+    if len(requests_list) == 0:
+        print(f"No images found for {sensor} in the specified time: {time_interval}")
+        return
+    elif len(requests_list) <= 2:
+        bulk = False
+    else:
+        bulk = True
+    client.download_data(requests_list)
+    imagery_from_tmp_to_dir(output, name=name, bulk=bulk)
 
 
 def search_and_download_sentinel_imagery(
@@ -42,16 +55,9 @@ def search_and_download_sentinel_imagery(
     """
     Search and download Sentinel imagery
     """
-    evaluate_sentinel_parameters(sensor, time_interval, bounding_box, output)
-
-    client = SHClient()
-    parameters = SH_PARAMETERS_DICT[sensor]()
-
-    results = search_sentinel_imagery(time_interval, bounding_box, sensor)
-    timestamps = [date.strftime("%Y-%m-%d") for date in results.get_timestamps()]
+    from warnings import warn
 
-    requests_list = []
-    for date in timestamps:
-        requests_list.append(client.request_data(date, bounding_box, parameters))
-    client.download_data(requests_list)
-    imagery_from_tmp_to_dir(output)
+    warn(
+        "The function `search_and_download_sentinel_imagery` has been deprecated and will be removed in future updates. Please use download_satellite_imagery instead."
+    )
+    download_sentinel_imagery(output, time_interval, bounding_box, sensor)

eotdl/access/sentinelhub/utils.py

@@ -49,7 +49,10 @@ def evaluate_sentinel_parameters(
 
 
 def imagery_from_tmp_to_dir(
-    output_dir: str, tmp_dir: Optional[str] = "/tmp/sentinelhub"
+    output_dir: str,
+    tmp_dir: Optional[str] = "/tmp/sentinelhub",
+    name: Optional[str] = None,
+    bulk: Optional[bool] = False,
 ) -> None:
     """
     Copy imagery from tmp to output dir
@@ -63,10 +66,15 @@ def imagery_from_tmp_to_dir(
     for downloaded_file in downloaded_files:
         request_json = downloaded_file.replace("response.tiff", "request.json")
         metadata = generate_raster_metadata(downloaded_file, request_json)
-        if metadata["acquisition-date"]:
-            output_filename = f"{metadata['type']}_{metadata['acquisition-date']}"
+        if name and not bulk:
+            output_filename = name
+        elif name and bulk:
+            output_filename = f"{name}_{metadata['acquisition-date']}"
         else:
-            output_filename = metadata["type"]
+            if metadata["acquisition-date"]:
+                output_filename = f"{metadata['type']}_{metadata['acquisition-date']}"
+            else:
+                output_filename = metadata["type"]
 
         copyfile(downloaded_file, f"{output_dir}/{output_filename}.tif")
         with open(f"{output_dir}/{output_filename}.json", "w", encoding="utf-8") as f:

eotdl/datasets/__init__.py

@@ -1,3 +1,3 @@
-from .retrieve import retrieve_datasets  # , retrieve_dataset, list_datasets
+from .retrieve import retrieve_datasets, retrieve_dataset, retrieve_dataset_files
 from .ingest import ingest_dataset
 from .download import download_dataset, download_file_url

eotdl/files/__init__.py

@@ -1 +1,2 @@
 from .ingest import ingest_files, create_new_version
+from .list_files import list_files

eotdl/files/list_files.py

@@ -0,0 +1,13 @@
+from ..datasets import retrieve_dataset, retrieve_dataset_files
+from ..models import retrieve_model, retrieve_model_files
+
+def list_files(dataset_or_model_name, version=1):
+	try:
+		dataset = retrieve_dataset(dataset_or_model_name)
+		return retrieve_dataset_files(dataset['id'], version)
+	except Exception as e:
+		try:
+			model = retrieve_model(dataset_or_model_name)
+			return retrieve_model_files(model['id'], version)
+		except Exception as e:
+			raise Exception(f"Dataset or model {dataset_or_model_name} not found.")

