eotdl 2023.11.2.post5__py3-none-any.whl → 2023.11.3.post2__py3-none-any.whl

eotdl/tools/tools.py

@@ -2,22 +2,22 @@
 Module for data engineeringt
 """
 
-import geopandas as gpd
-import pandas as pd
-import tarfile
 import re
+import tarfile
 import datetime
 import json
-
-from .geo_utils import get_image_bbox
-from shapely.geometry import box
 from os.path import exists
 from typing import Union, Optional
+import geopandas as gpd
+import pandas as pd
+
+from shapely.geometry import box
+from .geo_utils import get_image_bbox
 
 
 def get_images_by_location(gdf: gpd.GeoDataFrame) -> pd.DataFrame:
     """
-    Generate a GeoDataFrame with the available images for each location in the dataset. 
+    Generate a GeoDataFrame with the available images for each location in the dataset.
 
     :param gdf: GeoDataFrame generated from the ItemCollection of a sen12floods collection
     :return gdf_dates_per_aoi:  GeoDataFrame with the available images for each location in
@@ -27,7 +27,7 @@ def get_images_by_location(gdf: gpd.GeoDataFrame) -> pd.DataFrame:
                 - images_count: the count of available images of each location.
                 - images_dates: list with the dates of the available images of each location.
     """
-    uniques_location_id = gdf['scene_id'].unique()   # List of unique location ids
+    uniques_location_id = gdf["scene_id"].unique()  # List of unique location ids
     uniques_location_id.sort()
 
     images_count_list, images_dates_list = [], []
@@ -35,83 +35,105 @@ def get_images_by_location(gdf: gpd.GeoDataFrame) -> pd.DataFrame:
     # Iterate the unique location ids, count the number of images per location and generate
     # a list with the dates of every image in a location
     for location_id in uniques_location_id:
-        dates = gdf[gdf['scene_id'] == location_id]['datetime']
+        dates = gdf[gdf["scene_id"] == location_id]["datetime"]
         images_count_list.append(dates.count())
         images_dates_list.append(dates.tolist())
 
-    images_dates_list.sort()   # Sort the list of dates
-    data = {'scene_id': uniques_location_id, 'dates_count': images_count_list, 'dates_list': images_dates_list}
+    images_dates_list.sort()  # Sort the list of dates
+    data = {
+        "scene_id": uniques_location_id,
+        "dates_count": images_count_list,
+        "dates_list": images_dates_list,
+    }
     df_dates_per_aoi = pd.DataFrame.from_dict(data)
 
     return df_dates_per_aoi
 
 
-def generate_location_payload(gdf: Union[gpd.GeoDataFrame, pd.DataFrame], path: str) -> dict:
+def generate_location_payload(
+    gdf: Union[gpd.GeoDataFrame, pd.DataFrame], path: str
+) -> dict:
     """
-    Generate a dictionary with the location payload of the locations in the GeoDataFrame, 
+    Generate a dictionary with the location payload of the locations in the GeoDataFrame,
     such as the bounding box and the time interval to search for available data.
     """
     payload_cache = f"{path}/location_payload.json"
     if exists(payload_cache):
         # Read as dict
-        with open(payload_cache, 'r') as f:
+        with open(payload_cache, "r", encoding="utf-8") as f:
             payload = json.load(f)
         return payload
-    
-    bbox_date_by_location = dict()
-    for i, row in gdf.iterrows():
+
+    bbox_date_by_location = {}
+    for _, row in gdf.iterrows():
         # Get list from dates_list column
-        dates_list = list(row['dates_list'])
+        dates_list = list(row["dates_list"])
         for date in dates_list:
-            location_id = row['location_id']
-            date_formatted = datetime.datetime.strptime(date, '%Y-%m-%dT%H:%M:%S.%fZ').strftime('%Y-%m-%d')
-            location_id_formatted = f'{location_id}_{date_formatted}'
+            location_id = row["location_id"]
+            date_formatted = datetime.datetime.strptime(
+                date, "%Y-%m-%dT%H:%M:%S.%fZ"
+            ).strftime("%Y-%m-%d")
+            location_id_formatted = f"{location_id}_{date_formatted}"
             bbox_date_by_location[location_id_formatted] = {
-                'bounding_box': row['geometry'].bounds,
+                "bounding_box": row["geometry"].bounds,
                 # Convert str to datetime
-                'time_interval': (date, date)
+                "time_interval": (date, date),
             }
 
     # Save to json
-    with open(payload_cache, 'w') as f:
+    with open(payload_cache, "w", encoding="utf-8") as f:
         json.dump(bbox_date_by_location, f)
 