eotdl/models/__init__.py

@@ -1,3 +1,3 @@
-from .retrieve import retrieve_models
+from .retrieve import retrieve_models, retrieve_model, retrieve_model_files
 from .ingest import ingest_model
 from .download import download_model

eotdl/models/download.py

@@ -5,8 +5,9 @@ from tqdm import tqdm
 from ..auth import with_auth
 from .retrieve import retrieve_model, retrieve_model_files
 from ..shared import calculate_checksum
-from ..repos import FilesAPIRepo
+from ..repos import FilesAPIRepo, ModelsAPIRepo
 from .metadata import generate_metadata
+from ..curation.stac import STACDataFrame
 
 
 @with_auth
@@ -46,20 +47,6 @@ def download_model(
     if model["quality"] == 0:
         if file:
             raise NotImplementedError("Downloading a specific file is not implemented")
-            # files = [f for f in model["files"] if f["name"] == file]
-            # if not files:
-            #     raise Exception(f"File {file} not found")
-            # if len(files) > 1:
-            #     raise Exception(f"Multiple files with name {file} found")
-            # dst_path = download(
-            #     model,
-            #     model["id"],
-            #     file,
-            #     files[0]["checksum"],
-            #     download_path,
-            #     user,
-            # )
-            # return Outputs(dst_path=dst_path)
         model_files = retrieve_model_files(model["id"], version)
         repo = FilesAPIRepo()
         for file in tqdm(model_files, disable=verbose, unit="file"):
@@ -74,41 +61,38 @@ def download_model(
                 file_version,
                 endpoint="models",
             )
-            # if calculate_checksum(dst_path) != checksum:
-            #     logger(f"Checksum for {file} does not match")
+            if verbose:
+                logger("Generating README.md ...")
+            generate_metadata(download_path, model)
     else:
-        raise NotImplementedError("Downloading a STAC model is not implemented")
-    #     logger("Downloading STAC metadata...")
-    #     gdf, error = repo.download_stac(
-    #         model["id"],
-    #         user["id_token"],
-    #     )
-    #     if error:
-    #         raise Exception(error)
-    #     df = STACDataFrame(gdf)
-    #     # df.geometry = df.geometry.apply(lambda x: Polygon() if x is None else x)
-    #     path = path
-    #     if path is None:
-    #         path = download_base_path + "/" + model["name"]
-    #     df.to_stac(path)
-    #     # download assets
-    #     if assets:
-    #         logger("Downloading assets...")
-    #         df = df.dropna(subset=["assets"])
-    #         for row in tqdm(df.iterrows(), total=len(df)):
-    #             id = row[1]["stac_id"]
-    #             # print(row[1]["links"])
-    #             for k, v in row[1]["assets"].items():
-    #                 href = v["href"]
-    #                 repo.download_file_url(
-    #                     href, f"{path}/assets/{id}", user["id_token"]
-    #                 )
-    #     else:
-    #         logger("To download assets, set assets=True or -a in the CLI.")
-    #     return Outputs(dst_path=path)
-    if verbose:
-        logger("Generating README.md ...")
-    generate_metadata(download_path, model)
+        if verbose:
+            logger("Downloading STAC metadata...")
+        repo = ModelsAPIRepo()
+        gdf, error = repo.download_stac(
+            model["id"],
+            user,
+        )
+        if error:
+            raise Exception(error)
+        df = STACDataFrame(gdf)
+        # df.geometry = df.geometry.apply(lambda x: Polygon() if x is None else x)
+        df.to_stac(download_path)
+        # download assets
+        if assets:
+            if verbose:
+                logger("Downloading assets...")
+            repo = FilesAPIRepo()
+            df = df.dropna(subset=["assets"])
+            for row in tqdm(df.iterrows(), total=len(df)):
+                for k, v in row[1]["assets"].items():
+                    href = v["href"]
+                    _, filename = href.split("/download/")
+                    # will overwrite assets with same name :(
+                    repo.download_file_url(
+                        href, filename, f"{download_path}/assets", user
+                    )
+        else:
+            logger("To download assets, set assets=True or -a in the CLI.")
     if verbose:
         logger("Done")
     return download_path

eotdl/models/ingest.py

@@ -2,13 +2,16 @@ from pathlib import Path
 import yaml
 import frontmatter
 import markdown
+from tqdm import tqdm
+import json
 
 from ..auth import with_auth
 from .metadata import Metadata, generate_metadata
-from ..repos import ModelsAPIRepo
+from ..repos import ModelsAPIRepo, FilesAPIRepo
 from ..shared import calculate_checksum
-from ..files import ingest_files
+from ..files import ingest_files, create_new_version
 from .update import update_model
+from ..curation.stac import STACDataFrame
 
 
 def ingest_model(
@@ -17,8 +20,8 @@ def ingest_model(
     path = Path(path)
     if not path.is_dir():
         raise Exception("Path must be a folder")
-    # if "catalog.json" in [f.name for f in path.iterdir()]:
-    #     return ingest_stac(path / "catalog.json", logger)
+    if "catalog.json" in [f.name for f in path.iterdir()]:
+        return ingest_stac(path / "catalog.json", logger)
     return ingest_folder(path, verbose, logger, force_metadata_update, sync_metadata)
 
 
@@ -101,3 +104,64 @@ def check_metadata(
             generate_metadata(str(folder), dataset)
             return False
     return False
+
+
+def retrieve_stac_model(model_name, user):
+    repo = ModelsAPIRepo()
+    data, error = repo.retrieve_model(model_name)
+    # print(data, error)
+    if data and data["uid"] != user["uid"]:
+        raise Exception("Model already exists.")
+    if error and error == "Model doesn't exist":
+        # create model
+        data, error = repo.create_stac_model(model_name, user)
+        # print(data, error)
+        if error:
+            raise Exception(error)
+        data["id"] = data["model_id"]
+    return data["id"]
+
+
+@with_auth
+def ingest_stac(stac_catalog, logger=None, user=None):
+    repo, files_repo = ModelsAPIRepo(), FilesAPIRepo()
+    # load catalog
+    logger("Loading STAC catalog...")
+    df = STACDataFrame.from_stac_file(stac_catalog)
+    catalog = df[df["type"] == "Catalog"]
+    assert len(catalog) == 1, "STAC catalog must have exactly one root catalog"
+    dataset_name = catalog.id.iloc[0]
+    # retrieve dataset (create if doesn't exist)
+    model_id = retrieve_stac_model(dataset_name, user)
+    # create new version
+    version = create_new_version(repo, model_id, user)
+    logger("New version created, version: " + str(version))
+    df2 = df.dropna(subset=["assets"])
+    for row in tqdm(df2.iterrows(), total=len(df2)):
+        try:
+            for k, v in row[1]["assets"].items():
+                data, error = files_repo.ingest_file(
+                    v["href"],
+                    model_id,
+                    user,
+                    calculate_checksum(v["href"]),  # is always absolute?
+                    "models",
+                    version,
+                )
+                if error:
+                    raise Exception(error)
+                file_url = (
+                    f"{repo.url}models/{data['model_id']}/download/{data['filename']}"
+                )
+                df.loc[row[0], "assets"][k]["href"] = file_url
+        except Exception as e:
+            logger(f"Error uploading asset {row[0]}: {e}")
+            break
+    # ingest the STAC catalog into geodb
+    logger("Ingesting STAC catalog...")
+    data, error = repo.ingest_stac(json.loads(df.to_json()), model_id, user)
+    if error:
+        # TODO: delete all assets that were uploaded
+        raise Exception(error)
+    logger("Done")
+    return

eotdl/repos/FilesAPIRepo.py

@@ -2,6 +2,7 @@ import requests
 import os
 from tqdm import tqdm
 import hashlib
+from io import BytesIO
 