     return bbox_date_by_location
 
 
-def get_tarfile_image_info(tar: str, path: Optional[str] = None, pattern: Optional[str] = r"\d{8}T\d{6}", level: Optional[int] = 2):
+def get_tarfile_image_info(
+    tar: str,
+    path: Optional[str] = None,
+    pattern: Optional[str] = r"\d{8}T\d{6}",
+    level: Optional[int] = 2,
+):
     """
+    Generate a GeoDataFrame with the available images for each location in the dataset.
     """
     if path:
         gdf_cache = f"{path}/tarfile_images_info.csv"
         if exists(gdf_cache):
-            images_gdf = gpd.read_file(gdf_cache,
-                                       GEOM_POSSIBLE_NAMES="geometry", 
-                                       KEEP_GEOM_COLUMNS="NO")
+            images_gdf = gpd.read_file(
+                gdf_cache, GEOM_POSSIBLE_NAMES="geometry", KEEP_GEOM_COLUMNS="NO"
+            )
             images_gdf.set_crs(epsg=4326, inplace=True)
-            
+
             return images_gdf
-    
+
     images_df = pd.DataFrame()
-    with tarfile.open(tar, 'r:gz') as tar:
-        rasters = [i for i in tar.getnames() if i.endswith(".tif") or i.endswith(".tiff")]
+    with tarfile.open(tar, "r:gz") as tarf:
+        rasters = [
+            i for i in tarf.getnames() if i.endswith(".tif") or i.endswith(".tiff")
+        ]
         for raster in rasters:
-            r = tar.extractfile(raster)
+            r = tarf.extractfile(raster)
             bbox = get_image_bbox(r)
             date = extract_image_date_in_folder(raster, pattern)
-            date_formatted = datetime.datetime.strptime(date, '%Y-%m-%dT%H:%M:%S.%fZ').strftime('%Y-%m-%d')
-            id = extract_image_id_in_folder(raster, level)
+            image_id = extract_image_id_in_folder(raster, level)
             # Use pd.concat to append to dataframe
-            images_df = pd.concat([images_df, pd.DataFrame({"location_id": [id], 
-                                                            "datetime": [date], 
-                                                            "bbox": [bbox]})])
+            images_df = pd.concat(
+                [
+                    images_df,
+                    pd.DataFrame(
+                        {"location_id": [image_id], "datetime": [date], "bbox": [bbox]}
+                    ),
+                ]
+            )
 
     # Clean duplicates
     images_df = images_df.drop_duplicates(subset=["location_id", "datetime"])
     # Convert to geodataframe
-    images_gdf = gpd.GeoDataFrame(images_df, 
-                                  crs='EPSG:4326',
-                                  geometry=images_df["bbox"].apply(lambda x: box(x[0], x[1], x[2], x[3])))
+    images_gdf = gpd.GeoDataFrame(
+        images_df,
+        crs="EPSG:4326",
+        geometry=images_df["bbox"].apply(lambda x: box(x[0], x[1], x[2], x[3])),
+    )
     # Drop bbox column
     images_gdf = images_gdf.drop(columns=["bbox"])
     # Set crs
@@ -126,32 +148,44 @@ def get_tarfile_image_info(tar: str, path: Optional[str] = None, pattern: Option
 
 
 def extract_image_date_in_folder(raster_path: str, pattern: str):
+    """
+    Extract the date from the folder name of the image.
+    """
     case = re.findall(pattern, raster_path)
 
     if case:
         date = case[0]
         # Convert date to format YYYY-MM-DDT00:00:00.000Z as datetime object
-        formatted_date = datetime.datetime.strptime(date, '%Y%m%dT%H%M%S').strftime('%Y-%m-%dT%H:%M:%S.%fZ')
+        formatted_date = datetime.datetime.strptime(date, "%Y%m%dT%H%M%S").strftime(
+            "%Y-%m-%dT%H:%M:%S.%fZ"
+        )
         return formatted_date
-    
+
     return None
 
 
 def extract_image_id_in_folder(raster_path: str, level: int):
+    """
+    Extract the location id from the folder name of the image, given the level of the folder.
+    """
     return raster_path.split("/")[level]
 
 
-def format_product_location_payload(location_payload: dict,
-                                    images_response: dict,
-                                    all_info: bool = False
-                                    ) -> dict:
+def format_product_location_payload(
+    location_payload: dict, images_response: dict, all_info: bool = False
+) -> dict:
     """
+    Format the location payload with the images response.
     """
-    for id, info in location_payload.items():
+    for _, _ in location_payload.items():
         # Add new key to the dictionary
         if all_info:
-            location_payload[id]['image'] = images_response[id] if id in images_response else None
+            location_payload[id]["image"] = (
+                images_response[id] if id in images_response else None
+            )
         else:
-            location_payload[id]['image'] = images_response[id]['properties']['id'] if images_response[id] else None
+            location_payload[id]["image"] = (
+                images_response[id]["properties"]["id"] if images_response[id] else None
+            )
 
     return location_payload

{eotdl-2023.11.2.post5.dist-info → eotdl-2023.11.3.post2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: eotdl
-Version: 2023.11.2.post5
+Version: 2023.11.3.post2
 Summary: Earth Observation Training Data Lab
 License: MIT
 Author: EarthPulse
@@ -12,11 +12,13 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
+Requires-Dist: black (>=23.10.1,<24.0.0)
 Requires-Dist: geomet (>=1.0.0,<2.0.0)
 Requires-Dist: geopandas (>=0.13.2,<0.14.0)
+Requires-Dist: mypy (>=1.6.1,<2.0.0)
 Requires-Dist: pydantic (>=1.10.6,<2.0.0)
 Requires-Dist: pyjwt (>=2.6.0,<3.0.0)
-Requires-Dist: pystac (>=1.8.2,<2.0.0)
+Requires-Dist: pystac[validation] (==1.8.2)
 Requires-Dist: pyyaml (>=6.0.1,<7.0.0)
 Requires-Dist: rasterio (>=1.3.9,<2.0.0)
 Requires-Dist: requests (>=2.28.2,<3.0.0)
@@ -27,7 +29,7 @@ Description-Content-Type: text/markdown
 
 <p align="center">
   <a href="https://www.eotdl.com/">
-    <img src="eotdl.png" width="350px" alt="EOTDL" />
+    <img src="eotdl.png" alt="EOTDL" />
   </a>
 </p>
 

eotdl-2023.11.3.post2.dist-info/RECORD

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