 from ..repos import APIRepo
 
@@ -189,3 +190,11 @@ class FilesAPIRepo(APIRepo):
             headers=self.generate_headers(user),
         )
         return self.format_response(r)
+    
+    def get_file_stream(self, dataset_id, filename, user, version=None):
+        url = self.url + f"datasets/{dataset_id}/download/{filename}"
+        if version is not None:
+            url += "?version=" + str(version)
+        headers = self.generate_headers(user)
+        response = requests.get(url, headers=headers, stream=True)
+        return BytesIO(response.content)

eotdl/repos/ModelsAPIRepo.py

@@ -1,4 +1,5 @@
 import requests
+import geopandas as gpd
 
 from ..repos import APIRepo
 
@@ -53,3 +54,27 @@ class ModelsAPIRepo(APIRepo):
             headers=self.generate_headers(user),
         )
         return self.format_response(response)
+
+    def create_stac_model(self, name, user):
+        response = requests.post(
+            self.url + "models/stac",
+            json={"name": name},
+            headers=self.generate_headers(user),
+        )
+        return self.format_response(response)
+
+    def ingest_stac(self, stac_json, model_id, user):
+        response = requests.put(
+            self.url + f"models/stac/{model_id}",
+            json={"stac": stac_json},
+            headers=self.generate_headers(user),
+        )
+        return self.format_response(response)
+
+    def download_stac(self, model_id, user):
+        url = self.url + "models/" + model_id + "/download"
+        headers = self.generate_headers(user)
+        response = requests.get(url, headers=headers)
+        if response.status_code != 200:
+            return None, response.json()["detail"]
+        return gpd.GeoDataFrame.from_features(response.json()["features"]), None

{eotdl-2024.4.25.dist-info → eotdl-2024.6.13.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: eotdl
-Version: 2024.4.25
+Version: 2024.6.13
 Summary: Earth Observation Training Data Lab
 License: MIT
 Author: EarthPulse

{eotdl-2024.4.25.dist-info → eotdl-2024.6.13.dist-info}/RECORD

@@ -1,16 +1,16 @@
-eotdl/__init__.py,sha256=Xjz0HV07pCS8jc_wtvw9X3HLoZezV3e_yM1Bl2EuJNk,27
+eotdl/__init__.py,sha256=ThfWXF_wVGcoWrP25NDPXeCmuGEi8P8FKQkVKe_JZZA,27
 eotdl/access/__init__.py,sha256=jbyjD7BRGJURlTNmtcbBBhw3Xk4EiZvkqmEykM-bJ1k,231
 eotdl/access/airbus/__init__.py,sha256=G_kkRS9eFjXbQ-aehmTLXeAxh7zpAxz_rgB7J_w0NRg,107
 eotdl/access/airbus/client.py,sha256=zjfgB_NTsCCIszoQesYkyLJgheKg-eTh28vbleXYxfw,12018
 eotdl/access/airbus/parameters.py,sha256=Z8XIrxG5wAOuOoH-fkdKfdNMEMLFp6PaxJN7v4MefMI,1009
 eotdl/access/airbus/utils.py,sha256=oh_N1Rn4fhcvUgNPpH2QzVvpe4bA0gqRgNguzRVqUps,652
-eotdl/access/download.py,sha256=3LxfGbiZoPO2ReefKtscwnF5cMQdyLBfOnBDQA5xnlw,1568
+eotdl/access/download.py,sha256=DgemJKafNOlCUVW8OxpSP4br9ij5F1iSrSD-x0B5qFU,1845
 eotdl/access/search.py,sha256=sO2hml6JLK30DncNUqTWq16zy9LvRiWC6wtt5bNRzrI,633
 eotdl/access/sentinelhub/__init__.py,sha256=YpvaUBTRXM26WrXipo51ZUBCDv9WjRIdT8l1Pklpt_M,238
 eotdl/access/sentinelhub/client.py,sha256=g40avqlUpIa-WLjD7tK8CL8_SohBA2v3m8NZ0KbIFxc,4098
 eotdl/access/sentinelhub/evalscripts.py,sha256=m6cnZ6ryXHgdH2B7RDVSlDHXWfvKi7HMGkTHXEcJsTw,4142
 eotdl/access/sentinelhub/parameters.py,sha256=Ni3Lqx1bLVcMzgmnuayDS00BLDm7SuM1FExVdGafopI,2061
-eotdl/access/sentinelhub/utils.py,sha256=AUI3M_UX84lVdiSzOuZNiCLpHEP-sXJa97vEzAAZ-cM,3295
+eotdl/access/sentinelhub/utils.py,sha256=X9Q1YvErBdMsRKszXyaOaG6ZMvPdM2Nl_0SH-dWSFo0,3560
 eotdl/auth/__init__.py,sha256=OuGNfJQ-8Kymn4zIywlHQfImEO8DJMJIwOwTQm-u_dc,99
 eotdl/auth/auth.py,sha256=EjbVFREA2H0sjFJhVqjFZrwjKPzxRJ2x83MTjizpRBs,2029
 eotdl/auth/errors.py,sha256=E1lv3Igk--J-SOgNH18i8Xx9bXrrMyBSHKt_CAUmGPo,308
@@ -42,17 +42,18 @@ eotdl/curation/stac/extensions/sar.py,sha256=Akw3_5brY_x2yU094nSLbv0E6M9jnAeUC0V
 eotdl/curation/stac/extent.py,sha256=Jb3K4v59eu_h5t429r0762o0zG_LA50iEE-abWNL0e0,5108
 eotdl/curation/stac/parsers.py,sha256=H5IukLA61mpLojeuhWNQdiZk2eiYHAfpJBFxmjdGDso,1529
 eotdl/curation/stac/stac.py,sha256=9GdiB1mV8iyREvXZoJmNJKQGawWyK3h9Eu0hJX5u6O4,13180
-eotdl/datasets/__init__.py,sha256=oFSUD0OLvUS4_iwu_V1iAQ_VAML-8RWDbxgtuFdU5ZA,170
+eotdl/datasets/__init__.py,sha256=xNbkUjqI1mf0TGjy52tpZtr5DnWNX5EVgyM04P4sU3Y,175
 eotdl/datasets/download.py,sha256=JSOi7OKiENYQ3TRVj2WsC1CPYD22VlC9W5kYHPfx8Vs,3667
 eotdl/datasets/ingest.py,sha256=Ukiah6TapD1oBE0AxUTaEFf-k3hAMRrKr4cXVlVW-_Y,5806
 eotdl/datasets/metadata.py,sha256=qonblTDGr4IZvJaiIc2rh7qwP76whEA72DorSVqZxd4,1457
 eotdl/datasets/retrieve.py,sha256=DJz5K1bCLizg9YNwBnhHMFzcxMXar2socYkFONdSL4c,1041
 eotdl/datasets/update.py,sha256=x-rpfxnavn9X-7QYkFMGtbn1b3bKmAZydOeS7Tjr5AQ,386
-eotdl/files/__init__.py,sha256=wStggK9L_Ni3vdZkKtKmKVdAaZRVuiMbsjYBCrJ8rxs,53
+eotdl/files/__init__.py,sha256=2zfAxgLHmU_jWq_3emnfPXsX-R20gSt-yZX0bPa9h0g,87
 eotdl/files/ingest.py,sha256=dgjZfd-ACCKradDo2B02CPahwEhFtWvnKvTm372K5eo,6185
-eotdl/models/__init__.py,sha256=fe1VfnlOxlfviphkkzaY4q8mkm0QxcdJxB3peScBZYk,108
-eotdl/models/download.py,sha256=uXWUslaBkJ222BfctbO0eKNcw6Unx1-Pa9Yv5RHXJIo,4119
-eotdl/models/ingest.py,sha256=KmBFUS1pkUYdegfi0lL1sd__lj9GMoJ7jxvnVXfY8Ts,3381
+eotdl/files/list_files.py,sha256=k4OgdbQ7u6tUEE9nJZGXw5s5HtvG0ZApOVTy0KbfTqs,519
+eotdl/models/__init__.py,sha256=-PvGWG0iSRNBqeFWpxol12dYw-QodXjR81n-JX3x6zI,146
+eotdl/models/download.py,sha256=4dgxE9ytT8QqiCyx1r19vL5UASfttUN_mCPKhFwMTfs,3410
+eotdl/models/ingest.py,sha256=8xhGlsADi5dZSNbph4WWMk0cs2J_StxNCYRkSjMhUtg,5747
 eotdl/models/metadata.py,sha256=S5bpIB4e2pivDnReszJKC3bYBZcaHu-KMYOc3AwHbQ4,1443
 eotdl/models/retrieve.py,sha256=-Ij7dT4J1p7MW4n13OlPB9OW4tBaBXPwk9dW8IuCZPc,664
 eotdl/models/update.py,sha256=4FWeD95cXvRpefRjw3Foqb30e30otxqWUZ6nQM9cbmM,374
@@ -60,8 +61,8 @@ eotdl/repos/APIRepo.py,sha256=dJNdX3atBpug0FZNako7uyom25iccNPQrnoIRTIZEXE,791
 eotdl/repos/AuthAPIRepo.py,sha256=vYCqFawe3xUm2cx4SqVXCvzl8J_sr9rs_MkipYC0bXE,957
 eotdl/repos/AuthRepo.py,sha256=jpzzhINCcDZHRCyrPDsp49h17IlXp2HvX3BB3f5cnb4,1154
 eotdl/repos/DatasetsAPIRepo.py,sha256=rKqSe-UjJOlD0Kbypu4Gs5kx2mzUD7TY05gv2vgUTv4,2660
-eotdl/repos/FilesAPIRepo.py,sha256=vHyEePwNERInSo2d3-USgtx-QkXqA3Jzgo5AtuWrAHU,6768
-eotdl/repos/ModelsAPIRepo.py,sha256=7-0c-3OCTCwKUZ-Z7PWtbRusUxpTU7m2H5jIAcFoJ9M,1677
+eotdl/repos/FilesAPIRepo.py,sha256=cS6CFTkSYIXcefHEeLt7I69_EyyO-jhoAwQ7UWYlLkc,7171
+eotdl/repos/ModelsAPIRepo.py,sha256=79euf5WsfUxG5KSIGhKT8T7kSl-NtISwxvqHnck-bq0,2616
 eotdl/repos/__init__.py,sha256=WvX5TP49k7yYb5dWWNjv5kzbdluO3dJ4LqjQxRIOUVc,222
 eotdl/shared/__init__.py,sha256=mF7doJC8Z5eTPmB01UQvPivThZac32DRY33T6qshXfg,41
 eotdl/shared/checksum.py,sha256=4IB6N9jRO0chMDNJzpdnFDhC9wcFF9bO5oHq2HodcHw,479
@@ -72,7 +73,7 @@ eotdl/tools/paths.py,sha256=yWhOtVxX4NxrDrrBX2fuye5N1mAqrxXFy_eA7dffd84,1152
 eotdl/tools/stac.py,sha256=ovXdrPm4Sn9AAJmrP88WnxDmq2Ut-xPoscjphxz3Iyo,5763
 eotdl/tools/time_utils.py,sha256=qJ3-rk1I7ne722SLfAP6-59kahQ0vLQqIf9VpOi0Kpg,4691
 eotdl/tools/tools.py,sha256=Tl4_v2ejkQo_zyZek8oofJwoYcdVosdOwW1C0lvWaNM,6354
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